Wall clock time and date at job start Tue Mar 31 2020 20:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46947 * 2 1 4 4 C 1.50697 * 109.47510 * 239.99942 * 2 1 3 5 5 H 1.08002 * 119.99681 * 275.07443 * 4 2 1 6 6 C 1.37871 * 120.00227 * 95.06841 * 4 2 1 7 7 N 1.31517 * 120.00298 * 179.56612 * 6 4 2 8 8 Si 1.86801 * 119.99821 * 359.56668 * 6 4 2 9 9 H 1.48502 * 109.47225 * 84.72926 * 8 6 4 10 10 H 1.48507 * 109.47122 * 204.72173 * 8 6 4 11 11 H 1.48494 * 109.47309 * 324.72514 * 8 6 4 12 12 N 1.46501 * 109.47067 * 119.99565 * 2 1 3 13 13 C 1.46501 * 119.99933 * 60.00471 * 12 2 1 14 14 S 1.65602 * 120.00374 * 240.00122 * 12 2 1 15 15 O 1.42097 * 106.40532 * 203.54321 * 14 12 2 16 16 O 1.42100 * 106.40048 * 336.46318 * 14 12 2 17 17 C 1.76197 * 107.21863 * 89.99934 * 14 12 2 18 18 C 1.38312 * 120.02382 * 89.99827 * 17 14 12 19 19 C 1.38058 * 119.89224 * 180.08673 * 18 17 14 20 20 C 1.38607 * 120.48407 * 359.97438 * 19 18 17 21 21 C 1.38375 * 119.86532 * 359.78357 * 20 19 18 22 22 C 1.37802 * 120.02556 * 269.72767 * 17 14 12 23 23 N 1.39407 * 122.95961 * 180.54750 * 21 20 19 24 24 C 1.46893 * 111.00364 * 214.15866 * 23 21 20 25 25 C 1.46419 * 113.12952 * 339.71337 * 23 21 20 26 26 C 1.53383 * 108.66987 * 53.38103 * 25 23 21 27 27 C 1.50806 * 118.13151 * 179.42370 * 20 19 18 28 28 H 1.08998 * 109.47095 * 54.73930 * 1 2 3 29 29 H 1.09002 * 109.47320 * 294.73771 * 1 2 3 30 30 H 1.09002 * 109.46894 * 174.74044 * 1 2 3 31 31 H 0.96995 * 120.00197 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47547 * 89.99726 * 13 12 2 33 33 H 1.09006 * 109.47159 * 209.99803 * 13 12 2 34 34 H 1.08997 * 109.47223 * 329.99779 * 13 12 2 35 35 H 1.08000 * 120.05389 * 0.07668 * 18 17 14 36 36 H 1.07997 * 119.75536 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.79430 * 0.03597 * 22 17 14 38 38 H 1.09004 * 109.47132 * 53.28258 * 24 23 21 39 39 H 1.09003 * 109.47073 * 173.27926 * 24 23 21 40 40 H 1.09000 * 109.47471 * 293.27995 * 24 23 21 41 41 H 1.08998 * 109.60799 * 173.13698 * 25 23 21 42 42 H 1.09000 * 109.60784 * 293.46247 * 25 23 21 43 43 H 1.08999 * 109.76591 * 51.40156 * 26 25 23 44 44 H 1.08993 * 109.77167 * 172.13341 * 26 25 23 45 45 H 1.08997 * 109.44085 * 284.64312 * 27 20 19 46 46 H 1.09002 * 109.44016 * 44.53410 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1344 -1.7856 -1.2293 6 6 2.3617 0.0122 -2.3575 7 7 2.8082 -0.6070 -3.4284 8 14 2.1736 1.8707 -2.3634 9 1 3.3874 2.4930 -1.7764 10 1 1.9996 2.3461 -3.7595 11 1 0.9843 2.2504 -1.5594 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5793 1.1830 1.5749 17 6 1.8960 0.8537 3.4711 18 6 1.5374 0.1562 4.6104 19 6 0.6940 0.7375 5.5360 20 6 0.2026 2.0176 5.3332 21 6 0.5622 2.7218 4.1976 22 6 1.4169 2.1293 3.2660 23 7 0.1154 4.0158 3.9345 24 6 -0.0770 4.2235 2.4931 25 6 -1.0929 4.3702 4.6817 26 6 -0.8428 4.1087 6.1722 27 6 -0.7252 2.5959 6.3720 28 1 -0.3633 0.5933 -0.8391 29 1 -0.3634 0.4300 0.9334 30 1 -0.3633 -1.0234 -0.0942 31 1 3.0396 -0.0987 -4.2215 32 1 2.4158 -2.7377 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9848 35 1 1.9164 -0.8415 4.7755 36 1 0.4157 0.1910 6.4250 37 1 1.7016 2.6731 2.3774 38 1 -0.7248 3.4416 2.0967 39 1 -0.5376 5.1969 2.3246 40 1 0.8884 4.1860 1.9885 41 1 -1.3214 5.4249 4.5288 42 1 -1.9283 3.7613 4.3363 43 1 0.0826 4.5945 6.4815 44 1 -1.6760 4.4951 6.7592 45 1 -1.7100 2.1393 6.2732 46 1 -0.3290 2.3911 7.3666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152743616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:50 Heat of formation + Delta-G solvation = -35.321930 kcal Electronic energy + Delta-G solvation = -28868.478087 eV Core-core repulsion = 25078.215410 eV Total energy + Delta-G solvation = -3790.262677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.72589 -37.04758 -36.72071 -36.31835 -35.24933 -34.66488 -32.47648 -30.71009 -30.06929 -29.94585 -27.28756 -25.77116 -25.13923 -24.63657 -23.64614 -21.89968 -20.67604 -20.03375 -18.42772 -17.56274 -17.37670 -16.56169 -16.38378 -16.10991 -15.45195 -15.29923 -14.85860 -14.55231 -14.35683 -13.91902 -13.81762 -13.59744 -13.41343 -13.31472 -12.97862 -12.65366 -12.53410 -12.48590 -12.18437 -11.97993 -11.86823 -11.82460 -11.52167 -11.49082 -11.37040 -11.31109 -11.19824 -11.03083 -10.90883 -10.60182 -10.36530 -10.34049 -10.10140 -9.82692 -9.34249 -9.08204 -8.64785 -8.05908 -7.86749 -6.17927 -4.18161 0.74508 1.03641 1.29549 3.21331 3.28048 3.33153 3.41625 3.53960 3.77719 4.29373 4.35497 4.36364 4.45819 4.59030 4.64653 4.80511 5.01100 5.09120 5.12720 5.15308 5.18352 5.22835 5.29934 5.40794 5.48728 5.49688 5.55047 5.62595 5.68362 5.76611 5.81572 5.98947 6.01958 6.15482 6.21787 6.25858 6.31870 6.38216 6.51316 6.52351 6.57433 6.78247 6.88706 7.11805 7.16984 7.46826 7.62161 8.42142 8.87455 9.43122 10.93999 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014165 B = 0.004687 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.220741 B = 5972.381100 C = 7092.005736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.235 3.765 3 H 0.056 0.944 4 C -0.514 4.514 5 H 0.083 0.917 6 C 0.079 3.921 7 N -0.887 5.887 8 Si 0.862 3.138 9 H -0.262 1.262 10 H -0.285 1.285 11 H -0.263 1.263 12 N -0.974 5.974 13 C 0.106 3.894 14 S 2.672 3.328 15 O -0.969 6.969 16 O -0.955 6.955 17 C -0.645 4.645 18 C -0.053 4.053 19 C -0.116 4.116 20 C -0.082 4.082 21 C 0.105 3.895 22 C -0.057 4.057 23 N -0.497 5.497 24 C 0.016 3.984 25 C 0.055 3.945 26 C -0.123 4.123 27 C -0.083 4.083 28 H 0.055 0.945 29 H 0.024 0.976 30 H 0.055 0.945 31 H 0.267 0.733 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.142 0.858 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.776 7.279 18.389 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.132 3.868 3 H 0.074 0.926 4 C -0.554 4.554 5 H 0.101 0.899 6 C -0.126 4.126 7 N -0.524 5.524 8 Si 0.689 3.311 9 H -0.187 1.187 10 H -0.211 1.211 11 H -0.187 1.187 12 N -0.814 5.814 13 C -0.039 4.039 14 S 2.762 3.238 15 O -0.960 6.960 16 O -0.945 6.945 17 C -0.730 4.730 18 C -0.073 4.073 19 C -0.135 4.135 20 C -0.085 4.085 21 C 0.006 3.994 22 C -0.078 4.078 23 N -0.210 5.210 24 C -0.130 4.130 25 C -0.071 4.071 26 C -0.161 4.161 27 C -0.120 4.120 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.159 0.841 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.509 7.774 18.356 22.086 hybrid contribution -1.193 0.703 -0.056 1.386 sum -10.702 8.477 18.300 22.831 Atomic orbital electron populations 1.22282 0.98381 1.01398 0.98897 1.19100 0.91083 0.93243 0.83410 0.92649 1.21137 1.43943 0.96083 0.94246 0.89872 1.24988 0.93698 0.98391 0.95495 1.69877 1.42694 1.36271 1.03539 0.87076 0.80200 0.86443 0.77420 1.18716 1.21141 1.18743 1.57710 1.70420 1.19648 1.33580 1.21226 1.01811 0.81686 0.99222 1.02738 0.74482 0.73622 0.72926 1.93508 1.68471 1.59007 1.74966 1.93559 1.73443 1.56144 1.71379 1.31324 1.20228 1.05716 1.15707 1.20730 0.95192 0.99417 0.91974 1.21020 0.98260 0.94494 0.99718 1.19726 0.98950 0.94320 0.95509 1.18620 0.97909 0.87900 0.95002 1.20917 0.94858 0.93261 0.98791 1.58150 1.32360 1.21194 1.09319 1.22646 1.03098 1.02023 0.85241 1.22191 0.89586 1.01526 0.93824 1.21726 1.03141 0.95871 0.95328 1.20616 0.98447 0.95499 0.97417 0.92559 0.95651 0.92601 0.92279 0.92451 0.92916 0.91011 0.84478 0.85338 0.84066 0.93625 0.90301 0.89832 0.89582 0.93493 0.90414 0.90326 0.90334 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.01 37.16 0.33 -2.59 16 2 C 0.23 5.35 2.22 -69.08 -0.15 5.20 16 3 H 0.06 1.32 4.31 -51.93 -0.22 1.10 16 4 C -0.51 -13.84 8.83 -34.44 -0.30 -14.15 16 5 H 0.08 2.39 7.67 -52.49 -0.40 1.98 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 8 Si 0.86 21.10 26.57 -169.99 -4.52 16.59 16 9 H -0.26 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.26 -5.86 6.51 56.52 0.37 -5.49 16 12 N -0.97 -19.88 3.06 -115.85 -0.35 -20.24 16 13 C 0.11 1.85 9.39 59.85 0.56 2.41 16 14 S 2.67 53.98 5.64 -107.50 -0.61 53.37 16 15 O -0.97 -20.39 16.36 -57.17 -0.94 -21.32 16 16 O -0.96 -22.31 15.83 -57.17 -0.90 -23.22 16 17 C -0.65 -10.86 5.96 -39.71 -0.24 -11.10 16 18 C -0.05 -0.76 9.52 -39.62 -0.38 -1.14 16 19 C -0.12 -1.40 9.63 -39.51 -0.38 -1.78 16 20 C -0.08 -0.99 5.74 -104.38 -0.60 -1.59 16 21 C 0.10 1.47 5.80 -83.85 -0.49 0.98 16 22 C -0.06 -0.92 8.51 -39.22 -0.33 -1.26 16 23 N -0.50 -6.02 4.78 -179.14 -0.86 -6.87 16 24 C 0.02 0.18 8.76 60.06 0.53 0.70 16 25 C 0.06 0.49 5.44 -3.89 -0.02 0.47 16 26 C -0.12 -0.96 6.19 -26.51 -0.16 -1.12 16 27 C -0.08 -0.70 5.81 -27.81 -0.16 -0.87 16 28 H 0.06 1.11 7.35 -51.93 -0.38 0.72 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 1.03 6.89 -51.93 -0.36 0.68 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 34 H 0.07 1.15 6.54 -51.93 -0.34 0.81 16 35 H 0.14 1.78 7.62 -52.49 -0.40 1.38 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.14 2.35 5.58 -52.49 -0.29 2.06 16 38 H 0.05 0.53 8.10 -51.93 -0.42 0.11 16 39 H 0.08 0.70 8.01 -51.93 -0.42 0.28 16 40 H 0.08 1.03 6.48 -51.93 -0.34 0.70 16 41 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 42 H 0.05 0.42 8.11 -51.93 -0.42 -0.01 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -33.43 370.99 -10.65 -44.08 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.95 Total: 1.28 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -1.89 Total: -23.70 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.44 Total: -52.68 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.84 Total: -44.54 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.52 Total: 16.59 kcal Atomic # 16 Polarization: 53.98 SS G_CDS: -0.61 Total: 53.37 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.43 -10.65 -44.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152743616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.761 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds