Wall clock time and date at job start Tue Mar 31 2020 20:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46961 * 2 1 4 4 O 1.42905 * 109.46979 * 119.99800 * 2 1 3 5 5 C 1.52997 * 109.47323 * 239.99722 * 2 1 3 6 6 C 1.53004 * 109.47074 * 175.00192 * 5 2 1 7 7 N 1.46893 * 109.47102 * 180.02562 * 6 5 2 8 8 C 1.46903 * 110.99709 * 293.95274 * 7 6 5 9 9 C 1.46895 * 111.00107 * 170.00147 * 7 6 5 10 10 C 1.50707 * 109.47281 * 189.99812 * 9 7 6 11 11 O 1.21297 * 119.99563 * 359.97438 * 10 9 7 12 12 N 1.34772 * 120.00002 * 179.97438 * 10 9 7 13 13 C 1.39942 * 119.99799 * 175.96006 * 12 10 9 14 14 C 1.38681 * 120.11707 * 34.38985 * 13 12 10 15 15 C 1.38215 * 120.01772 * 179.97438 * 14 13 12 16 16 C 1.38392 * 120.25617 * 0.02738 * 15 14 13 17 17 C 1.38091 * 120.22500 * 359.97283 * 16 15 14 18 18 C 1.38989 * 119.97664 * 0.02562 * 17 16 15 19 19 S 1.76199 * 120.12408 * 180.02562 * 18 17 16 20 20 C 1.76201 * 99.99925 * 353.11271 * 19 18 17 21 21 H 1.08000 * 119.99974 * 5.09920 * 20 19 18 22 22 C 1.38688 * 119.99678 * 185.09953 * 20 19 18 23 23 N 1.31653 * 120.00309 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99717 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47179 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47209 * 120.00243 * 24 22 20 27 27 H 1.48498 * 109.47401 * 239.99897 * 24 22 20 28 28 H 1.09000 * 109.47251 * 300.00132 * 1 2 3 29 29 H 1.08998 * 109.46671 * 60.00429 * 1 2 3 30 30 H 1.09004 * 109.46961 * 179.97438 * 1 2 3 31 31 H 0.96708 * 113.99533 * 299.99873 * 4 2 1 32 32 H 1.09004 * 109.47091 * 55.00432 * 5 2 1 33 33 H 1.09004 * 109.47061 * 295.00091 * 5 2 1 34 34 H 1.08996 * 109.47098 * 59.99859 * 6 5 2 35 35 H 1.08999 * 109.46651 * 299.99732 * 6 5 2 36 36 H 1.08998 * 109.47007 * 296.04689 * 8 7 6 37 37 H 1.08998 * 109.47698 * 56.04791 * 8 7 6 38 38 H 1.09003 * 109.47152 * 176.04829 * 8 7 6 39 39 H 1.08998 * 109.47520 * 69.99811 * 9 7 6 40 40 H 1.09003 * 109.47119 * 309.99325 * 9 7 6 41 41 H 0.96998 * 120.00320 * 355.95432 * 12 10 9 42 42 H 1.08000 * 119.98619 * 0.26383 * 14 13 12 43 43 H 1.08003 * 119.87617 * 179.97438 * 15 14 13 44 44 H 1.07991 * 119.89241 * 179.97438 * 16 15 14 45 45 H 1.08001 * 120.00955 * 180.02562 * 17 16 15 46 46 H 0.97003 * 119.99851 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7213 -1.2492 6 6 3.5650 -0.6133 -1.3135 7 7 4.0546 -1.3053 -2.5132 8 6 3.8101 -2.7511 -2.4236 9 6 5.4790 -1.0253 -2.7379 10 6 5.8847 -1.5422 -4.0942 11 8 5.0676 -2.0904 -4.8035 12 7 7.1553 -1.3954 -4.5189 13 6 7.5531 -1.9493 -5.7409 14 6 6.6636 -2.0015 -6.8036 15 6 7.0587 -2.5485 -8.0098 16 6 8.3409 -3.0465 -8.1630 17 6 9.2349 -2.9997 -7.1116 18 6 8.8477 -2.4517 -5.8945 19 16 9.9855 -2.3895 -4.5506 20 6 11.3187 -3.3160 -5.2354 21 1 11.2733 -3.6498 -6.2615 22 6 12.4262 -3.6165 -4.4566 23 7 12.4813 -3.2101 -3.2056 24 14 13.8393 -4.5994 -5.1824 25 1 13.5344 -4.9342 -6.5967 26 1 15.0851 -3.7933 -5.1226 27 1 14.0221 -5.8514 -4.4052 28 1 -0.3634 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7210 -0.2700 1.9980 32 1 1.6055 -0.2618 -2.1370 33 1 1.7517 -1.7716 -1.2055 34 1 3.9995 -1.0728 -0.4258 35 1 3.8532 0.4369 -1.3573 36 1 4.3829 -3.1657 -1.5942 37 1 2.7479 -2.9304 -2.2571 38 1 4.1180 -3.2300 -3.3531 39 1 6.0723 -1.5193 -1.9685 40 1 5.6493 0.0504 -2.6934 41 1 7.7941 -0.9057 -3.9776 42 1 5.6633 -1.6103 -6.6900 43 1 6.3640 -2.5884 -8.8358 44 1 8.6433 -3.4730 -9.1079 45 1 10.2348 -3.3890 -7.2351 46 1 13.2558 -3.4207 -2.6609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072714526.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:03 Heat of formation + Delta-G solvation = -55.790651 kcal Electronic energy + Delta-G solvation = -26224.857322 eV Core-core repulsion = 22433.707054 eV Total energy + Delta-G solvation = -3791.150268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14307 -38.54424 -37.81704 -36.54716 -34.28320 -32.76086 -32.61385 -30.32947 -30.02530 -29.01384 -27.60159 -25.89080 -25.31927 -22.62830 -22.20016 -21.49787 -20.85241 -19.87535 -18.35432 -17.80638 -16.97375 -16.75320 -16.06350 -15.77231 -15.57600 -15.12665 -15.00214 -14.75016 -14.45849 -14.25128 -13.91101 -13.71589 -13.28619 -13.09175 -12.94597 -12.91166 -12.75417 -12.42000 -12.27255 -11.97666 -11.68130 -11.67546 -11.53899 -11.26581 -11.24701 -11.09898 -11.04315 -10.88202 -10.39380 -10.31677 -10.02265 -9.74693 -9.56040 -9.29897 -8.78506 -8.63532 -8.36470 -7.67824 -6.53696 -6.52903 -4.24326 1.89314 2.10793 2.91320 3.02807 3.08589 3.16733 3.21793 3.37816 3.90104 3.97192 4.00882 4.45468 4.52964 4.64868 4.81888 4.88019 4.90130 4.98680 5.09376 5.14721 5.22796 5.32580 5.35929 5.39988 5.51576 5.61547 5.66038 5.66449 5.69372 5.71084 5.90212 5.91147 5.97294 6.16574 6.24984 6.27496 6.59681 6.79814 6.92210 6.93574 6.98182 7.15267 7.23111 7.32147 7.45311 7.70243 7.82391 8.13138 8.48996 8.95281 10.53663 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.002394 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.433178 B =11691.704557 C =13212.831616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.100 3.900 3 H 0.055 0.945 4 O -0.567 6.567 5 C -0.109 4.109 6 C 0.057 3.943 7 N -0.524 5.524 8 C 0.015 3.985 9 C 0.036 3.964 10 C 0.514 3.486 11 O -0.512 6.512 12 N -0.660 5.660 13 C 0.124 3.876 14 C -0.101 4.101 15 C -0.149 4.149 16 C -0.115 4.115 17 C -0.131 4.131 18 C -0.103 4.103 19 S 0.031 5.969 20 C -0.544 4.544 21 H 0.095 0.905 22 C 0.077 3.923 23 N -0.866 5.866 24 Si 0.925 3.075 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.277 1.277 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.375 0.625 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.022 0.978 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.409 0.591 42 H 0.131 0.869 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.138 0.862 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.840 7.357 4.951 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.041 3.959 3 H 0.073 0.927 4 O -0.373 6.373 5 C -0.147 4.147 6 C -0.071 4.071 7 N -0.249 5.249 8 C -0.132 4.132 9 C -0.095 4.095 10 C 0.300 3.700 11 O -0.387 6.387 12 N -0.305 5.305 13 C 0.022 3.978 14 C -0.123 4.123 15 C -0.173 4.173 16 C -0.136 4.136 17 C -0.157 4.157 18 C -0.220 4.220 19 S 0.285 5.715 20 C -0.691 4.691 21 H 0.113 0.887 22 C -0.133 4.133 23 N -0.499 5.499 24 Si 0.750 3.250 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.203 1.203 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.222 0.778 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.041 0.959 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.246 0.754 42 H 0.149 0.851 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.155 0.845 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.206 7.277 5.115 20.262 hybrid contribution 1.526 -0.873 -0.175 1.766 sum -16.680 6.404 4.940 18.538 Atomic orbital electron populations 1.22504 0.96464 1.02902 1.02429 1.21816 0.92681 0.95344 0.86056 0.92673 1.86573 1.77045 1.57699 1.15935 1.21634 0.95415 1.01889 0.95763 1.22103 0.95249 0.98880 0.90835 1.61673 1.14699 1.10805 1.37674 1.22621 1.01387 0.87022 1.02216 1.21962 0.90274 1.02618 0.94673 1.20506 0.81687 0.79378 0.88385 1.90635 1.50176 1.41730 1.56198 1.43345 1.11875 1.54544 1.20749 1.17143 0.92941 1.02162 0.85542 1.20975 0.99429 1.00607 0.91295 1.20757 0.96329 1.03112 0.97087 1.20968 0.93873 1.00458 0.98259 1.21289 1.00749 1.01757 0.91901 1.22531 0.97368 1.00810 1.01330 1.83086 1.09387 1.63838 1.15154 1.23313 1.03817 1.40281 1.01727 0.88711 1.25093 0.98419 0.95234 0.94598 1.70006 1.30213 1.43050 1.06677 0.85998 0.80285 0.79258 0.79439 1.19134 1.20278 1.20271 0.92462 0.91428 0.91769 0.77794 0.89681 0.90917 0.93772 0.90984 0.95934 0.91380 0.89211 0.91280 0.87782 0.75446 0.85117 0.87022 0.87126 0.84472 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.07 9.53 37.16 0.35 -0.72 16 2 C 0.10 0.72 3.58 -26.73 -0.10 0.62 16 3 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 4 O -0.57 -4.61 12.86 -35.23 -0.45 -5.06 16 5 C -0.11 -0.97 4.85 -26.73 -0.13 -1.10 16 6 C 0.06 0.58 4.85 -3.83 -0.02 0.56 16 7 N -0.52 -6.55 4.50 -244.37 -1.10 -7.65 16 8 C 0.02 0.20 9.01 60.07 0.54 0.74 16 9 C 0.04 0.45 5.45 -4.98 -0.03 0.42 16 10 C 0.51 8.27 7.40 -10.98 -0.08 8.19 16 11 O -0.51 -9.58 11.73 5.54 0.07 -9.52 16 12 N -0.66 -11.25 5.02 -9.70 -0.05 -11.30 16 13 C 0.12 2.46 6.32 -83.44 -0.53 1.93 16 14 C -0.10 -1.91 8.69 -39.43 -0.34 -2.25 16 15 C -0.15 -2.61 10.04 -39.53 -0.40 -3.01 16 16 C -0.11 -2.08 10.03 -39.58 -0.40 -2.48 16 17 C -0.13 -2.76 9.26 -39.36 -0.36 -3.12 16 18 C -0.10 -2.27 6.12 -38.75 -0.24 -2.50 16 19 S 0.03 0.76 20.53 -107.50 -2.21 -1.45 16 20 C -0.54 -14.43 9.07 30.90 0.28 -14.15 16 21 H 0.10 2.43 4.83 -52.49 -0.25 2.17 16 22 C 0.08 2.02 5.49 -17.46 -0.10 1.93 16 23 N -0.87 -23.86 13.22 55.48 0.73 -23.12 16 24 Si 0.92 20.28 29.55 -169.99 -5.02 15.26 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.38 1.51 9.08 45.56 0.41 1.92 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.72 6.47 -51.93 -0.34 0.38 16 34 H 0.04 0.49 7.80 -51.93 -0.41 0.08 16 35 H 0.07 0.65 7.93 -51.93 -0.41 0.23 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.79 6.30 -51.93 -0.33 0.46 16 38 H 0.09 1.39 5.88 -51.93 -0.31 1.09 16 39 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 40 H 0.10 1.04 7.93 -51.93 -0.41 0.63 16 41 H 0.41 6.37 7.96 -40.82 -0.32 6.05 16 42 H 0.13 2.43 6.20 -52.49 -0.33 2.10 16 43 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 44 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.14 2.99 4.95 -52.49 -0.26 2.73 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -31.60 385.17 -9.65 -41.25 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -5.89 Total: 10.73 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -1.54 Total: -14.95 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.41 Total: -42.07 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.39 Total: -14.58 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.21 Total: -1.45 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.60 -9.65 -41.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072714526.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.539 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds