Wall clock time and date at job start Tue Mar 31 2020 20:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46947 * 2 1 4 4 C 1.50697 * 109.47510 * 239.99942 * 2 1 3 5 5 H 1.08002 * 119.99681 * 275.07443 * 4 2 1 6 6 C 1.37871 * 120.00227 * 95.06841 * 4 2 1 7 7 N 1.31517 * 120.00298 * 179.56612 * 6 4 2 8 8 Si 1.86801 * 119.99821 * 359.56668 * 6 4 2 9 9 H 1.48502 * 109.47225 * 84.72926 * 8 6 4 10 10 H 1.48507 * 109.47122 * 204.72173 * 8 6 4 11 11 H 1.48494 * 109.47309 * 324.72514 * 8 6 4 12 12 N 1.46501 * 109.47067 * 119.99565 * 2 1 3 13 13 C 1.46501 * 119.99933 * 60.00471 * 12 2 1 14 14 S 1.65602 * 120.00374 * 240.00122 * 12 2 1 15 15 O 1.42097 * 106.40532 * 203.54321 * 14 12 2 16 16 O 1.42100 * 106.40048 * 336.46318 * 14 12 2 17 17 C 1.76197 * 107.21863 * 89.99934 * 14 12 2 18 18 C 1.38312 * 120.02382 * 89.99827 * 17 14 12 19 19 C 1.38058 * 119.89224 * 180.08673 * 18 17 14 20 20 C 1.38607 * 120.48407 * 359.97438 * 19 18 17 21 21 C 1.38375 * 119.86532 * 359.78357 * 20 19 18 22 22 C 1.37802 * 120.02556 * 269.72767 * 17 14 12 23 23 N 1.39407 * 122.95961 * 180.54750 * 21 20 19 24 24 C 1.46893 * 111.00364 * 214.15866 * 23 21 20 25 25 C 1.46419 * 113.12952 * 339.71337 * 23 21 20 26 26 C 1.53383 * 108.66987 * 53.38103 * 25 23 21 27 27 C 1.50806 * 118.13151 * 179.42370 * 20 19 18 28 28 H 1.08998 * 109.47095 * 54.73930 * 1 2 3 29 29 H 1.09002 * 109.47320 * 294.73771 * 1 2 3 30 30 H 1.09002 * 109.46894 * 174.74044 * 1 2 3 31 31 H 0.96995 * 120.00197 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47547 * 89.99726 * 13 12 2 33 33 H 1.09006 * 109.47159 * 209.99803 * 13 12 2 34 34 H 1.08997 * 109.47223 * 329.99779 * 13 12 2 35 35 H 1.08000 * 120.05389 * 0.07668 * 18 17 14 36 36 H 1.07997 * 119.75536 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.79430 * 0.03597 * 22 17 14 38 38 H 1.09004 * 109.47132 * 53.28258 * 24 23 21 39 39 H 1.09003 * 109.47073 * 173.27926 * 24 23 21 40 40 H 1.09000 * 109.47471 * 293.27995 * 24 23 21 41 41 H 1.08998 * 109.60799 * 173.13698 * 25 23 21 42 42 H 1.09000 * 109.60784 * 293.46247 * 25 23 21 43 43 H 1.08999 * 109.76591 * 51.40156 * 26 25 23 44 44 H 1.08993 * 109.77167 * 172.13341 * 26 25 23 45 45 H 1.08997 * 109.44085 * 284.64312 * 27 20 19 46 46 H 1.09002 * 109.44016 * 44.53410 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1344 -1.7856 -1.2293 6 6 2.3617 0.0122 -2.3575 7 7 2.8082 -0.6070 -3.4284 8 14 2.1736 1.8707 -2.3634 9 1 3.3874 2.4930 -1.7764 10 1 1.9996 2.3461 -3.7595 11 1 0.9843 2.2504 -1.5594 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5793 1.1830 1.5749 17 6 1.8960 0.8537 3.4711 18 6 1.5374 0.1562 4.6104 19 6 0.6940 0.7375 5.5360 20 6 0.2026 2.0176 5.3332 21 6 0.5622 2.7218 4.1976 22 6 1.4169 2.1293 3.2660 23 7 0.1154 4.0158 3.9345 24 6 -0.0770 4.2235 2.4931 25 6 -1.0929 4.3702 4.6817 26 6 -0.8428 4.1087 6.1722 27 6 -0.7252 2.5959 6.3720 28 1 -0.3633 0.5933 -0.8391 29 1 -0.3634 0.4300 0.9334 30 1 -0.3633 -1.0234 -0.0942 31 1 3.0396 -0.0987 -4.2215 32 1 2.4158 -2.7377 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9848 35 1 1.9164 -0.8415 4.7755 36 1 0.4157 0.1910 6.4250 37 1 1.7016 2.6731 2.3774 38 1 -0.7248 3.4416 2.0967 39 1 -0.5376 5.1969 2.3246 40 1 0.8884 4.1860 1.9885 41 1 -1.3214 5.4249 4.5288 42 1 -1.9283 3.7613 4.3363 43 1 0.0826 4.5945 6.4815 44 1 -1.6760 4.4951 6.7592 45 1 -1.7100 2.1393 6.2732 46 1 -0.3290 2.3911 7.3666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152743616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:49 Heat of formation + Delta-G solvation = -59.104953 kcal Electronic energy + Delta-G solvation = -28869.509397 eV Core-core repulsion = 25078.215410 eV Total energy + Delta-G solvation = -3791.293987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.63989 -38.43629 -38.05835 -37.92328 -36.93605 -35.45266 -34.52303 -31.71393 -31.63019 -31.03772 -28.09185 -27.39006 -26.99937 -25.54451 -24.54275 -22.86218 -22.41225 -20.98920 -19.77466 -19.27445 -18.94712 -18.17246 -17.58686 -17.12216 -16.85411 -16.50509 -16.19258 -15.72262 -15.46117 -15.23921 -14.90362 -14.79381 -14.58670 -14.53760 -14.38855 -14.17615 -13.91232 -13.57993 -13.46945 -13.43439 -13.24761 -13.09634 -13.01548 -12.98881 -12.76944 -12.63307 -12.44138 -12.32069 -12.14158 -12.07270 -11.79175 -11.75685 -11.46818 -11.25641 -11.01309 -10.78569 -10.09834 -9.71059 -8.81863 -8.33514 -6.37240 -0.65665 -0.22804 0.25949 1.28237 1.39000 1.40552 1.98101 2.31310 2.38171 2.72393 2.79459 3.06211 3.28107 3.61480 3.65826 3.82375 3.99248 4.00137 4.13412 4.16167 4.24712 4.38553 4.41785 4.44636 4.52956 4.61294 4.67895 4.69883 4.76457 4.78317 4.80936 4.85849 4.91376 4.93442 4.98777 5.02850 5.09064 5.11859 5.26406 5.29358 5.30825 5.50890 5.55311 5.59078 5.90813 5.92409 6.18522 6.30912 6.69148 7.28185 8.82268 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014165 B = 0.004687 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.220741 B = 5972.381100 C = 7092.005736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.236 3.764 3 H 0.044 0.956 4 C -0.517 4.517 5 H 0.052 0.948 6 C 0.024 3.976 7 N -0.937 5.937 8 Si 0.908 3.092 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.228 1.228 12 N -0.984 5.984 13 C 0.099 3.901 14 S 2.678 3.322 15 O -0.986 6.986 16 O -0.999 6.999 17 C -0.649 4.649 18 C -0.063 4.063 19 C -0.106 4.106 20 C -0.076 4.076 21 C 0.099 3.901 22 C -0.083 4.083 23 N -0.507 5.507 24 C 0.013 3.987 25 C 0.049 3.951 26 C -0.120 4.120 27 C -0.083 4.083 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.268 0.732 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.148 0.852 36 H 0.169 0.831 37 H 0.125 0.875 38 H 0.041 0.959 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.103 0.897 42 H 0.052 0.948 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.107 8.777 22.331 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.132 3.868 3 H 0.062 0.938 4 C -0.557 4.557 5 H 0.070 0.930 6 C -0.176 4.176 7 N -0.576 5.576 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.202 1.202 11 H -0.150 1.150 12 N -0.823 5.823 13 C -0.046 4.046 14 S 2.774 3.226 15 O -0.976 6.976 16 O -0.990 6.990 17 C -0.740 4.740 18 C -0.084 4.084 19 C -0.126 4.126 20 C -0.080 4.080 21 C -0.001 4.001 22 C -0.105 4.105 23 N -0.220 5.220 24 C -0.132 4.132 25 C -0.076 4.076 26 C -0.158 4.158 27 C -0.119 4.119 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.166 0.834 36 H 0.187 0.813 37 H 0.143 0.857 38 H 0.060 0.940 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.122 0.878 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.127 0.873 45 H 0.117 0.883 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.837 9.240 22.256 27.304 hybrid contribution -0.177 0.234 -1.047 1.088 sum -13.014 9.474 21.209 26.626 Atomic orbital electron populations 1.22133 0.95358 1.02270 1.00374 1.18957 0.93224 0.92144 0.82473 0.93811 1.21417 1.43156 0.94989 0.96098 0.92990 1.25728 0.93946 1.02579 0.95326 1.70001 1.45338 1.37887 1.04410 0.86337 0.80809 0.81505 0.78226 1.20538 1.20170 1.15019 1.57403 1.70317 1.20953 1.33631 1.21434 1.01873 0.79795 1.01449 1.01939 0.74601 0.72906 0.73125 1.93476 1.69514 1.59645 1.75008 1.93499 1.75195 1.57274 1.72987 1.30501 1.21356 1.06353 1.15767 1.20994 0.95780 0.99962 0.91616 1.21461 0.96495 0.94548 1.00056 1.20293 0.98274 0.94106 0.95286 1.18812 0.97417 0.88712 0.95112 1.20898 0.96604 0.93399 0.99592 1.58177 1.34035 1.20008 1.09787 1.22669 1.02175 1.03308 0.85090 1.22405 0.88249 1.02691 0.94300 1.21765 1.03871 0.95486 0.94671 1.20777 0.98453 0.95792 0.96925 0.92686 0.92745 0.91801 0.92317 0.94274 0.89544 0.89590 0.83389 0.81329 0.85698 0.94004 0.87762 0.91786 0.87846 0.92964 0.91523 0.87277 0.88278 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.34 9.01 71.98 0.65 -4.69 16 2 C 0.24 10.89 2.22 44.24 0.10 10.99 16 3 H 0.04 2.13 4.31 -2.38 -0.01 2.12 16 4 C -0.52 -28.90 8.83 25.60 0.23 -28.67 16 5 H 0.05 3.15 7.67 -2.91 -0.02 3.13 16 6 C 0.02 1.38 5.47 84.65 0.46 1.84 16 7 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 8 Si 0.91 44.38 26.57 68.60 1.82 46.20 16 9 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.23 -9.70 6.51 99.48 0.65 -9.05 16 12 N -0.98 -40.62 3.06 -520.44 -1.59 -42.22 16 13 C 0.10 3.44 9.39 127.77 1.20 4.64 16 14 S 2.68 110.33 5.64 -56.49 -0.32 110.01 16 15 O -0.99 -42.03 16.36 -128.00 -2.09 -44.12 16 16 O -1.00 -48.84 15.83 -128.00 -2.03 -50.87 16 17 C -0.65 -21.34 5.96 22.18 0.13 -21.21 16 18 C -0.06 -1.65 9.52 22.24 0.21 -1.44 16 19 C -0.11 -2.11 9.63 22.32 0.21 -1.90 16 20 C -0.08 -1.54 5.74 -19.71 -0.11 -1.65 16 21 C 0.10 2.56 5.80 38.30 0.22 2.78 16 22 C -0.08 -2.65 8.51 22.50 0.19 -2.45 16 23 N -0.51 -11.06 4.78 -720.66 -3.44 -14.50 16 24 C 0.01 0.28 8.76 127.69 1.12 1.40 16 25 C 0.05 0.68 5.44 86.52 0.47 1.15 16 26 C -0.12 -1.29 6.19 30.74 0.19 -1.10 16 27 C -0.08 -0.95 5.81 29.90 0.17 -0.78 16 28 H 0.05 2.07 7.35 -2.39 -0.02 2.05 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 2.27 6.89 -2.39 -0.02 2.26 16 31 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 32 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.09 2.36 7.79 -2.38 -0.02 2.34 16 34 H 0.09 2.69 6.54 -2.39 -0.02 2.68 16 35 H 0.15 3.46 7.62 -2.91 -0.02 3.44 16 36 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.13 4.31 5.58 -2.91 -0.02 4.30 16 38 H 0.04 0.91 8.10 -2.38 -0.02 0.89 16 39 H 0.10 1.60 8.01 -2.39 -0.02 1.58 16 40 H 0.06 1.59 6.48 -2.39 -0.02 1.58 16 41 H 0.10 1.08 8.12 -2.39 -0.02 1.06 16 42 H 0.05 0.70 8.11 -2.39 -0.02 0.68 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -77.35 370.99 -0.99 -78.34 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.92 Total: 16.18 kcal Atomic # 6 Polarization: -46.54 SS G_CDS: 5.45 Total: -41.09 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -4.74 Total: -114.65 kcal Atomic # 8 Polarization: -90.87 SS G_CDS: -4.12 Total: -94.99 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.82 Total: 46.20 kcal Atomic # 16 Polarization: 110.33 SS G_CDS: -0.32 Total: 110.01 kcal Total: -77.35 -0.99 -78.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152743616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.230 kcal (2) G-P(sol) polarization free energy of solvation -77.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds