Wall clock time and date at job start Tue Mar 31 2020 21:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.47268 * 2 1 4 4 C 1.48560 * 110.99822 * 281.55878 * 3 2 1 5 5 C 1.54378 * 104.59346 * 200.96147 * 4 3 2 6 6 C 1.54258 * 105.06132 * 23.84966 * 5 4 3 7 7 C 1.48558 * 110.99776 * 166.14062 * 3 2 1 8 8 H 1.08993 * 110.51524 * 40.21289 * 7 3 2 9 9 C 1.53006 * 110.41179 * 277.81533 * 7 3 2 10 10 N 1.46490 * 109.47074 * 181.67446 * 9 7 3 11 11 S 1.65603 * 119.99896 * 164.58545 * 10 9 7 12 12 O 1.42103 * 106.39995 * 311.45568 * 11 10 9 13 13 O 1.42100 * 106.40298 * 178.54285 * 11 10 9 14 14 C 1.76195 * 107.21841 * 64.99868 * 11 10 9 15 15 C 1.38629 * 119.75030 * 90.00499 * 14 11 10 16 16 C 1.37614 * 120.25288 * 179.97438 * 15 14 11 17 17 C 1.40722 * 119.74420 * 359.97438 * 16 15 14 18 18 C 1.41396 * 120.24755 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99764 * 24.24056 * 18 17 16 20 20 C 1.39942 * 119.99909 * 204.25130 * 18 17 16 21 21 N 1.30826 * 120.00363 * 17.07040 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 197.07921 * 20 18 17 23 23 H 1.48500 * 109.46766 * 265.01491 * 22 20 18 24 24 H 1.48494 * 109.47173 * 145.01286 * 22 20 18 25 25 H 1.48498 * 109.47001 * 25.00826 * 22 20 18 26 26 C 1.40719 * 119.50794 * 0.27584 * 17 16 15 27 27 C 1.37624 * 119.74352 * 359.44398 * 26 17 16 28 28 H 1.08997 * 109.46647 * 59.99725 * 1 2 3 29 29 H 1.08996 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46984 * 300.00395 * 1 2 3 31 31 H 1.09001 * 109.46984 * 239.99605 * 2 1 3 32 32 H 1.08999 * 109.46727 * 119.99736 * 2 1 3 33 33 H 1.09001 * 110.41382 * 82.18009 * 4 3 2 34 34 H 1.09000 * 110.51281 * 319.78753 * 4 3 2 35 35 H 1.09004 * 110.32331 * 264.95847 * 5 4 3 36 36 H 1.09000 * 110.32339 * 142.75192 * 5 4 3 37 37 H 1.09002 * 110.32933 * 241.10613 * 6 5 4 38 38 H 1.09000 * 110.32119 * 118.89477 * 6 5 4 39 39 H 1.09007 * 109.46643 * 61.67326 * 9 7 3 40 40 H 1.08997 * 109.47137 * 301.68060 * 9 7 3 41 41 H 0.96999 * 120.00254 * 344.58348 * 10 9 7 42 42 H 1.08006 * 119.87570 * 359.95081 * 15 14 11 43 43 H 1.08000 * 120.13618 * 180.02562 * 16 15 14 44 44 H 0.96991 * 120.00121 * 180.02562 * 21 20 18 45 45 H 1.08000 * 120.12861 * 179.73198 * 26 17 16 46 46 H 1.08000 * 119.87522 * 180.27716 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9352 1.9795 -1.3588 5 6 2.9354 3.1552 -1.3319 6 6 3.9428 2.7990 -0.2194 7 6 3.4667 1.4380 0.3322 8 1 4.0007 0.6224 -0.1553 9 6 3.6689 1.3762 1.8476 10 7 5.0984 1.4701 2.1537 11 16 5.5941 1.8122 3.6963 12 8 4.8338 2.9346 4.1224 13 8 7.0149 1.7995 3.6734 14 6 5.1008 0.4614 4.7144 15 6 5.9585 -0.6125 4.8956 16 6 5.5839 -1.6727 5.6890 17 6 4.3250 -1.6637 6.3178 18 6 3.9295 -2.7472 7.1356 19 1 4.6764 -3.3739 7.6000 20 6 2.5703 -3.0075 7.3431 21 7 1.6750 -2.4870 6.5437 22 14 2.0341 -4.0980 8.7619 23 1 1.8639 -5.4916 8.2780 24 1 0.7450 -3.6024 9.3074 25 1 3.0674 -4.0670 9.8279 26 6 3.4605 -0.5707 6.1223 27 6 3.8585 0.4813 5.3293 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.9261 2.3432 -1.5526 34 1 2.2269 1.2496 -2.1139 35 1 2.4199 4.0853 -1.0922 36 1 3.4453 3.2405 -2.2915 37 1 3.9220 3.5542 0.5664 38 1 4.9474 2.7094 -0.6329 39 1 3.2769 0.4330 2.2283 40 1 3.1412 2.2055 2.3187 41 1 5.7546 1.3318 1.4529 42 1 6.9242 -0.6173 4.4121 43 1 6.2537 -2.5082 5.8292 44 1 0.7329 -2.6671 6.6878 45 1 2.4903 -0.5553 6.5966 46 1 3.1984 1.3233 5.1815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:30 Heat of formation + Delta-G solvation = -86.376577 kcal Electronic energy + Delta-G solvation = -27560.777960 eV Core-core repulsion = 23768.301386 eV Total energy + Delta-G solvation = -3792.476573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.29915 -39.37830 -38.13499 -36.78595 -36.14535 -35.79886 -34.17386 -32.06272 -31.28412 -30.55697 -29.56880 -27.62117 -25.82683 -23.68564 -23.28670 -22.95193 -21.61272 -21.30800 -20.31482 -19.42312 -18.65091 -18.22384 -17.26562 -17.20966 -16.89701 -16.34657 -15.84721 -15.79769 -15.43877 -15.29041 -15.04344 -14.93964 -14.58621 -14.10475 -13.96112 -13.76809 -13.61682 -13.50294 -13.42535 -13.10378 -13.00056 -12.93972 -12.89546 -12.85944 -12.59859 -12.38058 -12.18716 -12.12510 -12.01361 -11.95795 -11.68936 -11.55195 -11.34878 -11.32221 -11.22066 -10.35255 -9.78677 -9.54630 -9.47187 -8.86265 -6.64949 -0.30275 0.48640 1.06224 1.35791 1.42111 1.52418 2.11368 2.21262 2.51707 2.93467 3.03340 3.53280 3.56955 3.66669 3.71720 3.99596 4.17827 4.23272 4.28888 4.31551 4.32824 4.43925 4.49369 4.57872 4.64185 4.73569 4.79609 4.87100 4.93657 4.96204 4.99253 5.01295 5.08550 5.11659 5.13044 5.24019 5.24620 5.32513 5.39013 5.52542 5.59756 5.77245 5.92376 5.93724 6.09960 6.15122 6.20308 6.49462 6.68562 6.81366 8.07995 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011163 B = 0.003637 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.735496 B = 7696.754217 C = 9671.310759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.035 3.965 3 N -0.520 5.520 4 C 0.034 3.966 5 C -0.120 4.120 6 C -0.124 4.124 7 C 0.061 3.939 8 H 0.068 0.932 9 C 0.136 3.864 10 N -1.106 6.106 11 S 2.729 3.271 12 O -1.002 7.002 13 O -1.000 7.000 14 C -0.797 4.797 15 C -0.002 4.002 16 C -0.258 4.258 17 C 0.111 3.889 18 C -0.465 4.465 19 H 0.091 0.909 20 C 0.035 3.965 21 N -0.794 5.794 22 Si 0.990 3.010 23 H -0.257 1.257 24 H -0.263 1.263 25 H -0.257 1.257 26 C -0.206 4.206 27 C -0.020 4.020 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.424 0.576 42 H 0.126 0.874 43 H 0.111 0.889 44 H 0.298 0.702 45 H 0.112 0.888 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.480 3.530 -14.710 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.093 4.093 3 N -0.246 5.246 4 C -0.093 4.093 5 C -0.158 4.158 6 C -0.162 4.162 7 C -0.049 4.049 8 H 0.086 0.914 9 C 0.009 3.991 10 N -0.867 5.867 11 S 2.824 3.176 12 O -0.992 6.992 13 O -0.990 6.990 14 C -0.890 4.890 15 C -0.022 4.022 16 C -0.278 4.278 17 C 0.108 3.892 18 C -0.492 4.492 19 H 0.109 0.891 20 C -0.184 4.184 21 N -0.417 5.417 22 Si 0.809 3.191 23 H -0.182 1.182 24 H -0.187 1.187 25 H -0.180 1.180 26 C -0.227 4.227 27 C -0.040 4.040 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.260 0.740 42 H 0.144 0.856 43 H 0.129 0.871 44 H 0.110 0.890 45 H 0.130 0.870 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.773 4.631 -14.015 15.019 hybrid contribution 0.038 -1.802 0.124 1.807 sum -2.735 2.829 -13.891 14.438 Atomic orbital electron populations 1.21663 0.93933 1.01887 1.02203 1.22318 0.97239 0.88861 1.00919 1.65214 1.15081 1.18480 1.25791 1.23190 1.00894 0.96510 0.88704 1.22309 0.96234 0.98332 0.98960 1.22408 0.99855 0.95350 0.98613 1.22727 0.89676 0.98987 0.93484 0.91394 1.21052 0.79491 1.01624 0.96940 1.55178 1.14144 1.90161 1.27221 1.00190 0.71671 0.73336 0.72406 1.93462 1.73233 1.50521 1.82033 1.93464 1.30419 1.88091 1.87064 1.29638 1.07045 1.22373 1.29965 1.20456 0.96327 0.91204 0.94192 1.21278 0.99565 1.00690 1.06274 1.18200 0.91459 0.91788 0.87788 1.20233 0.93565 1.10997 1.24428 0.89115 1.26985 0.95915 0.97077 0.98462 1.69839 1.04164 1.35020 1.32663 0.85060 0.78716 0.78039 0.77272 1.18168 1.18714 1.18010 1.21379 1.01457 0.94539 1.05300 1.20440 0.93240 0.96399 0.93915 0.91835 0.91709 0.93120 0.93421 0.92133 0.89461 0.92902 0.90928 0.89496 0.91686 0.89588 0.92842 0.90873 0.74033 0.85585 0.87082 0.89049 0.87002 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 10.07 71.98 0.72 -1.99 16 2 C 0.03 0.75 5.53 86.30 0.48 1.22 16 3 N -0.52 -11.41 4.99 -856.70 -4.28 -15.69 16 4 C 0.03 0.57 6.05 86.45 0.52 1.09 16 5 C -0.12 -1.83 7.00 31.49 0.22 -1.61 16 6 C -0.12 -2.34 6.26 31.49 0.20 -2.14 16 7 C 0.06 1.35 2.36 45.07 0.11 1.46 16 8 H 0.07 1.37 8.00 -2.39 -0.02 1.35 16 9 C 0.14 3.86 5.75 86.38 0.50 4.36 16 10 N -1.11 -31.51 5.71 -187.50 -1.07 -32.58 16 11 S 2.73 102.54 5.73 -56.49 -0.32 102.22 16 12 O -1.00 -42.47 16.72 -128.00 -2.14 -44.61 16 13 O -1.00 -40.50 17.26 -128.00 -2.21 -42.71 16 14 C -0.80 -35.15 5.97 22.46 0.13 -35.01 16 15 C 0.00 -0.09 9.49 22.22 0.21 0.12 16 16 C -0.26 -12.39 9.80 22.73 0.22 -12.17 16 17 C 0.11 5.79 5.58 -21.29 -0.12 5.68 16 18 C -0.47 -23.33 9.06 23.46 0.21 -23.12 16 19 H 0.09 4.30 7.90 -2.91 -0.02 4.28 16 20 C 0.04 1.62 5.16 85.26 0.44 2.06 16 21 N -0.79 -38.06 10.88 21.83 0.24 -37.82 16 22 Si 0.99 34.54 29.59 68.60 2.03 36.57 16 23 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 24 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 25 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 26 C -0.21 -10.69 8.70 22.73 0.20 -10.49 16 27 C -0.02 -0.95 9.49 22.22 0.21 -0.73 16 28 H 0.06 1.06 7.67 -2.39 -0.02 1.04 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 0.90 7.68 -2.39 -0.02 0.88 16 32 H 0.06 1.53 7.12 -2.39 -0.02 1.51 16 33 H 0.09 1.33 7.95 -2.39 -0.02 1.31 16 34 H 0.05 0.77 7.70 -2.39 -0.02 0.76 16 35 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 1.43 7.84 -2.39 -0.02 1.41 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.68 7.30 -2.38 -0.02 1.66 16 40 H 0.07 2.28 7.72 -2.39 -0.02 2.26 16 41 H 0.42 9.49 8.64 -96.75 -0.84 8.65 16 42 H 0.13 4.94 7.60 -2.91 -0.02 4.92 16 43 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 44 H 0.30 12.69 8.30 -92.71 -0.77 11.92 16 45 H 0.11 5.93 6.09 -2.91 -0.02 5.91 16 46 H 0.11 4.98 7.60 -2.91 -0.02 4.95 16 Total: -1.00 -63.30 382.37 -3.35 -66.65 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: 0.15 Total: 39.25 kcal Atomic # 6 Polarization: -75.53 SS G_CDS: 4.26 Total: -71.27 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -5.11 Total: -86.09 kcal Atomic # 8 Polarization: -82.97 SS G_CDS: -4.35 Total: -87.32 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 2.03 Total: 36.57 kcal Atomic # 16 Polarization: 102.54 SS G_CDS: -0.32 Total: 102.22 kcal Total: -63.30 -3.35 -66.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.722 kcal (2) G-P(sol) polarization free energy of solvation -63.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds