Wall clock time and date at job start Tue Mar 31 2020 21:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46896 * 109.47436 * 2 1 4 4 C 1.48532 * 111.00142 * 57.10974 * 3 2 1 5 5 C 1.54938 * 103.22899 * 159.72698 * 4 3 2 6 6 C 1.54599 * 102.91940 * 322.58361 * 5 4 3 7 7 C 1.47906 * 111.00268 * 174.50515 * 3 2 1 8 8 H 1.08994 * 110.08347 * 333.60383 * 7 3 2 9 9 C 1.53002 * 109.91314 * 94.80208 * 7 3 2 10 10 N 1.46495 * 109.47314 * 298.24939 * 9 7 3 11 11 S 1.65604 * 120.00159 * 162.32336 * 10 9 7 12 12 O 1.42093 * 106.40316 * 311.46396 * 11 10 9 13 13 O 1.42100 * 106.40186 * 178.53948 * 11 10 9 14 14 C 1.76198 * 107.21466 * 65.00429 * 11 10 9 15 15 C 1.38635 * 119.75140 * 270.29531 * 14 11 10 16 16 C 1.37612 * 120.25181 * 180.30257 * 15 14 11 17 17 C 1.40717 * 119.74396 * 359.42615 * 16 15 14 18 18 C 1.41392 * 120.24632 * 180.29790 * 17 16 15 19 19 H 1.08004 * 119.99986 * 334.27239 * 18 17 16 20 20 C 1.39944 * 120.00569 * 154.27600 * 18 17 16 21 21 N 1.30830 * 119.99255 * 341.57339 * 20 18 17 22 22 Si 1.86792 * 120.00560 * 161.57139 * 20 18 17 23 23 H 1.48500 * 109.47212 * 94.95867 * 22 20 18 24 24 H 1.48498 * 109.47368 * 214.95912 * 22 20 18 25 25 H 1.48504 * 109.47177 * 334.95582 * 22 20 18 26 26 C 1.40713 * 119.51018 * 0.27848 * 17 16 15 27 27 C 1.37617 * 119.74507 * 359.97438 * 26 17 16 28 28 H 1.08993 * 109.47362 * 300.00582 * 1 2 3 29 29 H 1.09000 * 109.46516 * 60.00365 * 1 2 3 30 30 H 1.08997 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47769 * 239.99212 * 2 1 3 32 32 H 1.09005 * 109.46926 * 119.99847 * 2 1 3 33 33 H 1.08994 * 110.67101 * 41.28586 * 4 3 2 34 34 H 1.09007 * 110.81136 * 278.22687 * 4 3 2 35 35 H 1.09004 * 110.72392 * 204.23166 * 5 4 3 36 36 H 1.08993 * 110.87818 * 81.01043 * 5 4 3 37 37 H 1.09004 * 110.31019 * 263.04622 * 6 5 4 38 38 H 1.08997 * 110.39226 * 140.91753 * 6 5 4 39 39 H 1.09005 * 109.46848 * 178.25410 * 9 7 3 40 40 H 1.08993 * 109.47319 * 58.25359 * 9 7 3 41 41 H 0.97001 * 119.99812 * 342.32760 * 10 9 7 42 42 H 1.08000 * 119.87598 * 0.02562 * 15 14 11 43 43 H 1.07998 * 120.13345 * 179.69794 * 16 15 14 44 44 H 0.97005 * 119.99360 * 180.02562 * 21 20 18 45 45 H 1.08010 * 120.12846 * 180.02562 * 26 17 16 46 46 H 1.08004 * 119.87389 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4873 2.1378 1.1644 5 6 2.4739 3.3247 1.3003 6 6 3.8368 2.6828 0.9534 7 6 3.4923 1.4265 0.1322 8 1 3.8468 0.5354 0.6502 9 6 4.1375 1.5157 -1.2522 10 7 3.7907 0.3239 -2.0303 11 16 3.9659 0.3302 -3.6771 12 8 3.3537 1.5255 -4.1412 13 8 3.5852 -0.9631 -4.1261 14 6 5.6875 0.4882 -4.0177 15 6 6.2493 1.7485 -4.1519 16 6 7.5915 1.8837 -4.4241 17 6 8.3965 0.7369 -4.5542 18 6 9.7779 0.8637 -4.8275 19 1 10.1496 1.7417 -5.3351 20 6 10.6637 -0.1482 -4.4406 21 7 10.3053 -1.0191 -3.5324 22 14 12.3575 -0.2557 -5.2206 23 1 13.3435 0.4484 -4.3620 24 1 12.7497 -1.6814 -5.3580 25 1 12.3260 0.3803 -6.5622 26 6 7.8166 -0.5370 -4.4099 27 6 6.4711 -0.6485 -4.1430 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5029 1.5198 2.0620 34 1 0.4779 2.4976 0.9643 35 1 2.4770 3.7088 2.3205 36 1 2.2291 4.1164 0.5923 37 1 4.3672 2.4054 1.8644 38 1 4.4398 3.3695 0.3594 39 1 5.2205 1.5771 -1.1450 40 1 3.7723 2.4045 -1.7667 41 1 3.4584 -0.4689 -1.5810 42 1 5.6305 2.6274 -4.0468 43 1 8.0262 2.8663 -4.5330 44 1 10.9194 -1.7204 -3.2639 45 1 8.4252 -1.4239 -4.5074 46 1 6.0240 -1.6252 -4.0314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:27 Heat of formation + Delta-G solvation = -82.904106 kcal Electronic energy + Delta-G solvation = -27592.901226 eV Core-core repulsion = 23800.575230 eV Total energy + Delta-G solvation = -3792.325995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36697 -39.37739 -38.11150 -36.75467 -35.89303 -35.76036 -34.38573 -32.06022 -31.30037 -30.49760 -29.52846 -27.60726 -25.93602 -23.54768 -23.26922 -22.97355 -21.54148 -21.46432 -20.17689 -19.41322 -18.58951 -18.18741 -17.51327 -17.08497 -16.97075 -16.36100 -15.85849 -15.79142 -15.42743 -15.22396 -15.03470 -14.92872 -14.19252 -14.09844 -13.97620 -13.78838 -13.63037 -13.53266 -13.22333 -13.18664 -13.08356 -12.97235 -12.90371 -12.86634 -12.58035 -12.38598 -12.14702 -12.05383 -12.01045 -11.87463 -11.72505 -11.55163 -11.40116 -11.31276 -11.20952 -10.28597 -9.77541 -9.55192 -9.31472 -8.87911 -6.63942 -0.26714 0.48721 1.05715 1.35870 1.42029 1.52621 2.11599 2.28134 2.54662 2.92876 3.02093 3.52820 3.59130 3.70241 3.79997 3.98836 4.17272 4.25448 4.30453 4.32655 4.35943 4.41340 4.54491 4.60572 4.63519 4.70882 4.85783 4.87036 4.93376 4.96981 4.98861 5.06151 5.08169 5.10142 5.13820 5.24103 5.27761 5.32112 5.38111 5.53105 5.59558 5.75783 5.92884 6.00449 6.15334 6.15773 6.19185 6.49101 6.68571 6.81076 8.08250 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.002955 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.104412 B = 9472.762705 C =10133.867588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.033 3.967 3 N -0.526 5.526 4 C 0.035 3.965 5 C -0.120 4.120 6 C -0.126 4.126 7 C 0.062 3.938 8 H 0.065 0.935 9 C 0.132 3.868 10 N -1.107 6.107 11 S 2.724 3.276 12 O -0.999 6.999 13 O -1.009 7.009 14 C -0.795 4.795 15 C -0.001 4.001 16 C -0.254 4.254 17 C 0.113 3.887 18 C -0.467 4.467 19 H 0.092 0.908 20 C 0.036 3.964 21 N -0.796 5.796 22 Si 0.989 3.011 23 H -0.257 1.257 24 H -0.264 1.264 25 H -0.256 1.256 26 C -0.206 4.206 27 C -0.021 4.021 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.416 0.584 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.298 0.702 45 H 0.107 0.893 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.924 3.318 12.481 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 N -0.252 5.252 4 C -0.092 4.092 5 C -0.158 4.158 6 C -0.165 4.165 7 C -0.048 4.048 8 H 0.083 0.917 9 C 0.006 3.994 10 N -0.868 5.868 11 S 2.820 3.180 12 O -0.989 6.989 13 O -0.999 6.999 14 C -0.888 4.888 15 C -0.020 4.020 16 C -0.275 4.275 17 C 0.110 3.890 18 C -0.494 4.494 19 H 0.110 0.890 20 C -0.184 4.184 21 N -0.419 5.419 22 Si 0.809 3.191 23 H -0.181 1.181 24 H -0.188 1.188 25 H -0.180 1.180 26 C -0.227 4.227 27 C -0.041 4.041 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.253 0.747 42 H 0.144 0.856 43 H 0.131 0.869 44 H 0.109 0.891 45 H 0.125 0.875 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.671 3.423 11.450 16.021 hybrid contribution 1.660 -1.043 0.599 2.050 sum -9.010 2.381 12.049 15.233 Atomic orbital electron populations 1.21795 0.93833 1.02482 1.02400 1.22431 0.97119 0.89299 1.00683 1.64679 1.05283 1.13506 1.41704 1.23274 0.99574 0.94918 0.91449 1.22486 0.93393 0.97348 1.02549 1.22439 0.98607 0.95557 0.99904 1.22579 0.88636 0.99601 0.94014 0.91745 1.21460 0.98897 0.86679 0.92377 1.55354 1.82352 1.23292 1.25816 1.00298 0.73589 0.71684 0.72449 1.93456 1.75876 1.49427 1.80161 1.93449 1.83703 1.42136 1.80637 1.29652 1.24283 0.99453 1.35450 1.20455 0.94681 0.94777 0.92129 1.21286 0.94579 0.97647 1.13943 1.18185 0.93815 0.91950 0.85076 1.20207 0.92130 1.05109 1.31979 0.89019 1.26983 1.05495 0.92977 0.92923 1.69855 1.39124 1.12226 1.20663 0.85069 0.75239 0.79142 0.79684 1.18116 1.18823 1.17998 1.21287 0.93878 0.97702 1.09811 1.20435 0.93809 0.96002 0.93854 0.91529 0.92946 0.91196 0.91685 0.93695 0.92940 0.89643 0.89171 0.91126 0.89738 0.90392 0.91362 0.90588 0.74705 0.85608 0.86902 0.89082 0.87462 0.86950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.70 71.98 0.70 -1.80 16 2 C 0.03 0.65 5.28 86.30 0.46 1.11 16 3 N -0.53 -11.16 4.93 -858.09 -4.23 -15.39 16 4 C 0.04 0.56 5.29 86.65 0.46 1.02 16 5 C -0.12 -1.76 7.06 31.80 0.22 -1.54 16 6 C -0.13 -2.13 6.57 31.47 0.21 -1.93 16 7 C 0.06 1.31 2.69 45.06 0.12 1.43 16 8 H 0.06 1.29 7.66 -2.39 -0.02 1.28 16 9 C 0.13 3.58 5.68 86.38 0.49 4.07 16 10 N -1.11 -33.47 5.48 -187.50 -1.03 -34.49 16 11 S 2.72 106.07 5.73 -56.49 -0.32 105.74 16 12 O -1.00 -42.63 16.70 -128.00 -2.14 -44.77 16 13 O -1.01 -43.64 17.26 -128.00 -2.21 -45.85 16 14 C -0.80 -35.34 5.97 22.46 0.13 -35.20 16 15 C 0.00 -0.03 9.49 22.22 0.21 0.18 16 16 C -0.25 -12.12 9.80 22.73 0.22 -11.90 16 17 C 0.11 5.88 5.56 -21.29 -0.12 5.76 16 18 C -0.47 -23.35 9.04 23.46 0.21 -23.14 16 19 H 0.09 4.33 7.91 -2.91 -0.02 4.30 16 20 C 0.04 1.65 5.11 85.26 0.44 2.09 16 21 N -0.80 -38.25 11.08 21.83 0.24 -38.01 16 22 Si 0.99 34.53 29.60 68.60 2.03 36.56 16 23 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 24 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 25 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 26 C -0.21 -10.70 8.69 22.73 0.20 -10.50 16 27 C -0.02 -1.00 9.49 22.22 0.21 -0.79 16 28 H 0.07 0.94 6.87 -2.39 -0.02 0.93 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.44 5.61 -2.39 -0.01 1.42 16 32 H 0.04 0.78 7.95 -2.38 -0.02 0.76 16 33 H 0.05 0.74 8.02 -2.39 -0.02 0.72 16 34 H 0.09 1.30 7.66 -2.38 -0.02 1.28 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.36 7.69 -2.39 -0.02 1.34 16 39 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.08 2.19 7.70 -2.39 -0.02 2.17 16 41 H 0.42 10.95 6.29 -96.74 -0.61 10.34 16 42 H 0.13 4.94 7.60 -2.91 -0.02 4.92 16 43 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 44 H 0.30 12.71 8.30 -92.70 -0.77 11.94 16 45 H 0.11 5.68 6.28 -2.91 -0.02 5.66 16 46 H 0.11 4.99 7.60 -2.91 -0.02 4.97 16 Total: -1.00 -64.31 377.55 -3.12 -67.43 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: 0.38 Total: 39.93 kcal Atomic # 6 Polarization: -75.30 SS G_CDS: 4.16 Total: -71.14 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -5.02 Total: -87.89 kcal Atomic # 8 Polarization: -86.28 SS G_CDS: -4.35 Total: -90.63 kcal Atomic # 14 Polarization: 34.53 SS G_CDS: 2.03 Total: 36.56 kcal Atomic # 16 Polarization: 106.07 SS G_CDS: -0.32 Total: 105.74 kcal Total: -64.31 -3.12 -67.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.476 kcal (2) G-P(sol) polarization free energy of solvation -64.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds