Wall clock time and date at job start Tue Mar 31 2020 21:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.30648 * 2 1 4 4 C 1.54387 * 110.34354 * 122.28645 * 2 1 3 5 5 N 1.48151 * 104.61894 * 142.73908 * 4 2 1 6 6 C 1.34769 * 127.83982 * 140.43284 * 5 4 2 7 7 O 1.21697 * 120.00017 * 187.12023 * 6 5 4 8 8 C 1.46657 * 120.00246 * 7.12006 * 6 5 4 9 9 C 1.37925 * 126.21618 * 187.57493 * 8 6 5 10 10 C 1.39935 * 107.10884 * 180.02562 * 9 8 6 11 11 F 1.35095 * 126.07675 * 180.02562 * 10 9 8 12 12 C 1.35573 * 107.84065 * 0.02562 * 10 9 8 13 13 N 1.35744 * 108.83089 * 359.73307 * 12 10 9 14 14 H 0.96999 * 125.67590 * 180.29614 * 13 12 10 15 15 C 1.48153 * 104.32141 * 320.41465 * 5 4 2 16 16 C 1.54285 * 110.34341 * 237.82571 * 2 1 3 17 17 H 1.08993 * 110.34801 * 122.15204 * 16 2 1 18 18 N 1.46903 * 110.34471 * 359.97438 * 16 2 1 19 19 C 1.46898 * 111.00078 * 163.92386 * 18 16 2 20 20 C 1.50698 * 109.46902 * 180.02562 * 19 18 16 21 21 O 1.21288 * 120.00461 * 359.97438 * 20 19 18 22 22 N 1.34775 * 119.99843 * 180.02562 * 20 19 18 23 23 C 1.37106 * 120.00031 * 179.97438 * 22 20 19 24 24 H 1.07992 * 120.00004 * 0.02562 * 23 22 20 25 25 C 1.38951 * 119.99892 * 180.02562 * 23 22 20 26 26 N 1.31409 * 120.00209 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99842 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47180 * 59.99787 * 27 25 23 29 29 H 1.48495 * 109.46930 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47072 * 299.99643 * 27 25 23 31 31 H 1.09006 * 109.46976 * 176.38813 * 1 2 3 32 32 H 1.09001 * 109.47522 * 296.37931 * 1 2 3 33 33 H 1.08997 * 109.47234 * 56.38505 * 1 2 3 34 34 H 1.09001 * 110.40729 * 261.51957 * 4 2 1 35 35 H 1.08998 * 110.40835 * 23.83900 * 4 2 1 36 36 H 1.07996 * 126.44728 * 0.02562 * 9 8 6 37 37 H 1.07999 * 125.58133 * 179.97438 * 12 10 9 38 38 H 1.09002 * 110.40513 * 280.79899 * 15 5 4 39 39 H 1.09002 * 110.40508 * 158.37199 * 15 5 4 40 40 H 1.00908 * 110.99364 * 39.97551 * 18 16 2 41 41 H 1.09004 * 109.46990 * 60.00595 * 19 18 16 42 42 H 1.08996 * 109.47487 * 300.00948 * 19 18 16 43 43 H 0.97000 * 120.00224 * 0.02562 * 22 20 19 44 44 H 0.97003 * 120.00336 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0667 -0.7732 1.2238 5 7 3.2664 -1.4824 0.7212 6 6 4.4423 -1.6680 1.3530 7 8 5.3817 -2.1620 0.7576 8 6 4.5899 -1.2746 2.7581 9 6 5.7628 -1.2686 3.4838 10 6 5.4467 -0.8270 4.7735 11 9 6.3145 -0.6766 5.7979 12 6 4.1148 -0.5769 4.8121 13 7 3.5840 -0.8401 3.5908 14 1 2.6507 -0.7403 3.3462 15 6 2.8802 -1.9416 -0.6333 16 6 2.0663 -0.7703 -1.2245 17 1 2.7080 -0.1265 -1.8259 18 7 0.9524 -1.2808 -2.0348 19 6 1.4121 -1.6743 -3.3733 20 6 0.2445 -2.1910 -4.1737 21 8 -0.8617 -2.2284 -3.6778 22 7 0.4297 -2.6126 -5.4403 23 6 -0.6325 -3.0833 -6.1684 24 1 -1.6176 -3.1157 -5.7271 25 6 -0.4415 -3.5185 -7.4741 26 7 0.7571 -3.4785 -8.0113 27 14 -1.8889 -4.1590 -8.4663 28 1 -2.9149 -3.0926 -8.5900 29 1 -1.4240 -4.5573 -9.8191 30 1 -2.4783 -5.3357 -7.7786 31 1 -0.3633 -1.0257 -0.0647 32 1 -0.3634 0.4566 0.9206 33 1 -0.3633 0.5689 -0.8558 34 1 2.3401 -0.0814 2.0205 35 1 1.3227 -1.4861 1.5791 36 1 6.7411 -1.5516 3.1244 37 1 3.5667 -0.2223 5.6724 38 1 2.2640 -2.8385 -0.5692 39 1 3.7673 -2.1313 -1.2377 40 1 0.2073 -0.6028 -2.0931 41 1 2.1659 -2.4565 -3.2832 42 1 1.8441 -0.8100 -3.8778 43 1 1.3145 -2.5839 -5.8367 44 1 0.8904 -3.7820 -8.9230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281428373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:13 Heat of formation + Delta-G solvation = -66.924035 kcal Electronic energy + Delta-G solvation = -28554.785836 eV Core-core repulsion = 24229.232363 eV Total energy + Delta-G solvation = -4325.553473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.54775 -42.52886 -40.92088 -40.06689 -39.08619 -36.25942 -35.64671 -33.47392 -33.14571 -32.10399 -31.09441 -29.53487 -28.04097 -27.35529 -25.91990 -24.64745 -22.89972 -22.04296 -21.38385 -21.10278 -20.42540 -19.93121 -19.21259 -17.85055 -17.71917 -17.17058 -17.05688 -16.75484 -16.68529 -16.43978 -16.27754 -16.06821 -15.70805 -15.51021 -15.36250 -15.07451 -14.80295 -14.58954 -14.36527 -14.08110 -13.95675 -13.59399 -13.45801 -13.24464 -13.04983 -12.90164 -12.79981 -12.70563 -12.42939 -12.15174 -12.12218 -11.84603 -11.69833 -11.49330 -11.39533 -10.34067 -10.16120 -10.01742 -9.94752 -9.41343 -9.33158 -8.46359 -5.95322 0.18359 1.34974 1.39947 1.41975 1.52808 1.56920 1.92059 2.05183 2.09681 2.28928 2.89342 3.16257 3.21065 3.38334 3.47496 3.57823 3.76764 3.86058 4.01433 4.20845 4.22522 4.24255 4.28653 4.32643 4.45665 4.47129 4.54413 4.56730 4.70978 4.75338 4.82464 4.83561 4.94102 5.09291 5.18719 5.37440 5.40888 5.54126 5.69112 5.85750 6.06791 6.21246 6.30365 6.41002 6.59360 6.85575 7.12242 7.56322 8.10539 8.70700 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029672 B = 0.001911 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.424742 B =14649.850025 C =15317.835609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.101 0.899 4 C 0.094 3.906 5 N -0.620 5.620 6 C 0.607 3.393 7 O -0.572 6.572 8 C -0.038 4.038 9 C -0.144 4.144 10 C -0.029 4.029 11 F -0.136 7.136 12 C 0.039 3.961 13 N -0.513 5.513 14 H 0.441 0.559 15 C 0.115 3.885 16 C 0.076 3.924 17 H 0.059 0.941 18 N -0.663 5.663 19 C 0.060 3.940 20 C 0.440 3.560 21 O -0.619 6.619 22 N -0.574 5.574 23 C -0.333 4.333 24 H 0.082 0.918 25 C -0.015 4.015 26 N -0.921 5.921 27 Si 0.994 3.006 28 H -0.270 1.270 29 H -0.273 1.273 30 H -0.272 1.272 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.148 0.852 37 H 0.230 0.770 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.357 0.643 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.395 0.605 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 10.739 25.094 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.119 0.881 4 C -0.028 4.028 5 N -0.353 5.353 6 C 0.398 3.602 7 O -0.451 6.451 8 C -0.152 4.152 9 C -0.172 4.172 10 C -0.053 4.053 11 F -0.115 7.115 12 C -0.099 4.099 13 N -0.116 5.116 14 H 0.289 0.711 15 C -0.008 4.008 16 C -0.035 4.035 17 H 0.077 0.923 18 N -0.300 5.300 19 C -0.073 4.073 20 C 0.228 3.772 21 O -0.505 6.505 22 N -0.212 5.212 23 C -0.463 4.463 24 H 0.100 0.900 25 C -0.215 4.215 26 N -0.562 5.562 27 Si 0.817 3.183 28 H -0.195 1.195 29 H -0.197 1.197 30 H -0.197 1.197 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.166 0.834 37 H 0.246 0.754 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.180 0.820 41 H 0.115 0.885 42 H 0.084 0.916 43 H 0.229 0.771 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.301 9.765 25.138 27.309 hybrid contribution 0.173 0.263 -1.566 1.597 sum 4.474 10.028 23.572 26.004 Atomic orbital electron populations 1.21714 0.92486 1.03026 1.02797 1.22173 0.97568 0.99412 0.92050 0.88058 1.22988 0.86147 0.96133 0.97499 1.48787 1.12916 1.55665 1.17886 1.16780 0.80949 0.77962 0.84551 1.90857 1.39686 1.47270 1.67299 1.19740 0.89514 1.14584 0.91352 1.21421 0.98548 1.04436 0.92797 1.16685 0.88794 1.13976 0.85892 1.91432 1.68619 1.94786 1.56648 1.22475 0.92658 1.04297 0.90465 1.42434 1.10869 1.49386 1.08872 0.71148 1.22378 0.98357 0.97752 0.82357 1.22406 0.91905 0.94287 0.94905 0.92328 1.60282 1.10242 1.47430 1.12032 1.21600 0.94862 1.01040 0.89783 1.20770 0.90856 0.83096 0.82515 1.90483 1.27740 1.61175 1.71130 1.41956 1.11089 1.56385 1.11725 1.19644 0.90700 1.40334 0.95581 0.90042 1.26066 1.00434 0.97309 0.97656 1.69672 1.22614 1.47648 1.16284 0.84978 0.77549 0.78650 0.77107 1.19519 1.19729 1.19721 0.92069 0.89640 0.92710 0.88059 0.88133 0.83426 0.75395 0.90121 0.91343 0.81959 0.88463 0.91630 0.77105 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 7.81 71.98 0.56 -1.33 16 2 C -0.09 -1.20 3.66 -9.89 -0.04 -1.23 16 3 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 4 C 0.09 1.00 5.37 86.53 0.46 1.46 16 5 N -0.62 -12.00 3.32 -812.64 -2.69 -14.69 16 6 C 0.61 14.68 7.86 86.44 0.68 15.36 16 7 O -0.57 -19.05 17.14 -4.34 -0.07 -19.12 16 8 C -0.04 -0.70 6.85 40.36 0.28 -0.42 16 9 C -0.14 -2.93 10.66 22.61 0.24 -2.69 16 10 C -0.03 -0.47 7.98 22.06 0.18 -0.30 16 11 F -0.14 -2.57 17.32 44.97 0.78 -1.79 16 12 C 0.04 0.33 11.90 83.47 0.99 1.32 16 13 N -0.51 -4.74 5.39 -183.38 -0.99 -5.72 16 14 H 0.44 1.37 5.52 -92.71 -0.51 0.86 16 15 C 0.11 2.63 6.40 86.53 0.55 3.18 16 16 C 0.08 1.54 3.35 45.82 0.15 1.69 16 17 H 0.06 1.20 7.96 -2.39 -0.02 1.18 16 18 N -0.66 -18.02 4.97 -490.90 -2.44 -20.46 16 19 C 0.06 1.93 6.01 85.56 0.51 2.45 16 20 C 0.44 20.14 7.82 87.66 0.69 20.82 16 21 O -0.62 -32.56 15.78 -3.06 -0.05 -32.61 16 22 N -0.57 -29.02 5.29 -306.99 -1.62 -30.64 16 23 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 24 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 25 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 26 N -0.92 -49.75 13.05 21.66 0.28 -49.46 16 27 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 29 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 30 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 31 H 0.06 1.11 7.56 -2.38 -0.02 1.09 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.85 7.03 -2.39 -0.02 0.83 16 34 H 0.10 0.46 5.31 -2.39 -0.01 0.45 16 35 H 0.10 0.83 7.86 -2.39 -0.02 0.81 16 36 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.23 -0.19 8.06 -2.91 -0.02 -0.21 16 38 H 0.08 2.03 8.06 -2.39 -0.02 2.01 16 39 H 0.07 1.80 7.84 -2.39 -0.02 1.78 16 40 H 0.36 9.85 5.85 -89.69 -0.52 9.33 16 41 H 0.10 2.98 7.88 -2.39 -0.02 2.96 16 42 H 0.07 1.89 8.09 -2.39 -0.02 1.87 16 43 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 44 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -76.32 368.71 1.08 -75.24 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: -0.69 Total: 32.51 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 6.54 Total: 22.16 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -7.46 Total: -120.98 kcal Atomic # 8 Polarization: -51.61 SS G_CDS: -0.12 Total: -51.73 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.78 Total: -1.79 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -76.32 1.08 -75.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281428373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.317 kcal (2) G-P(sol) polarization free energy of solvation -76.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds