Wall clock time and date at job start Tue Mar 31 2020 20:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47192 * 2 1 4 4 C 1.50693 * 109.47181 * 120.00461 * 2 1 3 5 5 H 1.08005 * 120.00160 * 119.99982 * 4 2 1 6 6 C 1.37873 * 120.00419 * 299.99618 * 4 2 1 7 7 N 1.31518 * 120.00587 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99665 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47323 * 89.99721 * 8 6 4 10 10 H 1.48499 * 109.47084 * 209.99517 * 8 6 4 11 11 H 1.48493 * 109.47317 * 329.99650 * 8 6 4 12 12 S 1.81399 * 109.46867 * 240.00527 * 2 1 3 13 13 C 1.76203 * 103.00011 * 169.87226 * 12 2 1 14 14 C 1.38783 * 120.10415 * 4.84590 * 13 12 2 15 15 C 1.38197 * 119.99250 * 179.97438 * 14 13 12 16 16 C 1.38305 * 120.19400 * 0.02692 * 15 14 13 17 17 C 1.38250 * 120.21255 * 359.67778 * 16 15 14 18 18 C 1.38650 * 120.00442 * 0.59949 * 17 16 15 19 19 N 1.40148 * 120.09656 * 179.70269 * 18 17 16 20 20 C 1.34771 * 119.99886 * 335.18978 * 19 18 17 21 21 O 1.21301 * 120.00195 * 354.43737 * 20 19 18 22 22 C 1.50696 * 120.00072 * 174.15386 * 20 19 18 23 23 N 1.46898 * 109.47337 * 180.27778 * 22 20 19 24 24 C 1.46900 * 110.99975 * 293.95233 * 23 22 20 25 25 C 1.46906 * 111.00301 * 170.00155 * 23 22 20 26 26 C 1.52989 * 109.47488 * 190.00230 * 25 23 22 27 27 O 1.42903 * 109.47386 * 64.99575 * 26 25 23 28 28 H 1.09000 * 109.46764 * 305.04202 * 1 2 3 29 29 H 1.09000 * 109.47145 * 65.03982 * 1 2 3 30 30 H 1.09002 * 109.46722 * 185.04386 * 1 2 3 31 31 H 0.96999 * 120.00245 * 180.02562 * 7 6 4 32 32 H 1.08006 * 120.00473 * 0.02562 * 14 13 12 33 33 H 1.08000 * 119.90293 * 180.02562 * 15 14 13 34 34 H 1.08005 * 119.88835 * 179.97438 * 16 15 14 35 35 H 1.07998 * 119.99657 * 180.31934 * 17 16 15 36 36 H 0.97003 * 119.99804 * 155.19583 * 19 18 17 37 37 H 1.09008 * 109.47468 * 300.28023 * 22 20 19 38 38 H 1.08998 * 109.47210 * 60.27675 * 22 20 19 39 39 H 1.09003 * 109.46900 * 60.00521 * 24 23 22 40 40 H 1.09003 * 109.47127 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47268 * 300.00110 * 24 23 22 42 42 H 1.09006 * 109.46908 * 310.00430 * 25 23 22 43 43 H 1.09003 * 109.46969 * 69.99623 * 25 23 22 44 44 H 1.09004 * 109.47414 * 185.00151 * 26 25 23 45 45 H 1.09002 * 109.46988 * 305.00070 * 26 25 23 46 46 H 0.96694 * 113.99768 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2396 2.4826 7 7 2.1374 -0.8599 3.5565 8 14 0.6249 1.2789 2.6542 9 1 -0.8027 0.8725 2.6999 10 1 0.9761 1.9948 3.9070 11 1 0.8472 2.1764 1.4923 12 16 2.1346 -0.8550 -1.4812 13 6 3.8602 -0.4988 -1.4679 14 6 4.4200 0.1930 -0.4030 15 6 5.7737 0.4707 -0.3947 16 6 6.5742 0.0617 -1.4458 17 6 6.0263 -0.6333 -2.5079 18 6 4.6681 -0.9115 -2.5278 19 7 4.1096 -1.6104 -3.6065 20 6 4.7125 -1.5835 -4.8116 21 8 5.6807 -0.8748 -4.9897 22 6 4.1877 -2.4386 -5.9360 23 7 5.0150 -2.2357 -7.1328 24 6 4.8766 -0.8649 -7.6423 25 6 4.6865 -3.2196 -8.1730 26 6 5.7240 -3.1418 -9.2946 27 8 7.0013 -3.5370 -8.7903 28 1 -0.3633 0.5901 0.8414 29 1 -0.3633 0.4337 -0.9317 30 1 -0.3633 -1.0237 0.0904 31 1 1.9028 -0.5288 4.4375 32 1 3.7979 0.5136 0.4196 33 1 6.2079 1.0088 0.4350 34 1 7.6315 0.2817 -1.4344 35 1 6.6555 -0.9556 -3.3244 36 1 3.2891 -2.1135 -3.4858 37 1 4.2245 -3.4877 -5.6424 38 1 3.1573 -2.1586 -6.1549 39 1 5.1929 -0.1583 -6.8749 40 1 5.4999 -0.7418 -8.5280 41 1 3.8347 -0.6772 -7.9018 42 1 4.6925 -4.2205 -7.7413 43 1 3.6974 -3.0043 -8.5773 44 1 5.4320 -3.8078 -10.1066 45 1 5.7810 -2.1188 -9.6665 46 1 7.7091 -3.5114 -9.4486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108359366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:12 Heat of formation + Delta-G solvation = -35.258974 kcal Electronic energy + Delta-G solvation = -26791.707605 eV Core-core repulsion = 23001.447658 eV Total energy + Delta-G solvation = -3790.259948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.43035 -38.54660 -37.61106 -35.98016 -34.65996 -34.15578 -31.30316 -30.54324 -30.43269 -29.23960 -27.82677 -25.40667 -25.04587 -22.77964 -22.36892 -21.46827 -20.98424 -20.05523 -17.79452 -17.66367 -17.07743 -16.90970 -16.52181 -16.11151 -15.79575 -15.38508 -15.02581 -14.66727 -14.41869 -14.10203 -13.89113 -13.75273 -13.54188 -13.29816 -12.96452 -12.80700 -12.79599 -12.49067 -12.34725 -12.06487 -11.99204 -11.73869 -11.44435 -11.28563 -11.27058 -10.97224 -10.64983 -10.52284 -10.23452 -10.18265 -9.84531 -9.57190 -9.48639 -9.14064 -8.98179 -8.77122 -8.52337 -7.80803 -6.57939 -6.26929 -4.31389 1.64418 1.91321 2.37615 2.74290 2.98223 3.11583 3.20854 3.25210 3.35420 3.75127 3.99215 4.19973 4.29197 4.61504 4.70125 4.83274 4.94334 5.01129 5.03797 5.09183 5.24003 5.31562 5.39092 5.47985 5.50015 5.55350 5.76807 5.89943 6.00226 6.02652 6.07450 6.16340 6.17617 6.43771 6.54698 6.60805 6.69361 6.77583 6.81538 6.92423 6.96577 7.10217 7.30549 7.41690 7.49612 7.57761 8.20041 8.22815 8.76841 9.28000 10.83280 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021376 B = 0.002607 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.574117 B =10737.742114 C =11498.734940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.054 3.946 3 H 0.051 0.949 4 C -0.523 4.523 5 H 0.088 0.912 6 C 0.081 3.919 7 N -0.884 5.884 8 Si 0.879 3.121 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.265 1.265 12 S -0.166 6.166 13 C -0.088 4.088 14 C -0.095 4.095 15 C -0.125 4.125 16 C -0.118 4.118 17 C -0.124 4.124 18 C 0.151 3.849 19 N -0.662 5.662 20 C 0.513 3.487 21 O -0.504 6.504 22 C 0.037 3.963 23 N -0.514 5.514 24 C 0.014 3.986 25 C 0.053 3.947 26 C 0.081 3.919 27 O -0.557 6.557 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.268 0.732 32 H 0.156 0.844 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.143 0.857 36 H 0.411 0.589 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.020 0.980 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.047 0.953 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 -2.211 -22.044 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 H 0.068 0.932 4 C -0.562 4.562 5 H 0.106 0.894 6 C -0.124 4.124 7 N -0.520 5.520 8 Si 0.709 3.291 9 H -0.202 1.202 10 H -0.219 1.219 11 H -0.190 1.190 12 S 0.080 5.920 13 C -0.203 4.203 14 C -0.118 4.118 15 C -0.145 4.145 16 C -0.139 4.139 17 C -0.146 4.146 18 C 0.050 3.950 19 N -0.307 5.307 20 C 0.300 3.700 21 O -0.378 6.378 22 C -0.094 4.094 23 N -0.238 5.238 24 C -0.134 4.134 25 C -0.075 4.075 26 C 0.002 3.998 27 O -0.361 6.361 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.173 0.827 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.160 0.840 36 H 0.247 0.753 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.798 -2.554 -22.117 22.586 hybrid contribution -0.943 1.354 0.604 1.757 sum 2.855 -1.200 -21.513 21.735 Atomic orbital electron populations 1.21986 0.95934 1.02192 0.99634 1.21402 0.95177 0.97512 0.93363 0.93156 1.21063 1.33226 1.14304 0.87564 0.89410 1.24974 0.95284 0.96508 0.95634 1.69863 1.44294 1.39742 0.98074 0.86965 0.80985 0.83719 0.77447 1.20176 1.21948 1.19028 1.84200 0.99733 1.70966 1.37118 1.21374 0.97144 1.03896 0.97905 1.21683 0.95928 0.96929 0.97280 1.21082 0.93743 1.01268 0.98428 1.20972 0.99421 0.99520 0.94018 1.21150 0.92637 1.01026 0.99761 1.17224 0.91904 0.98294 0.87549 1.43518 1.28296 1.50364 1.08547 1.20535 0.83875 0.82683 0.82901 1.90635 1.25965 1.39524 1.81694 1.21976 0.95888 1.00967 0.90612 1.61571 1.54050 1.03841 1.04366 1.22653 0.98844 0.90008 1.01845 1.22207 0.95679 0.97132 0.92478 1.22182 0.84509 0.98383 0.94702 1.86639 1.18099 1.90594 1.40768 0.92715 0.93949 0.91728 0.92177 0.82683 0.86247 0.86365 0.83988 0.75260 0.87425 0.91620 0.89082 0.91355 0.96143 0.89757 0.93276 0.93430 0.93499 0.78057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.61 37.16 0.32 -2.49 16 2 C 0.05 1.20 1.61 -27.88 -0.04 1.15 16 3 H 0.05 1.14 6.43 -51.92 -0.33 0.81 16 4 C -0.52 -13.54 7.00 -34.45 -0.24 -13.78 16 5 H 0.09 2.55 7.96 -52.48 -0.42 2.13 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.88 -25.37 13.96 55.43 0.77 -24.60 16 8 Si 0.88 20.30 24.32 -169.99 -4.13 16.16 16 9 H -0.28 -6.19 6.92 56.52 0.39 -5.80 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.27 -5.85 6.53 56.52 0.37 -5.48 16 12 S -0.17 -3.24 19.94 -107.50 -2.14 -5.39 16 13 C -0.09 -1.74 6.11 -38.91 -0.24 -1.98 16 14 C -0.09 -1.93 8.85 -39.40 -0.35 -2.28 16 15 C -0.12 -2.23 10.04 -39.57 -0.40 -2.63 16 16 C -0.12 -1.97 10.04 -39.55 -0.40 -2.36 16 17 C -0.12 -2.19 8.72 -39.42 -0.34 -2.54 16 18 C 0.15 2.72 6.44 -83.43 -0.54 2.18 16 19 N -0.66 -9.92 5.18 -9.71 -0.05 -9.97 16 20 C 0.51 7.28 7.36 -10.99 -0.08 7.20 16 21 O -0.50 -8.60 11.48 5.54 0.06 -8.53 16 22 C 0.04 0.38 5.45 -4.98 -0.03 0.36 16 23 N -0.51 -5.65 4.45 -244.37 -1.09 -6.73 16 24 C 0.01 0.15 9.02 60.06 0.54 0.69 16 25 C 0.05 0.43 5.34 -3.83 -0.02 0.41 16 26 C 0.08 0.59 7.11 37.15 0.26 0.85 16 27 O -0.56 -5.19 13.61 -35.23 -0.48 -5.67 16 28 H 0.05 1.14 3.41 -51.93 -0.18 0.96 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.16 3.49 4.80 -52.48 -0.25 3.24 16 33 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 34 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 35 H 0.14 2.51 5.79 -52.49 -0.30 2.21 16 36 H 0.41 5.49 7.64 -40.82 -0.31 5.18 16 37 H 0.11 0.94 7.93 -51.92 -0.41 0.53 16 38 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 39 H 0.09 1.20 5.88 -51.93 -0.31 0.90 16 40 H 0.07 0.64 6.21 -51.93 -0.32 0.32 16 41 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 42 H 0.08 0.68 7.93 -51.93 -0.41 0.27 16 43 H 0.05 0.32 8.12 -51.93 -0.42 -0.10 16 44 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.05 0.32 6.26 -51.93 -0.33 -0.01 16 46 H 0.37 1.76 9.12 45.56 0.42 2.18 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -32.04 373.23 -8.80 -40.84 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -5.72 Total: 11.40 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.65 Total: -13.13 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -0.36 Total: -41.31 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.42 Total: -14.20 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.13 Total: 16.16 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.14 Total: -5.39 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.04 -8.80 -40.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108359366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.581 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds