Wall clock time and date at job start Tue Mar 31 2020 20:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47192 * 2 1 4 4 C 1.50693 * 109.47181 * 120.00461 * 2 1 3 5 5 H 1.08005 * 120.00160 * 119.99982 * 4 2 1 6 6 C 1.37873 * 120.00419 * 299.99618 * 4 2 1 7 7 N 1.31518 * 120.00587 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99665 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47323 * 89.99721 * 8 6 4 10 10 H 1.48499 * 109.47084 * 209.99517 * 8 6 4 11 11 H 1.48493 * 109.47317 * 329.99650 * 8 6 4 12 12 S 1.81399 * 109.46867 * 240.00527 * 2 1 3 13 13 C 1.76203 * 103.00011 * 169.87226 * 12 2 1 14 14 C 1.38783 * 120.10415 * 4.84590 * 13 12 2 15 15 C 1.38197 * 119.99250 * 179.97438 * 14 13 12 16 16 C 1.38305 * 120.19400 * 0.02692 * 15 14 13 17 17 C 1.38250 * 120.21255 * 359.67778 * 16 15 14 18 18 C 1.38650 * 120.00442 * 0.59949 * 17 16 15 19 19 N 1.40148 * 120.09656 * 179.70269 * 18 17 16 20 20 C 1.34771 * 119.99886 * 335.18978 * 19 18 17 21 21 O 1.21301 * 120.00195 * 354.43737 * 20 19 18 22 22 C 1.50696 * 120.00072 * 174.15386 * 20 19 18 23 23 N 1.46898 * 109.47337 * 180.27778 * 22 20 19 24 24 C 1.46900 * 110.99975 * 293.95233 * 23 22 20 25 25 C 1.46906 * 111.00301 * 170.00155 * 23 22 20 26 26 C 1.52989 * 109.47488 * 190.00230 * 25 23 22 27 27 O 1.42903 * 109.47386 * 64.99575 * 26 25 23 28 28 H 1.09000 * 109.46764 * 305.04202 * 1 2 3 29 29 H 1.09000 * 109.47145 * 65.03982 * 1 2 3 30 30 H 1.09002 * 109.46722 * 185.04386 * 1 2 3 31 31 H 0.96999 * 120.00245 * 180.02562 * 7 6 4 32 32 H 1.08006 * 120.00473 * 0.02562 * 14 13 12 33 33 H 1.08000 * 119.90293 * 180.02562 * 15 14 13 34 34 H 1.08005 * 119.88835 * 179.97438 * 16 15 14 35 35 H 1.07998 * 119.99657 * 180.31934 * 17 16 15 36 36 H 0.97003 * 119.99804 * 155.19583 * 19 18 17 37 37 H 1.09008 * 109.47468 * 300.28023 * 22 20 19 38 38 H 1.08998 * 109.47210 * 60.27675 * 22 20 19 39 39 H 1.09003 * 109.46900 * 60.00521 * 24 23 22 40 40 H 1.09003 * 109.47127 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47268 * 300.00110 * 24 23 22 42 42 H 1.09006 * 109.46908 * 310.00430 * 25 23 22 43 43 H 1.09003 * 109.46969 * 69.99623 * 25 23 22 44 44 H 1.09004 * 109.47414 * 185.00151 * 26 25 23 45 45 H 1.09002 * 109.46988 * 305.00070 * 26 25 23 46 46 H 0.96694 * 113.99768 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2396 2.4826 7 7 2.1374 -0.8599 3.5565 8 14 0.6249 1.2789 2.6542 9 1 -0.8027 0.8725 2.6999 10 1 0.9761 1.9948 3.9070 11 1 0.8472 2.1764 1.4923 12 16 2.1346 -0.8550 -1.4812 13 6 3.8602 -0.4988 -1.4679 14 6 4.4200 0.1930 -0.4030 15 6 5.7737 0.4707 -0.3947 16 6 6.5742 0.0617 -1.4458 17 6 6.0263 -0.6333 -2.5079 18 6 4.6681 -0.9115 -2.5278 19 7 4.1096 -1.6104 -3.6065 20 6 4.7125 -1.5835 -4.8116 21 8 5.6807 -0.8748 -4.9897 22 6 4.1877 -2.4386 -5.9360 23 7 5.0150 -2.2357 -7.1328 24 6 4.8766 -0.8649 -7.6423 25 6 4.6865 -3.2196 -8.1730 26 6 5.7240 -3.1418 -9.2946 27 8 7.0013 -3.5370 -8.7903 28 1 -0.3633 0.5901 0.8414 29 1 -0.3633 0.4337 -0.9317 30 1 -0.3633 -1.0237 0.0904 31 1 1.9028 -0.5288 4.4375 32 1 3.7979 0.5136 0.4196 33 1 6.2079 1.0088 0.4350 34 1 7.6315 0.2817 -1.4344 35 1 6.6555 -0.9556 -3.3244 36 1 3.2891 -2.1135 -3.4858 37 1 4.2245 -3.4877 -5.6424 38 1 3.1573 -2.1586 -6.1549 39 1 5.1929 -0.1583 -6.8749 40 1 5.4999 -0.7418 -8.5280 41 1 3.8347 -0.6772 -7.9018 42 1 4.6925 -4.2205 -7.7413 43 1 3.6974 -3.0043 -8.5773 44 1 5.4320 -3.8078 -10.1066 45 1 5.7810 -2.1188 -9.6665 46 1 7.7091 -3.5114 -9.4486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108359366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:11 Heat of formation + Delta-G solvation = -59.606761 kcal Electronic energy + Delta-G solvation = -26792.763404 eV Core-core repulsion = 23001.447658 eV Total energy + Delta-G solvation = -3791.315747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62267 -39.66367 -38.53085 -36.73074 -36.26251 -35.68146 -33.24323 -31.90128 -31.50970 -30.19563 -28.75053 -27.26880 -25.88606 -24.20256 -23.86666 -22.86755 -21.87014 -21.25316 -19.02521 -18.88815 -18.35365 -18.17108 -17.85140 -17.25554 -16.96875 -16.65991 -16.08356 -16.01597 -15.62711 -15.47509 -15.16178 -14.98877 -14.65762 -14.55407 -14.33050 -14.20288 -14.02045 -13.71378 -13.66022 -13.18293 -13.05005 -12.96099 -12.75958 -12.69313 -12.53083 -12.38527 -12.08275 -11.86659 -11.60995 -11.49886 -11.42578 -10.86009 -10.80861 -10.78137 -10.70465 -10.48312 -9.30283 -9.17873 -8.35378 -8.08722 -6.41253 0.24756 0.43805 0.82098 1.28210 1.34468 1.43017 1.58146 1.67963 1.92309 2.26363 2.84993 2.96264 2.99067 3.50785 3.60666 4.01604 4.08622 4.18983 4.24550 4.29199 4.31922 4.34541 4.43078 4.46415 4.51713 4.55546 4.56977 4.59178 4.62406 4.66754 4.77185 4.87306 4.91903 5.00864 5.16783 5.23996 5.28238 5.36351 5.39128 5.52744 5.64798 5.88512 6.07743 6.08921 6.12251 6.41267 6.62895 7.02774 7.08993 7.21047 8.80693 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021376 B = 0.002607 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.574117 B =10737.742114 C =11498.734940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.044 3.956 3 H 0.047 0.953 4 C -0.512 4.512 5 H 0.043 0.957 6 C 0.028 3.972 7 N -0.935 5.935 8 Si 0.938 3.062 9 H -0.261 1.261 10 H -0.298 1.298 11 H -0.247 1.247 12 S -0.135 6.135 13 C -0.115 4.115 14 C -0.117 4.117 15 C -0.131 4.131 16 C -0.107 4.107 17 C -0.131 4.131 18 C 0.152 3.848 19 N -0.659 5.659 20 C 0.512 3.488 21 O -0.534 6.534 22 C 0.043 3.957 23 N -0.538 5.538 24 C 0.019 3.981 25 C 0.050 3.950 26 C 0.077 3.923 27 O -0.587 6.587 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.269 0.731 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.418 0.582 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.975 -1.941 -24.678 24.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.085 4.085 3 H 0.065 0.935 4 C -0.550 4.550 5 H 0.061 0.939 6 C -0.172 4.172 7 N -0.573 5.573 8 Si 0.764 3.236 9 H -0.186 1.186 10 H -0.225 1.225 11 H -0.171 1.171 12 S 0.109 5.891 13 C -0.230 4.230 14 C -0.141 4.141 15 C -0.152 4.152 16 C -0.128 4.128 17 C -0.153 4.153 18 C 0.051 3.949 19 N -0.305 5.305 20 C 0.300 3.700 21 O -0.410 6.410 22 C -0.088 4.088 23 N -0.263 5.263 24 C -0.128 4.128 25 C -0.077 4.077 26 C -0.001 4.001 27 O -0.394 6.394 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.169 0.831 35 H 0.162 0.838 36 H 0.256 0.744 37 H 0.145 0.855 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.014 -2.299 -24.805 25.094 hybrid contribution -0.531 1.188 1.302 1.841 sum 2.484 -1.112 -23.503 23.660 Atomic orbital electron populations 1.21917 0.93898 1.02418 1.01198 1.21318 0.96850 0.97106 0.93188 0.93544 1.21051 1.31886 1.12708 0.89380 0.93866 1.25743 0.96754 0.99526 0.95199 1.70009 1.46618 1.42019 0.98700 0.86011 0.79730 0.80234 0.77597 1.18623 1.22537 1.17148 1.83853 0.99646 1.70946 1.34606 1.21514 0.97565 1.05153 0.98762 1.21563 0.96994 0.98436 0.97121 1.21289 0.92902 1.01452 0.99513 1.21317 1.00871 0.97826 0.92768 1.21331 0.92590 1.01277 1.00108 1.17350 0.92034 0.97764 0.87800 1.43586 1.28638 1.50036 1.08246 1.21315 0.83194 0.82334 0.83107 1.90622 1.27369 1.40853 1.82108 1.22013 0.96735 1.00954 0.89087 1.61532 1.55006 1.04425 1.05302 1.22534 0.99813 0.89457 1.01025 1.22336 0.97086 0.96250 0.92053 1.22313 0.83640 0.99166 0.94937 1.86580 1.19483 1.90803 1.42560 0.93048 0.90756 0.91909 0.92215 0.85398 0.84483 0.83087 0.83805 0.74395 0.85549 0.89132 0.92172 0.90526 0.94661 0.89739 0.91106 0.91005 0.93223 0.76167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 8.61 71.98 0.62 -4.62 16 2 C 0.04 1.96 1.61 29.85 0.05 2.00 16 3 H 0.05 2.10 6.43 -2.39 -0.02 2.08 16 4 C -0.51 -27.24 7.00 25.60 0.18 -27.06 16 5 H 0.04 2.64 7.96 -2.91 -0.02 2.61 16 6 C 0.03 1.55 5.45 84.65 0.46 2.01 16 7 N -0.93 -55.64 13.96 21.45 0.30 -55.34 16 8 Si 0.94 41.83 24.32 68.60 1.67 43.50 16 9 H -0.26 -10.96 6.92 99.48 0.69 -10.27 16 10 H -0.30 -13.45 7.11 99.48 0.71 -12.75 16 11 H -0.25 -10.23 6.53 99.48 0.65 -9.58 16 12 S -0.14 -5.24 19.94 -56.49 -1.13 -6.37 16 13 C -0.11 -4.59 6.11 22.71 0.14 -4.45 16 14 C -0.12 -4.91 8.85 22.39 0.20 -4.72 16 15 C -0.13 -4.68 10.04 22.28 0.22 -4.46 16 16 C -0.11 -3.44 10.04 22.29 0.22 -3.21 16 17 C -0.13 -4.55 8.72 22.37 0.20 -4.35 16 18 C 0.15 5.42 6.44 38.22 0.25 5.67 16 19 N -0.66 -19.10 5.18 -303.01 -1.57 -20.66 16 20 C 0.51 13.88 7.36 87.66 0.65 14.53 16 21 O -0.53 -17.90 11.48 -3.09 -0.04 -17.94 16 22 C 0.04 0.79 5.45 85.56 0.47 1.26 16 23 N -0.54 -10.70 4.45 -927.04 -4.12 -14.82 16 24 C 0.02 0.38 9.02 127.69 1.15 1.53 16 25 C 0.05 0.68 5.34 86.30 0.46 1.14 16 26 C 0.08 0.94 7.11 71.98 0.51 1.45 16 27 O -0.59 -10.01 13.61 -148.98 -2.03 -12.03 16 28 H 0.05 2.02 3.41 -2.39 -0.01 2.01 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.13 6.02 4.80 -2.91 -0.01 6.01 16 33 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 34 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 35 H 0.14 4.98 5.79 -2.91 -0.02 4.96 16 36 H 0.42 10.62 7.64 -92.71 -0.71 9.91 16 37 H 0.13 1.87 7.93 -2.38 -0.02 1.85 16 38 H 0.09 1.25 8.12 -2.39 -0.02 1.23 16 39 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16 40 H 0.08 1.32 6.21 -2.39 -0.01 1.30 16 41 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.08 1.14 7.93 -2.38 -0.02 1.12 16 43 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 44 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 45 H 0.05 0.56 6.26 -2.39 -0.01 0.55 16 46 H 0.39 3.15 9.12 -74.06 -0.68 2.47 16 Total: -1.00 -71.59 373.23 -1.58 -73.17 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -0.43 Total: 33.79 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 5.77 Total: -23.28 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -5.39 Total: -90.83 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -2.06 Total: -29.97 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.67 Total: 43.50 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -1.13 Total: -6.37 kcal Total: -71.59 -1.58 -73.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108359366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.564 kcal (2) G-P(sol) polarization free energy of solvation -71.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds