Wall clock time and date at job start Tue Mar 31 2020 21:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46896 * 109.47436 * 2 1 4 4 C 1.48532 * 111.00142 * 57.10974 * 3 2 1 5 5 C 1.54938 * 103.22899 * 159.72698 * 4 3 2 6 6 C 1.54599 * 102.91940 * 322.58361 * 5 4 3 7 7 C 1.47906 * 111.00268 * 174.50515 * 3 2 1 8 8 H 1.08994 * 110.08347 * 333.60383 * 7 3 2 9 9 C 1.53002 * 109.91314 * 94.80208 * 7 3 2 10 10 N 1.46495 * 109.47314 * 298.24939 * 9 7 3 11 11 S 1.65604 * 120.00159 * 162.32336 * 10 9 7 12 12 O 1.42093 * 106.40316 * 311.46396 * 11 10 9 13 13 O 1.42100 * 106.40186 * 178.53948 * 11 10 9 14 14 C 1.76198 * 107.21466 * 65.00429 * 11 10 9 15 15 C 1.38635 * 119.75140 * 270.29531 * 14 11 10 16 16 C 1.37612 * 120.25181 * 180.30257 * 15 14 11 17 17 C 1.40717 * 119.74396 * 359.42615 * 16 15 14 18 18 C 1.41392 * 120.24632 * 180.29790 * 17 16 15 19 19 H 1.08004 * 119.99986 * 334.27239 * 18 17 16 20 20 C 1.39944 * 120.00569 * 154.27600 * 18 17 16 21 21 N 1.30830 * 119.99255 * 341.57339 * 20 18 17 22 22 Si 1.86792 * 120.00560 * 161.57139 * 20 18 17 23 23 H 1.48500 * 109.47212 * 94.95867 * 22 20 18 24 24 H 1.48498 * 109.47368 * 214.95912 * 22 20 18 25 25 H 1.48504 * 109.47177 * 334.95582 * 22 20 18 26 26 C 1.40713 * 119.51018 * 0.27848 * 17 16 15 27 27 C 1.37617 * 119.74507 * 359.97438 * 26 17 16 28 28 H 1.08993 * 109.47362 * 300.00582 * 1 2 3 29 29 H 1.09000 * 109.46516 * 60.00365 * 1 2 3 30 30 H 1.08997 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47769 * 239.99212 * 2 1 3 32 32 H 1.09005 * 109.46926 * 119.99847 * 2 1 3 33 33 H 1.08994 * 110.67101 * 41.28586 * 4 3 2 34 34 H 1.09007 * 110.81136 * 278.22687 * 4 3 2 35 35 H 1.09004 * 110.72392 * 204.23166 * 5 4 3 36 36 H 1.08993 * 110.87818 * 81.01043 * 5 4 3 37 37 H 1.09004 * 110.31019 * 263.04622 * 6 5 4 38 38 H 1.08997 * 110.39226 * 140.91753 * 6 5 4 39 39 H 1.09005 * 109.46848 * 178.25410 * 9 7 3 40 40 H 1.08993 * 109.47319 * 58.25359 * 9 7 3 41 41 H 0.97001 * 119.99812 * 342.32760 * 10 9 7 42 42 H 1.08000 * 119.87598 * 0.02562 * 15 14 11 43 43 H 1.07998 * 120.13345 * 179.69794 * 16 15 14 44 44 H 0.97005 * 119.99360 * 180.02562 * 21 20 18 45 45 H 1.08010 * 120.12846 * 180.02562 * 26 17 16 46 46 H 1.08004 * 119.87389 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4873 2.1378 1.1644 5 6 2.4739 3.3247 1.3003 6 6 3.8368 2.6828 0.9534 7 6 3.4923 1.4265 0.1322 8 1 3.8468 0.5354 0.6502 9 6 4.1375 1.5157 -1.2522 10 7 3.7907 0.3239 -2.0303 11 16 3.9659 0.3302 -3.6771 12 8 3.3537 1.5255 -4.1412 13 8 3.5852 -0.9631 -4.1261 14 6 5.6875 0.4882 -4.0177 15 6 6.2493 1.7485 -4.1519 16 6 7.5915 1.8837 -4.4241 17 6 8.3965 0.7369 -4.5542 18 6 9.7779 0.8637 -4.8275 19 1 10.1496 1.7417 -5.3351 20 6 10.6637 -0.1482 -4.4406 21 7 10.3053 -1.0191 -3.5324 22 14 12.3575 -0.2557 -5.2206 23 1 13.3435 0.4484 -4.3620 24 1 12.7497 -1.6814 -5.3580 25 1 12.3260 0.3803 -6.5622 26 6 7.8166 -0.5370 -4.4099 27 6 6.4711 -0.6485 -4.1430 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5029 1.5198 2.0620 34 1 0.4779 2.4976 0.9643 35 1 2.4770 3.7088 2.3205 36 1 2.2291 4.1164 0.5923 37 1 4.3672 2.4054 1.8644 38 1 4.4398 3.3695 0.3594 39 1 5.2205 1.5771 -1.1450 40 1 3.7723 2.4045 -1.7667 41 1 3.4584 -0.4689 -1.5810 42 1 5.6305 2.6274 -4.0468 43 1 8.0262 2.8663 -4.5330 44 1 10.9194 -1.7204 -3.2639 45 1 8.4252 -1.4239 -4.5074 46 1 6.0240 -1.6252 -4.0314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:27 Heat of formation + Delta-G solvation = -63.059725 kcal Electronic energy + Delta-G solvation = -27592.040709 eV Core-core repulsion = 23800.575230 eV Total energy + Delta-G solvation = -3791.465479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.53210 -37.55692 -36.40737 -35.04211 -34.66651 -34.01213 -33.61580 -30.23802 -29.56821 -29.46186 -28.75565 -25.79548 -24.95555 -22.70642 -21.47949 -21.16795 -20.80453 -20.49153 -18.66389 -17.60264 -17.02938 -16.74386 -16.24808 -15.97075 -15.44814 -15.10279 -14.86940 -14.40031 -14.16151 -14.03321 -13.40287 -13.28592 -13.18967 -13.01398 -12.56852 -12.43903 -12.29078 -12.17620 -12.04845 -11.76338 -11.63770 -11.40658 -11.37943 -11.31509 -11.23176 -11.19771 -11.16954 -11.01740 -10.88086 -10.86550 -10.59944 -10.40940 -9.73443 -9.60152 -9.48759 -8.93209 -8.49057 -7.93373 -7.69173 -7.14321 -4.78447 1.34514 2.27299 2.87652 2.89905 2.93358 2.96838 3.67221 3.74952 3.84471 4.25419 4.49540 4.52517 4.60242 4.79359 4.96584 5.02164 5.11319 5.19570 5.31997 5.35178 5.36191 5.41214 5.52763 5.60758 5.68622 5.71241 5.80976 5.85454 5.89624 5.99145 6.02973 6.08196 6.10566 6.14904 6.31709 6.69187 6.72415 6.80628 6.92452 6.97041 7.05980 7.34365 7.38330 7.44821 7.64522 7.78063 7.98261 8.33026 8.52431 8.66138 9.78268 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.002955 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.104412 B = 9472.762705 C =10133.867588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.038 3.962 3 N -0.507 5.507 4 C 0.034 3.966 5 C -0.124 4.124 6 C -0.126 4.126 7 C 0.060 3.940 8 H 0.059 0.941 9 C 0.139 3.861 10 N -1.121 6.121 11 S 2.695 3.305 12 O -0.983 6.983 13 O -0.988 6.988 14 C -0.787 4.787 15 C 0.000 4.000 16 C -0.238 4.238 17 C 0.141 3.859 18 C -0.438 4.438 19 H 0.087 0.913 20 C 0.073 3.927 21 N -0.767 5.767 22 Si 0.915 3.085 23 H -0.267 1.267 24 H -0.271 1.271 25 H -0.256 1.256 26 C -0.183 4.183 27 C -0.014 4.014 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.405 0.595 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.288 0.712 45 H 0.119 0.881 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.769 2.908 11.084 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.091 4.091 3 N -0.231 5.231 4 C -0.093 4.093 5 C -0.162 4.162 6 C -0.165 4.165 7 C -0.050 4.050 8 H 0.077 0.923 9 C 0.012 3.988 10 N -0.879 5.879 11 S 2.793 3.207 12 O -0.973 6.973 13 O -0.979 6.979 14 C -0.882 4.882 15 C -0.020 4.020 16 C -0.259 4.259 17 C 0.137 3.863 18 C -0.465 4.465 19 H 0.105 0.895 20 C -0.149 4.149 21 N -0.389 5.389 22 Si 0.738 3.262 23 H -0.192 1.192 24 H -0.196 1.196 25 H -0.180 1.180 26 C -0.203 4.203 27 C -0.035 4.035 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.239 0.761 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.099 0.901 45 H 0.137 0.863 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.523 3.013 10.051 14.860 hybrid contribution 1.738 -0.923 0.961 2.190 sum -8.784 2.091 11.012 14.241 Atomic orbital electron populations 1.21819 0.94768 1.01792 1.02488 1.22389 0.96270 0.89518 1.00875 1.64724 1.05366 1.12913 1.40146 1.23226 0.99332 0.94886 0.91889 1.22481 0.94339 0.97827 1.01516 1.22409 0.97893 0.96494 0.99723 1.22613 0.88458 0.98277 0.95677 0.92295 1.21258 0.98560 0.87945 0.91078 1.55740 1.82840 1.22032 1.27278 1.01186 0.75086 0.72679 0.71744 1.93479 1.76091 1.48674 1.79031 1.93484 1.83819 1.41177 1.79415 1.29235 1.22893 0.99855 1.36246 1.20184 0.94813 0.93905 0.93087 1.21054 0.93900 0.97426 1.13483 1.17839 0.92807 0.91374 0.84246 1.19916 0.91835 1.03860 1.30933 0.89452 1.26118 1.01790 0.93923 0.93043 1.69828 1.37404 1.11728 1.19974 0.86168 0.80277 0.78883 0.80847 1.19153 1.19612 1.17992 1.21276 0.93152 0.97898 1.07995 1.20248 0.94087 0.94928 0.94206 0.92780 0.91571 0.92223 0.90259 0.94817 0.94024 0.90045 0.91200 0.90470 0.91178 0.90112 0.91292 0.89779 0.76113 0.87759 0.88195 0.90059 0.86293 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.70 37.16 0.36 -1.04 16 2 C 0.04 0.40 5.28 -3.83 -0.02 0.38 16 3 N -0.51 -5.81 4.93 -222.57 -1.10 -6.90 16 4 C 0.03 0.32 5.29 -1.90 -0.01 0.31 16 5 C -0.12 -1.06 7.06 -24.87 -0.18 -1.23 16 6 C -0.13 -1.20 6.57 -25.37 -0.17 -1.37 16 7 C 0.06 0.68 2.69 -66.64 -0.18 0.50 16 8 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 9 C 0.14 1.94 5.68 -4.04 -0.02 1.91 16 10 N -1.12 -17.40 5.48 -10.62 -0.06 -17.46 16 11 S 2.69 53.06 5.73 -107.50 -0.62 52.44 16 12 O -0.98 -21.30 16.70 -57.17 -0.95 -22.26 16 13 O -0.99 -21.57 17.26 -57.17 -0.99 -22.56 16 14 C -0.79 -17.42 5.97 -39.29 -0.23 -17.66 16 15 C 0.00 0.00 9.49 -39.66 -0.38 -0.37 16 16 C -0.24 -5.60 9.80 -38.87 -0.38 -5.98 16 17 C 0.14 3.57 5.56 -106.83 -0.59 2.98 16 18 C -0.44 -10.74 9.04 -37.74 -0.34 -11.08 16 19 H 0.09 2.03 7.91 -52.48 -0.42 1.61 16 20 C 0.07 1.69 5.11 -17.34 -0.09 1.60 16 21 N -0.77 -18.19 11.08 55.55 0.62 -17.57 16 22 Si 0.92 17.02 29.60 -169.99 -5.03 11.99 16 23 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 24 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 25 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 26 C -0.18 -4.59 8.69 -38.87 -0.34 -4.93 16 27 C -0.01 -0.34 9.49 -39.66 -0.38 -0.71 16 28 H 0.05 0.44 6.87 -51.93 -0.36 0.09 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.92 5.61 -51.93 -0.29 0.63 16 32 H 0.03 0.33 7.95 -51.93 -0.41 -0.08 16 33 H 0.04 0.36 8.02 -51.93 -0.42 -0.06 16 34 H 0.08 0.71 7.66 -51.92 -0.40 0.31 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.76 7.69 -51.93 -0.40 0.37 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.24 7.70 -51.93 -0.40 0.84 16 41 H 0.40 5.51 6.29 -34.47 -0.22 5.30 16 42 H 0.10 2.08 7.60 -52.49 -0.40 1.68 16 43 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 44 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 45 H 0.12 3.02 6.28 -52.48 -0.33 2.69 16 46 H 0.10 2.23 7.60 -52.48 -0.40 1.84 16 LS Contribution 377.55 15.07 5.69 5.69 Total: -1.00 -30.05 377.55 -12.31 -42.36 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.92 Total: 10.97 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: -2.94 Total: -36.70 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.54 Total: -41.93 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -1.94 Total: -44.81 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Atomic # 16 Polarization: 53.06 SS G_CDS: -0.62 Total: 52.44 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.05 -12.31 -42.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.702 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds