Wall clock time and date at job start Tue Mar 31 2020 20:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46961 * 2 1 4 4 O 1.42905 * 109.46979 * 119.99800 * 2 1 3 5 5 C 1.52997 * 109.47323 * 239.99722 * 2 1 3 6 6 C 1.53004 * 109.47074 * 175.00192 * 5 2 1 7 7 N 1.46893 * 109.47102 * 180.02562 * 6 5 2 8 8 C 1.46903 * 110.99709 * 293.95274 * 7 6 5 9 9 C 1.46895 * 111.00107 * 170.00147 * 7 6 5 10 10 C 1.50707 * 109.47281 * 189.99812 * 9 7 6 11 11 O 1.21297 * 119.99563 * 359.97438 * 10 9 7 12 12 N 1.34772 * 120.00002 * 179.97438 * 10 9 7 13 13 C 1.39942 * 119.99799 * 175.96006 * 12 10 9 14 14 C 1.38681 * 120.11707 * 34.38985 * 13 12 10 15 15 C 1.38215 * 120.01772 * 179.97438 * 14 13 12 16 16 C 1.38392 * 120.25617 * 0.02738 * 15 14 13 17 17 C 1.38091 * 120.22500 * 359.97283 * 16 15 14 18 18 C 1.38989 * 119.97664 * 0.02562 * 17 16 15 19 19 S 1.76199 * 120.12408 * 180.02562 * 18 17 16 20 20 C 1.76201 * 99.99925 * 353.11271 * 19 18 17 21 21 H 1.08000 * 119.99974 * 5.09920 * 20 19 18 22 22 C 1.38688 * 119.99678 * 185.09953 * 20 19 18 23 23 N 1.31653 * 120.00309 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99717 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47179 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47209 * 120.00243 * 24 22 20 27 27 H 1.48498 * 109.47401 * 239.99897 * 24 22 20 28 28 H 1.09000 * 109.47251 * 300.00132 * 1 2 3 29 29 H 1.08998 * 109.46671 * 60.00429 * 1 2 3 30 30 H 1.09004 * 109.46961 * 179.97438 * 1 2 3 31 31 H 0.96708 * 113.99533 * 299.99873 * 4 2 1 32 32 H 1.09004 * 109.47091 * 55.00432 * 5 2 1 33 33 H 1.09004 * 109.47061 * 295.00091 * 5 2 1 34 34 H 1.08996 * 109.47098 * 59.99859 * 6 5 2 35 35 H 1.08999 * 109.46651 * 299.99732 * 6 5 2 36 36 H 1.08998 * 109.47007 * 296.04689 * 8 7 6 37 37 H 1.08998 * 109.47698 * 56.04791 * 8 7 6 38 38 H 1.09003 * 109.47152 * 176.04829 * 8 7 6 39 39 H 1.08998 * 109.47520 * 69.99811 * 9 7 6 40 40 H 1.09003 * 109.47119 * 309.99325 * 9 7 6 41 41 H 0.96998 * 120.00320 * 355.95432 * 12 10 9 42 42 H 1.08000 * 119.98619 * 0.26383 * 14 13 12 43 43 H 1.08003 * 119.87617 * 179.97438 * 15 14 13 44 44 H 1.07991 * 119.89241 * 179.97438 * 16 15 14 45 45 H 1.08001 * 120.00955 * 180.02562 * 17 16 15 46 46 H 0.97003 * 119.99851 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7213 -1.2492 6 6 3.5650 -0.6133 -1.3135 7 7 4.0546 -1.3053 -2.5132 8 6 3.8101 -2.7511 -2.4236 9 6 5.4790 -1.0253 -2.7379 10 6 5.8847 -1.5422 -4.0942 11 8 5.0676 -2.0904 -4.8035 12 7 7.1553 -1.3954 -4.5189 13 6 7.5531 -1.9493 -5.7409 14 6 6.6636 -2.0015 -6.8036 15 6 7.0587 -2.5485 -8.0098 16 6 8.3409 -3.0465 -8.1630 17 6 9.2349 -2.9997 -7.1116 18 6 8.8477 -2.4517 -5.8945 19 16 9.9855 -2.3895 -4.5506 20 6 11.3187 -3.3160 -5.2354 21 1 11.2733 -3.6498 -6.2615 22 6 12.4262 -3.6165 -4.4566 23 7 12.4813 -3.2101 -3.2056 24 14 13.8393 -4.5994 -5.1824 25 1 13.5344 -4.9342 -6.5967 26 1 15.0851 -3.7933 -5.1226 27 1 14.0221 -5.8514 -4.4052 28 1 -0.3634 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7210 -0.2700 1.9980 32 1 1.6055 -0.2618 -2.1370 33 1 1.7517 -1.7716 -1.2055 34 1 3.9995 -1.0728 -0.4258 35 1 3.8532 0.4369 -1.3573 36 1 4.3829 -3.1657 -1.5942 37 1 2.7479 -2.9304 -2.2571 38 1 4.1180 -3.2300 -3.3531 39 1 6.0723 -1.5193 -1.9685 40 1 5.6493 0.0504 -2.6934 41 1 7.7941 -0.9057 -3.9776 42 1 5.6633 -1.6103 -6.6900 43 1 6.3640 -2.5884 -8.8358 44 1 8.6433 -3.4730 -9.1079 45 1 10.2348 -3.3890 -7.2351 46 1 13.2558 -3.4207 -2.6609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072714526.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:03 Heat of formation + Delta-G solvation = -77.963638 kcal Electronic energy + Delta-G solvation = -26225.818815 eV Core-core repulsion = 22433.707054 eV Total energy + Delta-G solvation = -3792.111761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48971 -39.60670 -38.85463 -37.50111 -35.70475 -34.72875 -33.30488 -31.89027 -31.16111 -29.93028 -28.74779 -27.86004 -26.23646 -23.95609 -23.56253 -22.53031 -21.62091 -21.21400 -20.12371 -18.41398 -18.37603 -18.12330 -17.57286 -17.04749 -16.88837 -16.45363 -15.98303 -15.95332 -15.65982 -15.32362 -15.02373 -14.95552 -14.62513 -14.54299 -14.19494 -14.00119 -13.85279 -13.39509 -13.37169 -13.02240 -12.97929 -12.86143 -12.82008 -12.71455 -12.57891 -12.48489 -12.10019 -11.81341 -11.63740 -11.55537 -11.41477 -11.22500 -10.87459 -10.66617 -10.63377 -10.33551 -9.37052 -9.18856 -8.50159 -8.35923 -6.24037 0.38954 0.54178 1.26653 1.36627 1.45330 1.58048 1.62564 2.02750 2.17138 2.84933 2.94231 2.98402 3.16300 3.46301 3.68403 3.86204 4.08723 4.11907 4.18545 4.23305 4.27166 4.31243 4.42588 4.44969 4.52251 4.58732 4.67767 4.68260 4.71307 4.73456 4.86599 5.00215 5.01958 5.06452 5.20119 5.28704 5.34857 5.35758 5.43998 5.49580 5.66177 5.72282 5.86953 6.04023 6.12413 6.21860 6.48546 6.95469 6.95607 7.16394 8.58739 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.002394 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.433178 B =11691.704557 C =13212.831616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.102 3.898 3 H 0.068 0.932 4 O -0.588 6.588 5 C -0.108 4.108 6 C 0.060 3.940 7 N -0.533 5.533 8 C 0.021 3.979 9 C 0.041 3.959 10 C 0.513 3.487 11 O -0.539 6.539 12 N -0.660 5.660 13 C 0.125 3.875 14 C -0.112 4.112 15 C -0.132 4.132 16 C -0.113 4.113 17 C -0.146 4.146 18 C -0.125 4.125 19 S -0.012 6.012 20 C -0.563 4.563 21 H 0.096 0.904 22 C 0.025 3.975 23 N -0.902 5.902 24 Si 0.992 3.008 25 H -0.260 1.260 26 H -0.270 1.270 27 H -0.273 1.273 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.392 0.608 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.035 0.965 35 H 0.089 0.911 36 H 0.021 0.979 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.134 0.866 41 H 0.415 0.585 42 H 0.136 0.864 43 H 0.150 0.850 44 H 0.145 0.855 45 H 0.124 0.876 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.063 7.953 4.113 21.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.043 3.957 3 H 0.086 0.914 4 O -0.397 6.397 5 C -0.146 4.146 6 C -0.067 4.067 7 N -0.257 5.257 8 C -0.127 4.127 9 C -0.090 4.090 10 C 0.301 3.699 11 O -0.415 6.415 12 N -0.306 5.306 13 C 0.023 3.977 14 C -0.133 4.133 15 C -0.154 4.154 16 C -0.134 4.134 17 C -0.171 4.171 18 C -0.242 4.242 19 S 0.239 5.761 20 C -0.710 4.710 21 H 0.114 0.886 22 C -0.181 4.181 23 N -0.537 5.537 24 Si 0.814 3.186 25 H -0.184 1.184 26 H -0.195 1.195 27 H -0.198 1.198 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.242 0.758 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.039 0.961 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.152 0.848 41 H 0.252 0.748 42 H 0.153 0.847 43 H 0.168 0.832 44 H 0.163 0.837 45 H 0.142 0.858 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.480 7.896 4.268 21.448 hybrid contribution 1.710 -1.022 0.005 1.992 sum -17.770 6.874 4.273 19.526 Atomic orbital electron populations 1.22462 0.95446 1.02533 1.03462 1.21810 0.93422 0.95434 0.85047 0.91369 1.86526 1.77516 1.58569 1.17088 1.21630 0.94530 1.01389 0.97045 1.22154 0.95955 0.99298 0.89265 1.61692 1.14587 1.10384 1.39066 1.22501 1.02041 0.87577 1.00599 1.22008 0.90509 1.04266 0.92217 1.21173 0.80799 0.78509 0.89381 1.90616 1.50756 1.42839 1.57302 1.43440 1.12525 1.54453 1.20173 1.17353 0.92287 1.01217 0.86867 1.21188 0.99408 1.01087 0.91642 1.21229 0.96491 1.00294 0.97432 1.21284 0.93503 0.99917 0.98664 1.21373 1.00938 1.02085 0.92699 1.22494 0.97747 1.03072 1.00888 1.82933 1.10450 1.65277 1.17419 1.23656 1.04694 1.40601 1.02072 0.88595 1.26023 1.00910 0.96207 0.94937 1.70108 1.31173 1.44469 1.07944 0.84990 0.77036 0.77753 0.78851 1.18409 1.19492 1.19821 0.90975 0.90878 0.92818 0.75849 0.89397 0.92289 0.94686 0.89310 0.96093 0.90241 0.91901 0.90643 0.84794 0.74806 0.84671 0.83236 0.83739 0.85829 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.53 71.98 0.69 -1.09 16 2 C 0.10 1.28 3.58 30.60 0.11 1.39 16 3 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 4 O -0.59 -8.72 12.86 -148.98 -1.92 -10.63 16 5 C -0.11 -1.78 4.85 30.59 0.15 -1.63 16 6 C 0.06 1.13 4.85 86.31 0.42 1.55 16 7 N -0.53 -12.78 4.50 -927.06 -4.17 -16.95 16 8 C 0.02 0.54 9.01 127.69 1.15 1.70 16 9 C 0.04 0.97 5.45 85.56 0.47 1.44 16 10 C 0.51 16.32 7.40 87.66 0.65 16.97 16 11 O -0.54 -20.01 11.73 -3.08 -0.04 -20.04 16 12 N -0.66 -22.57 5.02 -302.98 -1.52 -24.10 16 13 C 0.12 4.93 6.32 38.31 0.24 5.17 16 14 C -0.11 -4.04 8.69 22.37 0.19 -3.84 16 15 C -0.13 -4.23 10.04 22.30 0.22 -4.01 16 16 C -0.11 -3.85 10.03 22.27 0.22 -3.63 16 17 C -0.15 -6.11 9.26 22.42 0.21 -5.90 16 18 C -0.13 -5.59 6.12 22.81 0.14 -5.45 16 19 S -0.01 -0.60 20.53 -56.49 -1.16 -1.76 16 20 C -0.56 -30.67 9.07 67.93 0.62 -30.05 16 21 H 0.10 5.04 4.83 -2.91 -0.01 5.02 16 22 C 0.03 1.36 5.49 84.83 0.47 1.82 16 23 N -0.90 -50.88 13.22 21.63 0.29 -50.60 16 24 Si 0.99 41.91 29.55 68.60 2.03 43.94 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.39 2.50 9.08 -74.05 -0.67 1.83 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.12 6.47 -2.39 -0.02 1.11 16 34 H 0.03 0.73 7.80 -2.39 -0.02 0.72 16 35 H 0.09 1.37 7.93 -2.39 -0.02 1.35 16 36 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.08 1.84 6.30 -2.39 -0.02 1.83 16 38 H 0.06 1.99 5.88 -2.39 -0.01 1.98 16 39 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 40 H 0.13 2.38 7.93 -2.39 -0.02 2.37 16 41 H 0.41 13.12 7.96 -92.71 -0.74 12.38 16 42 H 0.14 4.82 6.20 -2.91 -0.02 4.80 16 43 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 44 H 0.14 3.90 8.06 -2.92 -0.02 3.88 16 45 H 0.12 5.47 4.95 -2.91 -0.01 5.46 16 46 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -69.41 385.17 -0.94 -70.35 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.39 Total: 35.38 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 5.94 Total: -25.58 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -5.41 Total: -91.65 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -1.95 Total: -30.68 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -1.16 Total: -1.76 kcal Total: -69.41 -0.94 -70.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072714526.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.616 kcal (2) G-P(sol) polarization free energy of solvation -69.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds