Wall clock time and date at job start Tue Mar 31 2020 21:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.30648 * 2 1 4 4 C 1.54387 * 110.34354 * 122.28645 * 2 1 3 5 5 N 1.48151 * 104.61894 * 142.73908 * 4 2 1 6 6 C 1.34769 * 127.83982 * 140.43284 * 5 4 2 7 7 O 1.21697 * 120.00017 * 187.12023 * 6 5 4 8 8 C 1.46657 * 120.00246 * 7.12006 * 6 5 4 9 9 C 1.37925 * 126.21618 * 187.57493 * 8 6 5 10 10 C 1.39935 * 107.10884 * 180.02562 * 9 8 6 11 11 F 1.35095 * 126.07675 * 180.02562 * 10 9 8 12 12 C 1.35573 * 107.84065 * 0.02562 * 10 9 8 13 13 N 1.35744 * 108.83089 * 359.73307 * 12 10 9 14 14 H 0.96999 * 125.67590 * 180.29614 * 13 12 10 15 15 C 1.48153 * 104.32141 * 320.41465 * 5 4 2 16 16 C 1.54285 * 110.34341 * 237.82571 * 2 1 3 17 17 H 1.08993 * 110.34801 * 122.15204 * 16 2 1 18 18 N 1.46903 * 110.34471 * 359.97438 * 16 2 1 19 19 C 1.46898 * 111.00078 * 163.92386 * 18 16 2 20 20 C 1.50698 * 109.46902 * 180.02562 * 19 18 16 21 21 O 1.21288 * 120.00461 * 359.97438 * 20 19 18 22 22 N 1.34775 * 119.99843 * 180.02562 * 20 19 18 23 23 C 1.37106 * 120.00031 * 179.97438 * 22 20 19 24 24 H 1.07992 * 120.00004 * 0.02562 * 23 22 20 25 25 C 1.38951 * 119.99892 * 180.02562 * 23 22 20 26 26 N 1.31409 * 120.00209 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99842 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47180 * 59.99787 * 27 25 23 29 29 H 1.48495 * 109.46930 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47072 * 299.99643 * 27 25 23 31 31 H 1.09006 * 109.46976 * 176.38813 * 1 2 3 32 32 H 1.09001 * 109.47522 * 296.37931 * 1 2 3 33 33 H 1.08997 * 109.47234 * 56.38505 * 1 2 3 34 34 H 1.09001 * 110.40729 * 261.51957 * 4 2 1 35 35 H 1.08998 * 110.40835 * 23.83900 * 4 2 1 36 36 H 1.07996 * 126.44728 * 0.02562 * 9 8 6 37 37 H 1.07999 * 125.58133 * 179.97438 * 12 10 9 38 38 H 1.09002 * 110.40513 * 280.79899 * 15 5 4 39 39 H 1.09002 * 110.40508 * 158.37199 * 15 5 4 40 40 H 1.00908 * 110.99364 * 39.97551 * 18 16 2 41 41 H 1.09004 * 109.46990 * 60.00595 * 19 18 16 42 42 H 1.08996 * 109.47487 * 300.00948 * 19 18 16 43 43 H 0.97000 * 120.00224 * 0.02562 * 22 20 19 44 44 H 0.97003 * 120.00336 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0667 -0.7732 1.2238 5 7 3.2664 -1.4824 0.7212 6 6 4.4423 -1.6680 1.3530 7 8 5.3817 -2.1620 0.7576 8 6 4.5899 -1.2746 2.7581 9 6 5.7628 -1.2686 3.4838 10 6 5.4467 -0.8270 4.7735 11 9 6.3145 -0.6766 5.7979 12 6 4.1148 -0.5769 4.8121 13 7 3.5840 -0.8401 3.5908 14 1 2.6507 -0.7403 3.3462 15 6 2.8802 -1.9416 -0.6333 16 6 2.0663 -0.7703 -1.2245 17 1 2.7080 -0.1265 -1.8259 18 7 0.9524 -1.2808 -2.0348 19 6 1.4121 -1.6743 -3.3733 20 6 0.2445 -2.1910 -4.1737 21 8 -0.8617 -2.2284 -3.6778 22 7 0.4297 -2.6126 -5.4403 23 6 -0.6325 -3.0833 -6.1684 24 1 -1.6176 -3.1157 -5.7271 25 6 -0.4415 -3.5185 -7.4741 26 7 0.7571 -3.4785 -8.0113 27 14 -1.8889 -4.1590 -8.4663 28 1 -2.9149 -3.0926 -8.5900 29 1 -1.4240 -4.5573 -9.8191 30 1 -2.4783 -5.3357 -7.7786 31 1 -0.3633 -1.0257 -0.0647 32 1 -0.3634 0.4566 0.9206 33 1 -0.3633 0.5689 -0.8558 34 1 2.3401 -0.0814 2.0205 35 1 1.3227 -1.4861 1.5791 36 1 6.7411 -1.5516 3.1244 37 1 3.5667 -0.2223 5.6724 38 1 2.2640 -2.8385 -0.5692 39 1 3.7673 -2.1313 -1.2377 40 1 0.2073 -0.6028 -2.0931 41 1 2.1659 -2.4565 -3.2832 42 1 1.8441 -0.8100 -3.8778 43 1 1.3145 -2.5839 -5.8367 44 1 0.8904 -3.7820 -8.9230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281428373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:14 Heat of formation + Delta-G solvation = -42.200896 kcal Electronic energy + Delta-G solvation = -28553.713760 eV Core-core repulsion = 24229.232363 eV Total energy + Delta-G solvation = -4324.481397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.86027 -41.84374 -40.06517 -38.53065 -37.88776 -34.96570 -33.88269 -32.49792 -31.43599 -31.23535 -30.29365 -28.57310 -27.04900 -26.18174 -24.46728 -23.59314 -22.15756 -21.36384 -20.69648 -19.57645 -19.37665 -18.43698 -17.91153 -17.09183 -16.44612 -16.20276 -15.98954 -15.89498 -15.57228 -15.53183 -15.15869 -14.90034 -14.51605 -14.32191 -14.11148 -13.96332 -13.79503 -13.74216 -13.43973 -13.07073 -12.55351 -12.50206 -12.31572 -12.12419 -12.02465 -11.79638 -11.56729 -11.30173 -11.12850 -10.99162 -10.93196 -10.47027 -10.44301 -10.24656 -9.53603 -9.40402 -9.14785 -8.71744 -8.53892 -8.20374 -8.00256 -6.44772 -3.86047 0.91281 1.99714 2.35998 2.53042 2.93229 3.17513 3.23912 3.27760 3.84005 3.86009 4.02381 4.06254 4.24599 4.26516 4.37543 4.47763 4.58281 4.82558 4.83314 4.99424 5.01255 5.11481 5.17427 5.22278 5.27174 5.38500 5.50555 5.55250 5.61900 5.66831 5.73749 5.84001 5.88982 5.92659 6.06245 6.19110 6.22423 6.39438 6.70175 7.06242 7.12779 7.50761 7.51808 7.74646 8.02035 8.56879 9.13951 9.50225 10.00940 10.72659 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029672 B = 0.001911 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.424742 B =14649.850025 C =15317.835609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 H 0.082 0.918 4 C 0.096 3.904 5 N -0.624 5.624 6 C 0.609 3.391 7 O -0.520 6.520 8 C -0.020 4.020 9 C -0.130 4.130 10 C 0.004 3.996 11 F -0.127 7.127 12 C -0.003 4.003 13 N -0.531 5.531 14 H 0.427 0.573 15 C 0.115 3.885 16 C 0.074 3.926 17 H 0.056 0.944 18 N -0.658 5.658 19 C 0.046 3.954 20 C 0.440 3.560 21 O -0.585 6.585 22 N -0.562 5.562 23 C -0.301 4.301 24 H 0.103 0.897 25 C 0.023 3.977 26 N -0.900 5.900 27 Si 0.931 3.069 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.273 1.273 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.183 0.817 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.357 0.643 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.393 0.607 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 9.278 23.141 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 H 0.101 0.899 4 C -0.028 4.028 5 N -0.358 5.358 6 C 0.399 3.601 7 O -0.395 6.395 8 C -0.134 4.134 9 C -0.157 4.157 10 C -0.022 4.022 11 F -0.105 7.105 12 C -0.140 4.140 13 N -0.133 5.133 14 H 0.271 0.729 15 C -0.008 4.008 16 C -0.037 4.037 17 H 0.074 0.926 18 N -0.295 5.295 19 C -0.087 4.087 20 C 0.226 3.774 21 O -0.470 6.470 22 N -0.198 5.198 23 C -0.431 4.431 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.541 5.541 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.179 0.821 37 H 0.201 0.799 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.181 0.819 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.226 0.774 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.550 8.280 23.179 25.231 hybrid contribution -0.202 0.686 -1.070 1.287 sum 5.347 8.966 22.109 24.450 Atomic orbital electron populations 1.21771 0.92726 1.04304 1.01653 1.22169 0.97546 0.98867 0.93469 0.89925 1.22743 0.87334 0.95537 0.97177 1.48794 1.12446 1.56083 1.18471 1.16470 0.81230 0.78646 0.83787 1.90893 1.37872 1.44768 1.65995 1.20223 0.88589 1.12453 0.92105 1.21332 0.98536 1.04165 0.91678 1.16487 0.87486 1.11819 0.86401 1.91459 1.68052 1.94541 1.56497 1.21838 0.93789 1.08257 0.90074 1.42478 1.10789 1.50659 1.09377 0.72870 1.22511 0.99178 0.97612 0.81451 1.22386 0.92854 0.94381 0.94098 0.92618 1.60320 1.09104 1.46690 1.13340 1.21764 0.97607 1.00160 0.89136 1.19740 0.89671 0.84973 0.83066 1.90514 1.25650 1.60261 1.70536 1.41863 1.11513 1.55545 1.10872 1.19646 0.90629 1.38354 0.94454 0.87945 1.25277 0.97798 0.97623 0.97213 1.69602 1.21241 1.47419 1.15862 0.85910 0.80610 0.79330 0.78317 1.19928 1.20963 1.19861 0.89888 0.92601 0.91762 0.91083 0.89659 0.82144 0.79942 0.89036 0.89592 0.81927 0.89507 0.93660 0.77419 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 7.81 37.16 0.29 -0.87 16 2 C -0.10 -0.80 3.66 -89.22 -0.33 -1.12 16 3 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.10 0.66 5.37 -2.41 -0.01 0.64 16 5 N -0.62 -6.39 3.32 -170.84 -0.57 -6.96 16 6 C 0.61 7.41 7.86 -12.87 -0.10 7.31 16 7 O -0.52 -8.25 17.14 5.19 0.09 -8.16 16 8 C -0.02 -0.19 6.85 -81.98 -0.56 -0.76 16 9 C -0.13 -1.33 10.66 -39.06 -0.42 -1.74 16 10 C 0.00 0.03 7.98 -39.90 -0.32 -0.29 16 11 F -0.13 -1.27 17.32 2.25 0.04 -1.23 16 12 C 0.00 -0.02 11.90 -16.77 -0.20 -0.22 16 13 N -0.53 -3.41 5.39 -9.31 -0.05 -3.46 16 14 H 0.43 1.67 5.52 -40.82 -0.23 1.44 16 15 C 0.11 1.33 6.40 -2.40 -0.02 1.31 16 16 C 0.07 0.80 3.35 -66.31 -0.22 0.58 16 17 H 0.06 0.61 7.96 -51.93 -0.41 0.20 16 18 N -0.66 -9.16 4.97 -106.51 -0.53 -9.69 16 19 C 0.05 0.75 6.01 -4.98 -0.03 0.72 16 20 C 0.44 9.92 7.82 -10.99 -0.09 9.83 16 21 O -0.59 -15.09 15.78 5.55 0.09 -15.00 16 22 N -0.56 -13.88 5.29 -10.96 -0.06 -13.93 16 23 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 24 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 27 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 28 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 30 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 31 H 0.08 0.82 7.56 -51.93 -0.39 0.43 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.56 7.03 -51.93 -0.37 0.19 16 34 H 0.07 0.33 5.31 -51.93 -0.28 0.05 16 35 H 0.09 0.51 7.86 -51.93 -0.41 0.10 16 36 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.18 0.50 8.06 -52.49 -0.42 0.07 16 38 H 0.09 1.14 8.06 -51.93 -0.42 0.72 16 39 H 0.09 1.09 7.84 -51.93 -0.41 0.68 16 40 H 0.36 5.06 5.85 -39.29 -0.23 4.83 16 41 H 0.09 1.34 7.88 -51.93 -0.41 0.93 16 42 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 43 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -33.44 368.71 -7.46 -40.90 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.49 Total: 12.22 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -2.24 Total: 7.51 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.48 Total: -57.55 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.18 Total: -23.16 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.44 -7.46 -40.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281428373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.297 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds