Wall clock time and date at job start Tue Mar 31 2020 21:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00167 * 2 1 4 4 C 1.52995 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47153 * 174.99542 * 4 3 2 6 6 C 1.53002 * 109.47360 * 54.99717 * 4 3 2 7 7 N 1.46500 * 109.47375 * 294.99890 * 4 3 2 8 8 C 1.34774 * 120.00142 * 205.00116 * 7 4 3 9 9 S 1.71199 * 119.99796 * 0.27171 * 8 7 4 10 10 N 1.34776 * 120.00056 * 179.97438 * 8 7 4 11 11 C 1.39890 * 119.99977 * 174.65548 * 10 8 7 12 12 C 1.38939 * 120.04546 * 318.17725 * 11 10 8 13 13 C 1.38119 * 120.03680 * 179.71665 * 12 11 10 14 14 C 1.38211 * 120.12562 * 0.55601 * 13 12 11 15 15 C 1.38769 * 120.08778 * 359.71967 * 14 13 12 16 16 O 1.35895 * 120.02040 * 179.97438 * 15 14 13 17 17 C 1.42903 * 116.99978 * 0.02562 * 16 15 14 18 18 C 1.53004 * 109.46937 * 180.02562 * 17 16 15 19 19 C 1.50705 * 109.46569 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00575 * 0.02562 * 19 18 17 21 21 C 1.37886 * 119.99248 * 180.02562 * 19 18 17 22 22 N 1.31507 * 120.00392 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99432 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47096 * 90.00054 * 23 21 19 25 25 H 1.48496 * 109.46845 * 209.99598 * 23 21 19 26 26 H 1.48493 * 109.47159 * 329.99817 * 23 21 19 27 27 C 1.38619 * 119.95708 * 0.02562 * 15 14 13 28 28 H 1.08996 * 109.47663 * 300.00352 * 1 2 3 29 29 H 1.09002 * 109.46689 * 60.00758 * 1 2 3 30 30 H 1.09008 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47217 * 59.99322 * 3 2 1 32 32 H 1.09005 * 109.46485 * 299.99472 * 3 2 1 33 33 H 1.09000 * 109.46990 * 59.99447 * 6 4 3 34 34 H 1.08994 * 109.47445 * 179.97438 * 6 4 3 35 35 H 1.09004 * 109.47273 * 300.00322 * 6 4 3 36 36 H 0.97002 * 119.99789 * 24.99678 * 7 4 3 37 37 H 0.97002 * 120.00221 * 354.66445 * 10 8 7 38 38 H 1.07999 * 119.98066 * 359.96854 * 12 11 10 39 39 H 1.08000 * 119.93180 * 180.26929 * 13 12 11 40 40 H 1.08004 * 119.95744 * 179.70180 * 14 13 12 41 41 H 1.09006 * 109.47015 * 300.00347 * 17 16 15 42 42 H 1.08994 * 109.47026 * 60.00355 * 17 16 15 43 43 H 1.08990 * 109.46982 * 299.99664 * 18 17 16 44 44 H 1.09003 * 109.47150 * 60.00430 * 18 17 16 45 45 H 0.97000 * 120.00050 * 180.02562 * 22 21 19 46 46 H 1.08004 * 120.06118 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9785 2.1765 -0.0890 6 6 3.9791 0.3193 -1.1806 7 7 3.9757 0.5644 1.2527 8 6 5.2195 0.7946 1.7179 9 16 6.2826 1.8173 0.8491 10 7 5.6244 0.2244 2.8700 11 6 6.9487 0.3717 3.2958 12 6 7.9889 0.2725 2.3801 13 6 9.2961 0.4238 2.7996 14 6 9.5737 0.6627 4.1323 15 6 8.5392 0.7571 5.0523 16 8 8.8137 0.9916 6.3624 17 6 10.1896 1.1309 6.7221 18 6 10.3000 1.3876 8.2264 19 6 11.7512 1.5339 8.6058 20 1 12.5180 1.4524 7.8496 21 6 12.0999 1.7719 9.9184 22 7 11.1662 1.8717 10.8391 23 14 13.8986 1.9540 10.3886 24 1 14.2955 3.3812 10.2844 25 1 14.0952 1.4862 11.7841 26 1 14.7350 1.1393 9.4710 27 6 7.2256 0.6111 4.6343 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8898 32 1 1.6887 1.8463 -0.8901 33 1 3.6515 0.7807 -2.1122 34 1 5.0656 0.2336 -1.1804 35 1 3.5360 -0.6726 -1.0910 36 1 3.3720 -0.0119 1.7470 37 1 4.9974 -0.2882 3.4040 38 1 7.7750 0.0809 1.3389 39 1 10.1031 0.3506 2.0856 40 1 10.5972 0.7758 4.4582 41 1 10.7256 0.2159 6.4697 42 1 10.6245 1.9688 6.1773 43 1 9.7641 2.3024 8.4791 44 1 9.8653 0.5494 8.7709 45 1 11.4116 2.0394 11.7625 46 1 6.4191 0.6847 5.3488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054955387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:52 Heat of formation + Delta-G solvation = -62.890783 kcal Electronic energy + Delta-G solvation = -25600.525536 eV Core-core repulsion = 21809.067383 eV Total energy + Delta-G solvation = -3791.458153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46834 -40.46149 -39.36478 -38.10836 -36.33335 -35.40752 -32.75517 -32.55507 -30.96347 -29.87016 -28.34121 -27.06255 -26.67462 -25.41521 -24.19725 -23.23529 -22.81493 -21.92866 -19.83953 -19.72388 -18.54105 -17.94549 -17.30124 -17.13017 -16.97450 -16.88412 -16.79321 -16.57719 -16.37431 -16.04980 -15.52242 -15.42726 -14.67170 -14.50932 -14.32750 -14.27897 -14.11658 -13.58994 -13.24367 -13.15630 -13.02336 -12.82021 -12.75271 -12.61882 -12.52970 -12.34271 -12.16060 -12.05094 -12.01418 -11.60136 -11.56195 -11.37356 -10.86873 -10.68846 -10.60260 -9.60170 -9.34453 -8.94040 -8.25188 -8.21556 -6.38318 -0.17360 0.48684 0.61018 0.83333 1.32728 1.42623 1.44452 1.55598 2.24545 2.40262 2.61246 2.75040 2.81648 3.09530 3.69145 3.89029 3.98025 4.14857 4.18436 4.23284 4.31694 4.32233 4.40261 4.43857 4.46178 4.54454 4.56768 4.58539 4.63459 4.75764 4.80994 4.90442 4.92682 5.09413 5.19808 5.32896 5.37074 5.39725 5.45600 5.50099 5.56276 5.68822 5.75729 5.97861 6.09805 6.11757 6.26131 6.56188 6.76523 7.31691 8.87817 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028637 B = 0.001736 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.530894 B =16129.423977 C =16768.503423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.055 3.945 4 C 0.146 3.854 5 H 0.115 0.885 6 C -0.151 4.151 7 N -0.649 5.649 8 C 0.579 3.421 9 S -0.694 6.694 10 N -0.615 5.615 11 C 0.166 3.834 12 C -0.116 4.116 13 C -0.071 4.071 14 C -0.210 4.210 15 C 0.118 3.882 16 O -0.337 6.337 17 C 0.084 3.916 18 C 0.028 3.972 19 C -0.546 4.546 20 H 0.071 0.929 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.975 3.025 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.167 4.167 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.417 0.583 37 H 0.426 0.574 38 H 0.141 0.859 39 H 0.150 0.850 40 H 0.133 0.867 41 H 0.063 0.937 42 H 0.059 0.941 43 H -0.002 1.002 44 H 0.001 0.999 45 H 0.266 0.734 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.775 -6.383 -25.177 34.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.022 4.022 4 C 0.042 3.958 5 H 0.133 0.867 6 C -0.210 4.210 7 N -0.277 5.277 8 C 0.217 3.783 9 S -0.567 6.567 10 N -0.242 5.242 11 C 0.072 3.928 12 C -0.138 4.138 13 C -0.090 4.090 14 C -0.230 4.230 15 C 0.072 3.928 16 O -0.252 6.252 17 C 0.010 3.990 18 C -0.010 4.010 19 C -0.584 4.584 20 H 0.089 0.911 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.798 3.202 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.188 4.188 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.257 0.743 37 H 0.267 0.733 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.151 0.849 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.016 0.984 44 H 0.019 0.981 45 H 0.075 0.925 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.208 -5.774 -25.533 34.329 hybrid contribution -0.339 -0.432 1.615 1.705 sum -22.547 -6.205 -23.919 33.451 Atomic orbital electron populations 1.22907 0.79314 1.03767 1.00979 1.87845 1.21403 1.27690 1.95668 1.22898 0.90607 0.85610 1.03115 1.21671 0.93177 0.99514 0.81481 0.86731 1.21974 1.01691 1.00230 0.97109 1.45085 1.10251 1.47425 1.24980 1.21908 0.87652 0.84275 0.84481 1.93707 1.53821 1.45805 1.63348 1.41924 1.10980 1.50633 1.20638 1.16850 0.82423 1.01672 0.91854 1.21204 0.91432 1.01059 1.00063 1.20968 0.96836 0.96737 0.94456 1.21538 0.99172 1.07757 0.94517 1.18985 0.94159 0.96226 0.83457 1.86062 1.30091 1.86097 1.22911 1.22885 0.78330 1.00403 0.97409 1.18970 0.96719 0.95853 0.89411 1.21422 0.92315 1.50251 0.94428 0.91086 1.26017 1.02926 0.94351 0.96325 1.70113 1.35188 1.49475 1.02179 0.85302 0.78462 0.78805 0.77605 1.19697 1.20673 1.18302 1.20043 0.94900 1.08594 0.95253 0.93264 0.92965 0.88811 0.91557 0.89223 0.89851 0.92966 0.91760 0.74292 0.73293 0.84086 0.83188 0.84903 0.91832 0.92251 0.98376 0.98101 0.92498 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 11.01 113.37 1.25 1.35 16 2 O -0.41 -3.30 9.55 -148.98 -1.42 -4.72 16 3 C 0.05 0.36 5.68 71.98 0.41 0.77 16 4 C 0.15 1.64 2.74 44.99 0.12 1.76 16 5 H 0.12 1.74 6.81 -2.39 -0.02 1.73 16 6 C -0.15 -1.86 9.24 71.98 0.66 -1.19 16 7 N -0.65 -7.59 5.06 -329.58 -1.67 -9.26 16 8 C 0.58 10.99 7.71 179.06 1.38 12.37 16 9 S -0.69 -19.84 23.89 -56.49 -1.35 -21.19 16 10 N -0.62 -10.75 5.33 -190.04 -1.01 -11.76 16 11 C 0.17 4.14 5.90 38.15 0.23 4.37 16 12 C -0.12 -3.06 7.85 22.41 0.18 -2.89 16 13 C -0.07 -1.89 10.03 22.23 0.22 -1.66 16 14 C -0.21 -6.55 9.04 22.39 0.20 -6.35 16 15 C 0.12 4.10 6.68 22.49 0.15 4.25 16 16 O -0.34 -14.10 10.13 -92.37 -0.94 -15.04 16 17 C 0.08 3.67 4.68 71.98 0.34 4.00 16 18 C 0.03 1.51 5.34 29.85 0.16 1.67 16 19 C -0.55 -30.88 9.11 25.60 0.23 -30.65 16 20 H 0.07 3.75 7.74 -2.91 -0.02 3.72 16 21 C 0.00 0.14 5.46 84.66 0.46 0.60 16 22 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 23 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 26 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 27 C -0.17 -4.82 9.91 22.49 0.22 -4.60 16 28 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.09 0.26 8.14 -2.38 -0.02 0.24 16 31 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.91 7.50 -2.39 -0.02 0.89 16 35 H 0.06 0.78 7.56 -2.39 -0.02 0.76 16 36 H 0.42 2.79 8.40 -92.71 -0.78 2.01 16 37 H 0.43 4.29 8.84 -92.71 -0.82 3.47 16 38 H 0.14 3.73 6.27 -4.55 -0.03 3.70 16 39 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 40 H 0.13 4.03 6.29 -2.91 -0.02 4.02 16 41 H 0.06 2.58 7.66 -2.38 -0.02 2.56 16 42 H 0.06 2.47 7.66 -2.39 -0.02 2.45 16 43 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -74.99 392.79 1.53 -73.46 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -0.61 Total: 15.33 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 6.22 Total: -16.19 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -2.40 Total: -77.30 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -2.36 Total: -19.76 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -19.84 SS G_CDS: -1.35 Total: -21.19 kcal Total: -74.99 1.53 -73.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054955387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.566 kcal (2) G-P(sol) polarization free energy of solvation -74.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds