Wall clock time and date at job start Tue Mar 31 2020 21:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.99852 * 2 1 4 4 C 1.54310 * 109.98353 * 238.97398 * 2 1 3 5 5 H 1.09003 * 110.92690 * 144.62915 * 4 2 1 6 6 C 1.50704 * 110.59368 * 21.30610 * 4 2 1 7 7 C 1.38236 * 119.99808 * 284.95298 * 6 4 2 8 8 C 1.38238 * 119.99958 * 179.74271 * 7 6 4 9 9 C 1.38237 * 119.99638 * 0.54657 * 8 7 6 10 10 C 1.38231 * 120.00381 * 359.70320 * 9 8 7 11 11 C 1.38234 * 119.99805 * 0.02562 * 10 9 8 12 12 C 1.55156 * 102.86380 * 263.04595 * 4 2 1 13 13 C 1.54910 * 101.58124 * 324.30439 * 12 4 2 14 14 N 1.47016 * 109.88324 * 121.09617 * 2 1 3 15 15 S 1.65593 * 125.65077 * 300.51196 * 14 2 1 16 16 O 1.42105 * 106.40525 * 156.17627 * 15 14 2 17 17 O 1.42099 * 106.40504 * 23.25828 * 15 14 2 18 18 N 1.65599 * 107.22017 * 269.71736 * 15 14 2 19 19 C 1.46503 * 119.99999 * 89.99881 * 18 15 14 20 20 C 1.46497 * 119.99951 * 269.99999 * 18 15 14 21 21 C 1.50701 * 109.47178 * 264.99658 * 20 18 15 22 22 H 1.07993 * 119.99907 * 0.02562 * 21 20 18 23 23 C 1.37882 * 119.99757 * 180.02562 * 21 20 18 24 24 N 1.31520 * 119.99754 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00252 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47109 * 90.00283 * 25 23 21 27 27 H 1.48505 * 109.47137 * 210.00226 * 25 23 21 28 28 H 1.48502 * 109.46939 * 329.99758 * 25 23 21 29 29 H 1.09004 * 109.46603 * 305.33034 * 1 2 3 30 30 H 1.08993 * 109.47021 * 65.33226 * 1 2 3 31 31 H 1.08998 * 109.46939 * 185.33564 * 1 2 3 32 32 H 1.07997 * 120.00010 * 359.97438 * 7 6 4 33 33 H 1.07991 * 120.00404 * 180.27336 * 8 7 6 34 34 H 1.08007 * 119.99786 * 179.72317 * 9 8 7 35 35 H 1.07996 * 120.00649 * 179.97438 * 10 9 8 36 36 H 1.08000 * 120.00502 * 179.97438 * 11 10 9 37 37 H 1.09001 * 111.00619 * 206.23098 * 12 4 2 38 38 H 1.09006 * 111.03776 * 82.39344 * 12 4 2 39 39 H 1.09000 * 110.36287 * 278.16922 * 13 12 4 40 40 H 1.08998 * 110.36487 * 155.84429 * 13 12 4 41 41 H 1.09006 * 109.46699 * 270.00240 * 19 18 15 42 42 H 1.09002 * 109.47107 * 150.00411 * 19 18 15 43 43 H 1.09001 * 109.47046 * 30.00227 * 19 18 15 44 44 H 1.08997 * 109.47386 * 25.00054 * 20 18 15 45 45 H 1.09002 * 109.47297 * 144.99623 * 20 18 15 46 46 H 0.96997 * 119.99631 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0574 -0.7475 -1.2427 5 1 2.9707 -0.2848 -1.6169 6 6 1.0034 -0.7965 -2.3187 7 6 -0.0689 -1.6604 -2.1970 8 6 -1.0385 -1.7015 -3.1814 9 6 -0.9299 -0.8870 -4.2930 10 6 0.1451 -0.0268 -4.4172 11 6 1.1117 0.0184 -3.4301 12 6 2.3476 -2.1692 -0.6934 13 6 2.8524 -1.8530 0.7366 14 7 2.0301 -0.7140 1.1839 15 16 1.7159 -0.3101 2.7587 16 8 1.8853 -1.4985 3.5193 17 8 0.5090 0.4399 2.7476 18 7 2.9087 0.7305 3.2453 19 6 2.7377 2.1747 3.0688 20 6 4.1349 0.2068 3.8522 21 6 4.0014 0.2285 5.3532 22 1 3.0938 0.5952 5.8093 23 6 5.0380 -0.2199 6.1440 24 7 4.9213 -0.2014 7.4539 25 14 6.6076 -0.8549 5.3550 26 1 7.5609 0.2693 5.1746 27 1 7.2193 -1.8869 6.2304 28 1 6.2904 -1.4522 4.0329 29 1 -0.3633 0.5943 0.8385 30 1 -0.3633 0.4289 -0.9338 31 1 -0.3633 -1.0232 0.0956 32 1 -0.1511 -2.3004 -1.3310 33 1 -1.8785 -2.3732 -3.0842 34 1 -1.6851 -0.9223 -5.0643 35 1 0.2302 0.6093 -5.2858 36 1 1.9519 0.6901 -3.5273 37 1 3.1212 -2.6645 -1.2802 38 1 1.4386 -2.7700 -0.6629 39 1 3.9060 -1.5746 0.7140 40 1 2.6998 -2.7112 1.3911 41 1 3.1288 2.4705 2.0953 42 1 3.2787 2.7033 3.8537 43 1 1.6783 2.4248 3.1260 44 1 4.2977 -0.8174 3.5167 45 1 4.9810 0.8257 3.5538 46 1 5.6505 -0.5172 8.0102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433757248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:30 Heat of formation + Delta-G solvation = -58.980335 kcal Electronic energy + Delta-G solvation = -28440.151141 eV Core-core repulsion = 24648.862558 eV Total energy + Delta-G solvation = -3791.288583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.15276 -38.86949 -38.38035 -37.31751 -36.89851 -34.52758 -33.70177 -32.14055 -31.76075 -30.30300 -29.77082 -26.94241 -26.78377 -23.94619 -23.69291 -23.43981 -22.68725 -20.77687 -19.81907 -19.20155 -18.59205 -18.40523 -17.68722 -17.25916 -16.70004 -16.27513 -15.95056 -15.63376 -15.52597 -15.26487 -14.85723 -14.58583 -14.48791 -14.42464 -14.24040 -14.12044 -13.89857 -13.63487 -13.45974 -13.29980 -13.15465 -13.01410 -12.99050 -12.81753 -12.64442 -12.38931 -12.33552 -12.19303 -12.02004 -11.99960 -11.75735 -11.72661 -11.52947 -11.38620 -10.79318 -10.07278 -9.80105 -9.69649 -9.46321 -8.30630 -6.37308 -0.46373 0.51897 0.60181 1.35521 1.40613 1.50076 1.99532 2.34816 2.52487 2.91240 3.02814 3.22458 3.56222 3.72467 3.79884 4.02269 4.12779 4.19894 4.23980 4.33346 4.35583 4.39381 4.50876 4.51677 4.62877 4.65862 4.69896 4.78521 4.82769 4.83478 4.88719 4.97381 4.99849 5.05461 5.18381 5.22072 5.28247 5.29157 5.30325 5.43946 5.46075 5.47620 5.67687 5.73010 5.77897 5.82932 6.20662 6.28477 6.65333 7.25876 8.87200 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023346 B = 0.003225 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.048805 B = 8681.287589 C = 9021.856756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.153 3.847 3 H 0.085 0.915 4 C -0.046 4.046 5 H 0.114 0.886 6 C -0.073 4.073 7 C -0.123 4.123 8 C -0.132 4.132 9 C -0.131 4.131 10 C -0.127 4.127 11 C -0.121 4.121 12 C -0.114 4.114 13 C 0.103 3.897 14 N -1.013 6.013 15 S 2.804 3.196 16 O -1.008 7.008 17 O -0.999 6.999 18 N -1.002 6.002 19 C 0.088 3.912 20 C 0.236 3.764 21 C -0.546 4.546 22 H 0.024 0.976 23 C 0.005 3.995 24 N -0.949 5.949 25 Si 0.948 3.052 26 H -0.252 1.252 27 H -0.283 1.283 28 H -0.238 1.238 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.035 0.965 45 H 0.055 0.945 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 -0.443 -29.401 29.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.048 3.952 3 H 0.103 0.897 4 C -0.065 4.065 5 H 0.132 0.868 6 C -0.074 4.074 7 C -0.140 4.140 8 C -0.150 4.150 9 C -0.149 4.149 10 C -0.144 4.144 11 C -0.139 4.139 12 C -0.153 4.153 13 C -0.021 4.021 14 N -0.854 5.854 15 S 2.815 3.185 16 O -0.992 6.992 17 O -0.983 6.983 18 N -0.842 5.842 19 C -0.057 4.057 20 C 0.111 3.889 21 C -0.586 4.586 22 H 0.042 0.958 23 C -0.193 4.193 24 N -0.589 5.589 25 Si 0.769 3.231 26 H -0.176 1.176 27 H -0.209 1.209 28 H -0.161 1.161 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.723 -0.732 -28.589 29.165 hybrid contribution 0.557 -0.139 0.850 1.026 sum -5.166 -0.871 -27.739 28.229 Atomic orbital electron populations 1.22641 0.95335 1.02566 1.03212 1.21426 0.94045 0.95993 0.83728 0.89741 1.21245 0.97634 0.96410 0.91260 0.86769 1.19588 0.95698 0.96951 0.95154 1.21267 0.94576 0.99211 0.98990 1.21358 0.99264 0.99959 0.94438 1.21425 0.98776 0.96424 0.98262 1.21412 0.94378 0.99128 0.99519 1.21288 1.00022 0.99050 0.93513 1.22946 1.02876 0.96214 0.93239 1.22292 0.95241 0.87596 0.97005 1.59055 1.64789 1.40067 1.21529 1.00989 0.72845 0.72443 0.72267 1.93556 1.86860 1.49187 1.69588 1.93481 1.44562 1.73099 1.87164 1.57457 1.34685 1.17660 1.74426 1.21593 1.02331 0.79004 1.02764 1.19200 0.83817 0.94663 0.91203 1.21701 1.01826 1.42943 0.92090 0.95768 1.26002 1.03026 0.95057 0.95177 1.70082 1.34569 1.48578 1.05695 0.85718 0.78292 0.79247 0.79807 1.17629 1.20876 1.16111 0.92268 0.89914 0.92434 0.86158 0.85201 0.84665 0.84313 0.84407 0.87239 0.90279 0.90055 0.91328 0.90010 0.91220 0.91232 0.94731 0.92725 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.36 7.52 71.99 0.54 -3.82 16 2 C 0.15 3.43 3.63 45.34 0.16 3.59 16 3 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.05 -0.73 3.14 -10.35 -0.03 -0.76 16 5 H 0.11 1.39 8.05 -2.39 -0.02 1.37 16 6 C -0.07 -1.15 3.62 -19.86 -0.07 -1.22 16 7 C -0.12 -2.04 6.76 22.27 0.15 -1.89 16 8 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 9 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 10 C -0.13 -1.59 10.05 22.27 0.22 -1.36 16 11 C -0.12 -1.62 9.69 22.27 0.22 -1.41 16 12 C -0.11 -1.88 6.38 31.99 0.20 -1.67 16 13 C 0.10 2.45 7.11 86.86 0.62 3.07 16 14 N -1.01 -29.13 3.47 -484.29 -1.68 -30.81 16 15 S 2.80 113.14 6.27 -56.49 -0.35 112.79 16 16 O -1.01 -50.02 16.43 -128.00 -2.10 -52.12 16 17 O -1.00 -41.90 13.85 -128.00 -1.77 -43.68 16 18 N -1.00 -40.99 3.23 -543.21 -1.75 -42.74 16 19 C 0.09 2.93 10.68 127.77 1.36 4.29 16 20 C 0.24 11.01 4.15 85.63 0.36 11.37 16 21 C -0.55 -32.41 9.94 25.60 0.25 -32.15 16 22 H 0.02 1.63 8.06 -2.91 -0.02 1.60 16 23 C 0.01 0.30 5.47 84.65 0.46 0.76 16 24 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 25 Si 0.95 42.74 27.47 68.60 1.88 44.62 16 26 H -0.25 -10.42 7.11 99.48 0.71 -9.72 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 28 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 29 H 0.06 1.77 5.94 -2.39 -0.01 1.75 16 30 H 0.08 1.73 6.44 -2.39 -0.02 1.71 16 31 H 0.06 1.40 6.39 -2.39 -0.02 1.39 16 32 H 0.12 2.06 5.32 -2.91 -0.02 2.04 16 33 H 0.13 1.57 8.06 -2.92 -0.02 1.54 16 34 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.14 1.34 8.05 -2.91 -0.02 1.31 16 37 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.33 5.93 -2.38 -0.01 1.32 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.84 7.78 -2.39 -0.02 1.82 16 41 H 0.08 2.00 8.14 -2.38 -0.02 1.99 16 42 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 43 H 0.07 2.27 7.02 -2.39 -0.02 2.26 16 44 H 0.03 1.60 6.67 -2.39 -0.02 1.59 16 45 H 0.05 2.27 7.54 -2.39 -0.02 2.25 16 46 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -79.46 369.93 0.34 -79.13 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.92 Total: 17.72 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 4.90 Total: -24.46 kcal Atomic # 7 Polarization: -130.87 SS G_CDS: -3.13 Total: -134.01 kcal Atomic # 8 Polarization: -91.92 SS G_CDS: -3.88 Total: -95.79 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.88 Total: 44.62 kcal Atomic # 16 Polarization: 113.14 SS G_CDS: -0.35 Total: 112.79 kcal Total: -79.46 0.34 -79.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433757248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.145 kcal (2) G-P(sol) polarization free energy of solvation -79.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds