Wall clock time and date at job start Tue Mar 31 2020 21:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.47268 * 2 1 4 4 C 1.48560 * 110.99822 * 281.55878 * 3 2 1 5 5 C 1.54378 * 104.59346 * 200.96147 * 4 3 2 6 6 C 1.54258 * 105.06132 * 23.84966 * 5 4 3 7 7 C 1.48558 * 110.99776 * 166.14062 * 3 2 1 8 8 H 1.08993 * 110.51524 * 40.21289 * 7 3 2 9 9 C 1.53006 * 110.41179 * 277.81533 * 7 3 2 10 10 N 1.46490 * 109.47074 * 181.67446 * 9 7 3 11 11 S 1.65603 * 119.99896 * 164.58545 * 10 9 7 12 12 O 1.42103 * 106.39995 * 311.45568 * 11 10 9 13 13 O 1.42100 * 106.40298 * 178.54285 * 11 10 9 14 14 C 1.76195 * 107.21841 * 64.99868 * 11 10 9 15 15 C 1.38629 * 119.75030 * 90.00499 * 14 11 10 16 16 C 1.37614 * 120.25288 * 179.97438 * 15 14 11 17 17 C 1.40722 * 119.74420 * 359.97438 * 16 15 14 18 18 C 1.41396 * 120.24755 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99764 * 24.24056 * 18 17 16 20 20 C 1.39942 * 119.99909 * 204.25130 * 18 17 16 21 21 N 1.30826 * 120.00363 * 17.07040 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 197.07921 * 20 18 17 23 23 H 1.48500 * 109.46766 * 265.01491 * 22 20 18 24 24 H 1.48494 * 109.47173 * 145.01286 * 22 20 18 25 25 H 1.48498 * 109.47001 * 25.00826 * 22 20 18 26 26 C 1.40719 * 119.50794 * 0.27584 * 17 16 15 27 27 C 1.37624 * 119.74352 * 359.44398 * 26 17 16 28 28 H 1.08997 * 109.46647 * 59.99725 * 1 2 3 29 29 H 1.08996 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46984 * 300.00395 * 1 2 3 31 31 H 1.09001 * 109.46984 * 239.99605 * 2 1 3 32 32 H 1.08999 * 109.46727 * 119.99736 * 2 1 3 33 33 H 1.09001 * 110.41382 * 82.18009 * 4 3 2 34 34 H 1.09000 * 110.51281 * 319.78753 * 4 3 2 35 35 H 1.09004 * 110.32331 * 264.95847 * 5 4 3 36 36 H 1.09000 * 110.32339 * 142.75192 * 5 4 3 37 37 H 1.09002 * 110.32933 * 241.10613 * 6 5 4 38 38 H 1.09000 * 110.32119 * 118.89477 * 6 5 4 39 39 H 1.09007 * 109.46643 * 61.67326 * 9 7 3 40 40 H 1.08997 * 109.47137 * 301.68060 * 9 7 3 41 41 H 0.96999 * 120.00254 * 344.58348 * 10 9 7 42 42 H 1.08006 * 119.87570 * 359.95081 * 15 14 11 43 43 H 1.08000 * 120.13618 * 180.02562 * 16 15 14 44 44 H 0.96991 * 120.00121 * 180.02562 * 21 20 18 45 45 H 1.08000 * 120.12861 * 179.73198 * 26 17 16 46 46 H 1.08000 * 119.87522 * 180.27716 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9352 1.9795 -1.3588 5 6 2.9354 3.1552 -1.3319 6 6 3.9428 2.7990 -0.2194 7 6 3.4667 1.4380 0.3322 8 1 4.0007 0.6224 -0.1553 9 6 3.6689 1.3762 1.8476 10 7 5.0984 1.4701 2.1537 11 16 5.5941 1.8122 3.6963 12 8 4.8338 2.9346 4.1224 13 8 7.0149 1.7995 3.6734 14 6 5.1008 0.4614 4.7144 15 6 5.9585 -0.6125 4.8956 16 6 5.5839 -1.6727 5.6890 17 6 4.3250 -1.6637 6.3178 18 6 3.9295 -2.7472 7.1356 19 1 4.6764 -3.3739 7.6000 20 6 2.5703 -3.0075 7.3431 21 7 1.6750 -2.4870 6.5437 22 14 2.0341 -4.0980 8.7619 23 1 1.8639 -5.4916 8.2780 24 1 0.7450 -3.6024 9.3074 25 1 3.0674 -4.0670 9.8279 26 6 3.4605 -0.5707 6.1223 27 6 3.8585 0.4813 5.3293 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.9261 2.3432 -1.5526 34 1 2.2269 1.2496 -2.1139 35 1 2.4199 4.0853 -1.0922 36 1 3.4453 3.2405 -2.2915 37 1 3.9220 3.5542 0.5664 38 1 4.9474 2.7094 -0.6329 39 1 3.2769 0.4330 2.2283 40 1 3.1412 2.2055 2.3187 41 1 5.7546 1.3318 1.4529 42 1 6.9242 -0.6173 4.4121 43 1 6.2537 -2.5082 5.8292 44 1 0.7329 -2.6671 6.6878 45 1 2.4903 -0.5553 6.5966 46 1 3.1984 1.3233 5.1815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:31 Heat of formation + Delta-G solvation = -66.992969 kcal Electronic energy + Delta-G solvation = -27559.937423 eV Core-core repulsion = 23768.301386 eV Total energy + Delta-G solvation = -3791.636037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.42029 -37.56404 -36.46644 -35.11424 -34.92568 -34.03613 -33.33460 -30.24709 -29.60098 -29.44766 -28.71460 -25.81538 -24.77252 -22.83244 -21.50626 -21.12980 -20.77617 -20.36173 -18.81020 -17.61451 -17.11320 -16.68722 -16.11180 -15.84818 -15.52305 -15.16625 -14.71926 -14.38572 -14.13309 -14.06569 -13.69304 -13.34659 -13.20748 -12.97306 -12.60149 -12.40456 -12.33989 -12.15470 -11.83474 -11.75549 -11.55815 -11.44284 -11.39736 -11.33531 -11.27670 -11.19560 -11.13154 -10.98038 -10.88337 -10.84048 -10.56031 -10.41468 -9.75650 -9.62239 -9.49580 -8.98285 -8.62228 -7.95204 -7.69008 -7.13427 -4.79907 1.28315 2.26190 2.87392 2.89511 2.93650 2.96137 3.59319 3.66474 3.99559 4.26248 4.46217 4.51355 4.60604 4.83678 4.99633 5.07093 5.17464 5.22169 5.30417 5.36793 5.40045 5.48602 5.51380 5.62061 5.73568 5.77841 5.86243 5.88105 5.99952 6.01714 6.07567 6.12182 6.13997 6.22992 6.25201 6.68591 6.71556 6.77346 6.93045 6.95261 7.05937 7.32189 7.36187 7.43815 7.65436 7.78124 7.97608 8.32879 8.52102 8.66051 9.77208 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011163 B = 0.003637 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.735496 B = 7696.754217 C = 9671.310759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.035 3.965 3 N -0.503 5.503 4 C 0.034 3.966 5 C -0.125 4.125 6 C -0.122 4.122 7 C 0.058 3.942 8 H 0.058 0.942 9 C 0.136 3.864 10 N -1.126 6.126 11 S 2.696 3.304 12 O -0.983 6.983 13 O -0.987 6.987 14 C -0.787 4.787 15 C 0.002 3.998 16 C -0.240 4.240 17 C 0.139 3.861 18 C -0.435 4.435 19 H 0.087 0.913 20 C 0.072 3.928 21 N -0.766 5.766 22 Si 0.916 3.084 23 H -0.266 1.266 24 H -0.271 1.271 25 H -0.257 1.257 26 C -0.182 4.182 27 C -0.016 4.016 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.407 0.593 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.289 0.711 45 H 0.124 0.876 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 3.629 -13.161 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.093 4.093 3 N -0.228 5.228 4 C -0.094 4.094 5 C -0.163 4.163 6 C -0.160 4.160 7 C -0.052 4.052 8 H 0.076 0.924 9 C 0.010 3.990 10 N -0.882 5.882 11 S 2.794 3.206 12 O -0.973 6.973 13 O -0.978 6.978 14 C -0.883 4.883 15 C -0.018 4.018 16 C -0.260 4.260 17 C 0.135 3.865 18 C -0.462 4.462 19 H 0.105 0.895 20 C -0.150 4.150 21 N -0.388 5.388 22 Si 0.739 3.261 23 H -0.191 1.191 24 H -0.196 1.196 25 H -0.180 1.180 26 C -0.203 4.203 27 C -0.037 4.037 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.240 0.760 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.100 0.900 45 H 0.142 0.858 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.829 4.747 -12.465 13.635 hybrid contribution 0.049 -1.911 -0.249 1.928 sum -2.780 2.836 -12.714 13.320 Atomic orbital electron populations 1.21699 0.94566 1.01469 1.02358 1.22331 0.96692 0.88906 1.01356 1.65238 1.15342 1.18231 1.24029 1.23122 1.00212 0.96234 0.89795 1.22306 0.96729 0.98654 0.98621 1.22373 0.98409 0.96780 0.98427 1.22787 0.89006 0.97658 0.95735 0.92426 1.21018 0.80474 1.02919 0.94628 1.55681 1.13318 1.90671 1.28527 1.01156 0.72551 0.74686 0.72186 1.93486 1.72760 1.49978 1.81067 1.93488 1.29547 1.88196 1.86575 1.29160 1.07824 1.21707 1.29597 1.20156 0.95425 0.91573 0.94684 1.21046 0.99588 0.99577 1.05819 1.17857 0.90553 0.91181 0.86873 1.19943 0.92270 1.10559 1.23451 0.89503 1.26125 0.96549 0.95935 0.96355 1.69809 1.03425 1.34200 1.31401 0.86151 0.79160 0.79817 0.80961 1.19146 1.19556 1.18014 1.21373 1.01475 0.93509 1.03926 1.20280 0.92456 0.96594 0.94322 0.93150 0.92371 0.91578 0.94647 0.90098 0.90116 0.93978 0.90912 0.91544 0.90176 0.91290 0.91438 0.89592 0.76028 0.87853 0.88263 0.90021 0.85810 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 10.07 37.16 0.37 -1.08 16 2 C 0.04 0.39 5.53 -3.82 -0.02 0.37 16 3 N -0.50 -5.83 4.99 -222.14 -1.11 -6.94 16 4 C 0.03 0.33 6.05 -2.18 -0.01 0.31 16 5 C -0.12 -1.12 7.00 -25.35 -0.18 -1.30 16 6 C -0.12 -1.28 6.26 -25.35 -0.16 -1.44 16 7 C 0.06 0.68 2.36 -66.07 -0.16 0.53 16 8 H 0.06 0.65 8.00 -51.93 -0.42 0.23 16 9 C 0.14 1.96 5.75 -4.04 -0.02 1.94 16 10 N -1.13 -16.70 5.71 -10.61 -0.06 -16.76 16 11 S 2.70 51.69 5.73 -107.50 -0.62 51.08 16 12 O -0.98 -21.03 16.72 -57.17 -0.96 -21.99 16 13 O -0.99 -20.75 17.26 -57.17 -0.99 -21.73 16 14 C -0.79 -17.27 5.97 -39.29 -0.23 -17.50 16 15 C 0.00 0.04 9.49 -39.67 -0.38 -0.34 16 16 C -0.24 -5.66 9.80 -38.87 -0.38 -6.04 16 17 C 0.14 3.51 5.58 -106.82 -0.60 2.91 16 18 C -0.43 -10.63 9.06 -37.74 -0.34 -10.97 16 19 H 0.09 2.01 7.90 -52.49 -0.41 1.60 16 20 C 0.07 1.65 5.16 -17.34 -0.09 1.56 16 21 N -0.77 -17.96 10.88 55.55 0.60 -17.36 16 22 Si 0.92 16.93 29.59 -169.99 -5.03 11.90 16 23 H -0.27 -4.85 7.11 56.52 0.40 -4.44 16 24 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 25 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 26 C -0.18 -4.54 8.70 -38.87 -0.34 -4.88 16 27 C -0.02 -0.37 9.49 -39.66 -0.38 -0.75 16 28 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.36 7.68 -51.93 -0.40 -0.04 16 32 H 0.08 1.00 7.12 -51.93 -0.37 0.63 16 33 H 0.08 0.71 7.95 -51.93 -0.41 0.30 16 34 H 0.04 0.37 7.70 -51.93 -0.40 -0.03 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.94 7.84 -51.93 -0.41 0.53 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.04 7.30 -51.93 -0.38 0.66 16 40 H 0.09 1.33 7.72 -51.93 -0.40 0.93 16 41 H 0.41 5.00 8.64 -34.47 -0.30 4.70 16 42 H 0.10 2.09 7.60 -52.48 -0.40 1.69 16 43 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 44 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 45 H 0.12 3.12 6.09 -52.49 -0.32 2.80 16 46 H 0.10 2.23 7.60 -52.49 -0.40 1.83 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -29.32 382.37 -12.39 -41.70 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -7.08 Total: 11.00 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: -2.91 Total: -36.67 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.57 Total: -41.06 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.94 Total: -43.72 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Atomic # 16 Polarization: 51.69 SS G_CDS: -0.62 Total: 51.08 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.32 -12.39 -41.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.289 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds