Wall clock time and date at job start Tue Mar 31 2020 20:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.47249 * 2 1 4 4 O 1.42898 * 109.46852 * 240.00361 * 2 1 3 5 5 C 1.52997 * 109.47167 * 120.00068 * 2 1 3 6 6 C 1.52995 * 109.47181 * 184.99963 * 5 2 1 7 7 N 1.46901 * 109.47435 * 180.02562 * 6 5 2 8 8 C 1.46906 * 110.99722 * 66.04397 * 7 6 5 9 9 C 1.46893 * 111.00071 * 190.00151 * 7 6 5 10 10 C 1.50707 * 109.47226 * 169.99880 * 9 7 6 11 11 O 1.21294 * 119.99830 * 0.02562 * 10 9 7 12 12 N 1.34772 * 120.00097 * 179.97438 * 10 9 7 13 13 C 1.39941 * 119.99707 * 174.26732 * 12 10 9 14 14 C 1.38681 * 120.11474 * 335.21971 * 13 12 10 15 15 C 1.38221 * 120.01933 * 179.97438 * 14 13 12 16 16 C 1.38389 * 120.25039 * 0.02842 * 15 14 13 17 17 C 1.38084 * 120.22999 * 359.97092 * 16 15 14 18 18 C 1.38999 * 119.97769 * 0.02562 * 17 16 15 19 19 S 1.76194 * 120.12467 * 180.02562 * 18 17 16 20 20 C 1.76200 * 100.00131 * 354.39507 * 19 18 17 21 21 H 1.08001 * 119.99794 * 5.02778 * 20 19 18 22 22 C 1.38685 * 120.00013 * 185.03289 * 20 19 18 23 23 N 1.31656 * 120.00385 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00061 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46836 * 59.99818 * 24 22 20 26 26 H 1.48498 * 109.47359 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47076 * 299.99861 * 24 22 20 28 28 H 1.08997 * 109.46993 * 299.99815 * 1 2 3 29 29 H 1.08996 * 109.46985 * 59.99921 * 1 2 3 30 30 H 1.08994 * 109.46863 * 179.97438 * 1 2 3 31 31 H 0.96700 * 113.99986 * 299.99834 * 4 2 1 32 32 H 1.08998 * 109.46843 * 64.99953 * 5 2 1 33 33 H 1.08996 * 109.47417 * 305.00019 * 5 2 1 34 34 H 1.08998 * 109.47240 * 60.00234 * 6 5 2 35 35 H 1.09003 * 109.47006 * 299.99968 * 6 5 2 36 36 H 1.09007 * 109.46696 * 183.95585 * 8 7 6 37 37 H 1.08993 * 109.47226 * 303.95687 * 8 7 6 38 38 H 1.08999 * 109.47096 * 63.96123 * 8 7 6 39 39 H 1.09001 * 109.47622 * 49.99823 * 9 7 6 40 40 H 1.09004 * 109.47082 * 289.99168 * 9 7 6 41 41 H 0.96997 * 120.00226 * 354.26119 * 12 10 9 42 42 H 1.08000 * 119.98816 * 0.26619 * 14 13 12 43 43 H 1.07995 * 119.87063 * 180.02562 * 15 14 13 44 44 H 1.07997 * 119.88652 * 179.97438 * 16 15 14 45 45 H 1.08002 * 120.01396 * 180.02562 * 17 16 15 46 46 H 0.96996 * 120.00332 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2492 6 6 3.5649 -0.6133 1.3136 7 7 4.0547 -1.3063 2.5127 8 6 3.8101 -2.7520 2.4220 9 6 5.4790 -1.0263 2.7377 10 6 5.8848 -1.5444 4.0935 11 8 5.0679 -2.0932 4.8024 12 7 7.1556 -1.3986 4.5179 13 6 7.5051 -1.7702 5.8210 14 6 6.5429 -1.7936 6.8195 15 6 6.8901 -2.1614 8.1059 16 6 8.1967 -2.5068 8.4036 17 6 9.1630 -2.4870 7.4174 18 6 8.8244 -2.1187 6.1205 19 16 10.0541 -2.0928 4.8590 20 6 11.4879 -2.4408 5.8221 21 1 11.3896 -2.6741 6.8720 22 6 12.7427 -2.4151 5.2320 23 7 12.8626 -2.1311 3.9520 24 14 14.2629 -2.7833 6.2532 25 1 14.1600 -4.1529 6.8179 26 1 15.4706 -2.6922 5.3939 27 1 14.3666 -1.7982 7.3596 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.7210 -1.5951 -1.2330 32 1 1.7517 -1.7715 1.2055 33 1 1.6055 -0.2618 2.1369 34 1 3.8532 0.4369 1.3574 35 1 3.9995 -1.0728 0.4259 36 1 4.1181 -3.2316 3.3511 37 1 2.7480 -2.9311 2.2553 38 1 4.3830 -3.1660 1.5922 39 1 5.6493 0.0494 2.6939 40 1 6.0723 -1.5198 1.9678 41 1 7.8281 -1.0364 3.9200 42 1 5.5211 -1.5290 6.5909 43 1 6.1389 -2.1792 8.8815 44 1 8.4616 -2.7928 9.4108 45 1 10.1816 -2.7576 7.6535 46 1 13.7402 -2.1128 3.5394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072714524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:01 Heat of formation + Delta-G solvation = -55.477996 kcal Electronic energy + Delta-G solvation = -26192.271912 eV Core-core repulsion = 22401.135202 eV Total energy + Delta-G solvation = -3791.136710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.23933 -38.69478 -37.86318 -36.56561 -34.33803 -32.76950 -32.47800 -30.34019 -30.09239 -29.06528 -27.67499 -25.90231 -25.34269 -22.70873 -22.27929 -21.70742 -21.07411 -19.90162 -18.38217 -17.05469 -16.88199 -16.64417 -16.37574 -16.01431 -15.76862 -15.31208 -15.04882 -14.85763 -14.56982 -14.14185 -13.89669 -13.63377 -13.34655 -13.31219 -13.03741 -12.92890 -12.73713 -12.50775 -12.30229 -11.95783 -11.74060 -11.67871 -11.60727 -11.31348 -11.21956 -11.18264 -11.09977 -10.96504 -10.40592 -10.36032 -10.10565 -9.83174 -9.57427 -9.28939 -8.78930 -8.67260 -8.44358 -7.63859 -6.54415 -6.52965 -4.25371 1.86532 2.09390 2.90605 2.99130 3.10709 3.14023 3.16121 3.34645 3.85190 3.96994 4.06231 4.44166 4.47546 4.63937 4.74971 4.81874 4.88964 4.92370 5.03659 5.09434 5.17118 5.22470 5.32323 5.38283 5.42040 5.49901 5.57920 5.65648 5.68219 5.68833 5.82848 5.88405 5.90106 6.07215 6.21070 6.23904 6.58065 6.72821 6.87154 6.90348 6.92839 7.13060 7.22887 7.28393 7.44246 7.69708 7.80427 8.11677 8.42365 8.94338 10.53052 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016908 B = 0.002293 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.594561 B =12207.080034 C =13618.101198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.101 3.899 3 H 0.099 0.901 4 O -0.565 6.565 5 C -0.147 4.147 6 C 0.057 3.943 7 N -0.524 5.524 8 C 0.015 3.985 9 C 0.036 3.964 10 C 0.512 3.488 11 O -0.511 6.511 12 N -0.658 5.658 13 C 0.128 3.872 14 C -0.112 4.112 15 C -0.146 4.146 16 C -0.119 4.119 17 C -0.128 4.128 18 C -0.108 4.108 19 S 0.029 5.971 20 C -0.545 4.545 21 H 0.095 0.905 22 C 0.077 3.923 23 N -0.866 5.866 24 Si 0.924 3.076 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.270 1.270 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.373 0.627 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.021 0.979 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.411 0.589 42 H 0.138 0.862 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.138 0.862 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.719 3.268 -5.550 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.041 3.959 3 H 0.117 0.883 4 O -0.370 6.370 5 C -0.185 4.185 6 C -0.070 4.070 7 N -0.248 5.248 8 C -0.133 4.133 9 C -0.095 4.095 10 C 0.299 3.701 11 O -0.386 6.386 12 N -0.303 5.303 13 C 0.026 3.974 14 C -0.134 4.134 15 C -0.169 4.169 16 C -0.140 4.140 17 C -0.154 4.154 18 C -0.225 4.225 19 S 0.283 5.717 20 C -0.692 4.692 21 H 0.112 0.888 22 C -0.133 4.133 23 N -0.500 5.500 24 Si 0.750 3.250 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.195 1.195 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.221 0.779 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.248 0.752 42 H 0.155 0.845 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.155 0.845 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.051 3.888 -6.353 20.455 hybrid contribution 1.647 -1.089 1.106 2.263 sum -17.404 2.799 -5.247 18.392 Atomic orbital electron populations 1.22488 0.96369 1.02560 1.02791 1.21933 0.92811 0.96851 0.84257 0.88328 1.86595 1.77227 1.29051 1.44124 1.22323 0.95796 1.01542 0.98871 1.22096 0.95100 0.99192 0.90658 1.61664 1.14760 1.10631 1.37782 1.22625 1.01240 0.87161 1.02249 1.21973 0.90168 1.02771 0.94626 1.20498 0.81713 0.79310 0.88609 1.90608 1.50645 1.41018 1.56376 1.43434 1.10841 1.62773 1.13230 1.17192 0.92665 1.03641 0.83873 1.21101 0.99422 1.01257 0.91630 1.20763 0.96052 1.04118 0.95981 1.20960 0.93291 1.01205 0.98517 1.21281 1.00403 1.01967 0.91741 1.22450 0.97132 1.02386 1.00541 1.83050 0.97228 1.82786 1.08631 1.23219 0.91363 1.55754 0.98857 0.88787 1.25088 0.99116 0.93648 0.95434 1.69984 1.25424 1.44228 1.10334 0.86108 0.79904 0.79414 0.79619 1.19491 1.20591 1.19473 0.91408 0.91874 0.92348 0.77946 0.91410 0.89993 0.90719 0.93940 0.89168 0.91464 0.96019 0.87561 0.91436 0.75203 0.84487 0.87025 0.87140 0.84452 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 9.54 37.16 0.35 -0.65 16 2 C 0.10 0.67 3.59 -26.73 -0.10 0.58 16 3 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 4 O -0.56 -4.42 12.88 -35.23 -0.45 -4.87 16 5 C -0.15 -1.09 4.82 -26.73 -0.13 -1.22 16 6 C 0.06 0.52 4.85 -3.83 -0.02 0.50 16 7 N -0.52 -6.03 4.50 -244.37 -1.10 -7.13 16 8 C 0.01 0.17 9.01 60.07 0.54 0.71 16 9 C 0.04 0.42 5.45 -4.98 -0.03 0.39 16 10 C 0.51 7.97 7.36 -10.98 -0.08 7.89 16 11 O -0.51 -9.23 11.48 5.55 0.06 -9.16 16 12 N -0.66 -11.13 5.17 -9.70 -0.05 -11.18 16 13 C 0.13 2.54 6.44 -83.44 -0.54 2.00 16 14 C -0.11 -2.11 8.72 -39.42 -0.34 -2.46 16 15 C -0.15 -2.54 10.04 -39.53 -0.40 -2.94 16 16 C -0.12 -2.15 10.03 -39.58 -0.40 -2.55 16 17 C -0.13 -2.69 9.26 -39.36 -0.36 -3.05 16 18 C -0.11 -2.36 6.12 -38.75 -0.24 -2.60 16 19 S 0.03 0.71 20.37 -107.50 -2.19 -1.48 16 20 C -0.54 -14.36 9.08 30.90 0.28 -14.08 16 21 H 0.09 2.38 4.81 -52.49 -0.25 2.13 16 22 C 0.08 2.03 5.49 -17.46 -0.10 1.93 16 23 N -0.87 -23.71 13.22 55.48 0.73 -22.98 16 24 Si 0.92 20.12 29.55 -169.99 -5.02 15.10 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.37 1.74 9.05 45.56 0.41 2.15 16 32 H 0.07 0.49 6.47 -51.93 -0.34 0.15 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.64 7.93 -51.93 -0.41 0.23 16 35 H 0.04 0.40 7.80 -51.93 -0.41 0.00 16 36 H 0.09 1.28 5.88 -51.92 -0.31 0.98 16 37 H 0.07 0.66 6.30 -51.93 -0.33 0.33 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.11 1.04 7.93 -51.93 -0.41 0.63 16 40 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 41 H 0.41 6.51 7.65 -40.82 -0.31 6.20 16 42 H 0.14 2.55 5.78 -52.49 -0.30 2.24 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.14 2.97 4.93 -52.49 -0.26 2.71 16 46 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 384.22 15.07 5.79 5.79 Total: -1.00 -30.98 384.22 -9.63 -40.61 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -5.85 Total: 10.84 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.55 Total: -15.53 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -0.42 Total: -41.29 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.39 Total: -14.04 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.19 Total: -1.48 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.98 -9.63 -40.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072714524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.872 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds