Wall clock time and date at job start Tue Mar 31 2020 21:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00167 * 2 1 4 4 C 1.52995 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47153 * 174.99542 * 4 3 2 6 6 C 1.53002 * 109.47360 * 54.99717 * 4 3 2 7 7 N 1.46500 * 109.47375 * 294.99890 * 4 3 2 8 8 C 1.34774 * 120.00142 * 205.00116 * 7 4 3 9 9 S 1.71199 * 119.99796 * 0.27171 * 8 7 4 10 10 N 1.34776 * 120.00056 * 179.97438 * 8 7 4 11 11 C 1.39890 * 119.99977 * 174.65548 * 10 8 7 12 12 C 1.38939 * 120.04546 * 318.17725 * 11 10 8 13 13 C 1.38119 * 120.03680 * 179.71665 * 12 11 10 14 14 C 1.38211 * 120.12562 * 0.55601 * 13 12 11 15 15 C 1.38769 * 120.08778 * 359.71967 * 14 13 12 16 16 O 1.35895 * 120.02040 * 179.97438 * 15 14 13 17 17 C 1.42903 * 116.99978 * 0.02562 * 16 15 14 18 18 C 1.53004 * 109.46937 * 180.02562 * 17 16 15 19 19 C 1.50705 * 109.46569 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00575 * 0.02562 * 19 18 17 21 21 C 1.37886 * 119.99248 * 180.02562 * 19 18 17 22 22 N 1.31507 * 120.00392 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99432 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47096 * 90.00054 * 23 21 19 25 25 H 1.48496 * 109.46845 * 209.99598 * 23 21 19 26 26 H 1.48493 * 109.47159 * 329.99817 * 23 21 19 27 27 C 1.38619 * 119.95708 * 0.02562 * 15 14 13 28 28 H 1.08996 * 109.47663 * 300.00352 * 1 2 3 29 29 H 1.09002 * 109.46689 * 60.00758 * 1 2 3 30 30 H 1.09008 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47217 * 59.99322 * 3 2 1 32 32 H 1.09005 * 109.46485 * 299.99472 * 3 2 1 33 33 H 1.09000 * 109.46990 * 59.99447 * 6 4 3 34 34 H 1.08994 * 109.47445 * 179.97438 * 6 4 3 35 35 H 1.09004 * 109.47273 * 300.00322 * 6 4 3 36 36 H 0.97002 * 119.99789 * 24.99678 * 7 4 3 37 37 H 0.97002 * 120.00221 * 354.66445 * 10 8 7 38 38 H 1.07999 * 119.98066 * 359.96854 * 12 11 10 39 39 H 1.08000 * 119.93180 * 180.26929 * 13 12 11 40 40 H 1.08004 * 119.95744 * 179.70180 * 14 13 12 41 41 H 1.09006 * 109.47015 * 300.00347 * 17 16 15 42 42 H 1.08994 * 109.47026 * 60.00355 * 17 16 15 43 43 H 1.08990 * 109.46982 * 299.99664 * 18 17 16 44 44 H 1.09003 * 109.47150 * 60.00430 * 18 17 16 45 45 H 0.97000 * 120.00050 * 180.02562 * 22 21 19 46 46 H 1.08004 * 120.06118 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9785 2.1765 -0.0890 6 6 3.9791 0.3193 -1.1806 7 7 3.9757 0.5644 1.2527 8 6 5.2195 0.7946 1.7179 9 16 6.2826 1.8173 0.8491 10 7 5.6244 0.2244 2.8700 11 6 6.9487 0.3717 3.2958 12 6 7.9889 0.2725 2.3801 13 6 9.2961 0.4238 2.7996 14 6 9.5737 0.6627 4.1323 15 6 8.5392 0.7571 5.0523 16 8 8.8137 0.9916 6.3624 17 6 10.1896 1.1309 6.7221 18 6 10.3000 1.3876 8.2264 19 6 11.7512 1.5339 8.6058 20 1 12.5180 1.4524 7.8496 21 6 12.0999 1.7719 9.9184 22 7 11.1662 1.8717 10.8391 23 14 13.8986 1.9540 10.3886 24 1 14.2955 3.3812 10.2844 25 1 14.0952 1.4862 11.7841 26 1 14.7350 1.1393 9.4710 27 6 7.2256 0.6111 4.6343 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8898 32 1 1.6887 1.8463 -0.8901 33 1 3.6515 0.7807 -2.1122 34 1 5.0656 0.2336 -1.1804 35 1 3.5360 -0.6726 -1.0910 36 1 3.3720 -0.0119 1.7470 37 1 4.9974 -0.2882 3.4040 38 1 7.7750 0.0809 1.3389 39 1 10.1031 0.3506 2.0856 40 1 10.5972 0.7758 4.4582 41 1 10.7256 0.2159 6.4697 42 1 10.6245 1.9688 6.1773 43 1 9.7641 2.3024 8.4791 44 1 9.8653 0.5494 8.7709 45 1 11.4116 2.0394 11.7625 46 1 6.4191 0.6847 5.3488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054955387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:53 Heat of formation + Delta-G solvation = -41.849973 kcal Electronic energy + Delta-G solvation = -25599.613138 eV Core-core repulsion = 21809.067383 eV Total energy + Delta-G solvation = -3790.545755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41299 -39.52044 -38.52937 -37.21008 -35.39823 -33.35483 -31.98956 -30.87980 -29.54413 -28.73096 -27.96419 -26.33554 -25.20366 -24.40717 -22.96766 -22.08833 -21.70398 -20.56123 -18.96630 -18.56991 -17.40344 -16.84074 -16.42609 -16.10413 -16.01094 -15.84042 -15.49693 -15.25876 -15.16992 -14.92358 -14.72178 -14.43295 -13.71663 -13.53298 -13.24056 -12.89428 -12.72415 -12.48601 -12.38027 -12.30857 -11.85515 -11.76640 -11.53221 -11.43333 -11.34123 -11.24044 -10.88655 -10.77219 -10.49966 -10.38023 -10.08078 -9.80689 -9.64294 -9.28994 -8.56460 -8.43951 -8.09589 -7.86836 -7.07328 -6.09482 -4.13930 0.80815 1.53568 1.70783 1.85158 2.23902 3.02160 3.17330 3.28809 3.34766 3.37681 3.89021 3.98842 4.15516 4.41023 4.42818 4.66007 4.73237 4.79567 4.92613 5.00263 5.02889 5.08541 5.22102 5.27132 5.33832 5.36942 5.40920 5.52866 5.66993 5.71544 5.95016 6.01663 6.02588 6.06553 6.11836 6.40372 6.46141 6.52045 6.56549 6.65954 6.77553 6.97326 7.07551 7.51430 7.65090 7.82145 8.06836 8.24970 8.91710 9.50423 11.02068 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028637 B = 0.001736 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.530894 B =16129.423977 C =16768.503423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.049 3.951 4 C 0.148 3.852 5 H 0.129 0.871 6 C -0.159 4.159 7 N -0.675 5.675 8 C 0.559 3.441 9 S -0.616 6.616 10 N -0.627 5.627 11 C 0.157 3.843 12 C -0.119 4.119 13 C -0.072 4.072 14 C -0.204 4.204 15 C 0.151 3.849 16 O -0.316 6.316 17 C 0.065 3.935 18 C 0.025 3.975 19 C -0.526 4.526 20 H 0.059 0.941 21 C 0.060 3.940 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.167 4.167 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.402 0.598 37 H 0.406 0.594 38 H 0.138 0.862 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.263 0.737 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.017 -5.662 -23.744 32.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.310 6.310 3 C -0.029 4.029 4 C 0.043 3.957 5 H 0.146 0.854 6 C -0.218 4.218 7 N -0.305 5.305 8 C 0.201 3.799 9 S -0.487 6.487 10 N -0.252 5.252 11 C 0.065 3.935 12 C -0.141 4.141 13 C -0.091 4.091 14 C -0.223 4.223 15 C 0.103 3.897 16 O -0.229 6.229 17 C -0.009 4.009 18 C -0.012 4.012 19 C -0.565 4.565 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.528 5.528 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.188 4.188 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.239 0.761 37 H 0.244 0.756 38 H 0.156 0.844 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.374 -5.022 -24.073 32.582 hybrid contribution -0.343 -0.594 1.287 1.458 sum -21.717 -5.616 -22.786 31.974 Atomic orbital electron populations 1.22778 0.80471 1.03073 1.00254 1.87880 1.20156 1.27449 1.95497 1.22952 0.92511 0.85514 1.01899 1.21592 0.91579 1.00414 0.82089 0.85373 1.22061 1.03309 1.00048 0.96368 1.45059 1.11520 1.48721 1.25173 1.22416 0.87353 0.85138 0.85035 1.93511 1.51670 1.42204 1.61316 1.42171 1.11688 1.50652 1.20650 1.16909 0.81089 1.02911 0.92619 1.21024 0.91201 1.01966 0.99891 1.20712 0.95931 0.97650 0.94832 1.21462 0.99450 1.07438 0.93955 1.18699 0.92642 0.93790 0.84559 1.86150 1.31204 1.84911 1.20653 1.23345 0.77131 0.99602 1.00773 1.19128 0.97575 0.98439 0.86072 1.20985 0.91397 1.50355 0.93723 0.92293 1.24989 0.97804 0.94997 0.96391 1.69974 1.32578 1.48567 1.01680 0.86484 0.84625 0.78468 0.77794 1.20486 1.21088 1.19736 1.19929 0.95461 1.09039 0.94359 0.93922 0.93747 0.89400 0.92363 0.90796 0.91169 0.90671 0.91847 0.76148 0.75638 0.84406 0.85535 0.84975 0.93033 0.92966 0.95404 0.95435 0.92739 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 11.01 101.05 1.11 1.21 16 2 O -0.39 -2.10 9.55 -35.23 -0.34 -2.43 16 3 C 0.05 0.22 5.68 37.15 0.21 0.43 16 4 C 0.15 0.96 2.74 -67.93 -0.19 0.77 16 5 H 0.13 1.03 6.81 -51.93 -0.35 0.68 16 6 C -0.16 -1.08 9.24 37.16 0.34 -0.74 16 7 N -0.68 -4.67 5.06 -55.52 -0.28 -4.95 16 8 C 0.56 5.74 7.71 -86.92 -0.67 5.07 16 9 S -0.62 -8.88 23.89 -107.50 -2.57 -11.44 16 10 N -0.63 -6.10 5.33 -11.42 -0.06 -6.16 16 11 C 0.16 2.07 5.90 -83.73 -0.49 1.57 16 12 C -0.12 -1.64 7.85 -39.37 -0.31 -1.95 16 13 C -0.07 -1.00 10.03 -39.63 -0.40 -1.40 16 14 C -0.20 -3.21 9.04 -39.39 -0.36 -3.57 16 15 C 0.15 2.61 6.68 -39.24 -0.26 2.35 16 16 O -0.32 -6.45 10.13 -19.41 -0.20 -6.64 16 17 C 0.07 1.40 4.68 37.16 0.17 1.57 16 18 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 19 C -0.53 -14.69 9.11 -34.43 -0.31 -15.00 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 23 Si 0.90 21.32 29.54 -169.99 -5.02 16.29 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C -0.17 -2.47 9.91 -39.25 -0.39 -2.85 16 28 H 0.04 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.04 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.09 0.22 8.14 -51.92 -0.42 -0.20 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.67 7.50 -51.93 -0.39 0.28 16 35 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 36 H 0.40 1.95 8.40 -40.82 -0.34 1.60 16 37 H 0.41 2.60 8.84 -40.82 -0.36 2.24 16 38 H 0.14 1.90 6.27 -49.91 -0.31 1.58 16 39 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.13 2.03 6.29 -52.48 -0.33 1.70 16 41 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 42 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 LS Contribution 392.79 15.07 5.92 5.92 Total: -1.00 -33.78 392.79 -10.64 -44.42 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.05 Total: 1.14 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -1.78 Total: -10.41 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.39 Total: -36.84 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.53 Total: -9.08 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -2.57 Total: -11.44 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.78 -10.64 -44.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054955387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.571 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds