Wall clock time and date at job start Tue Mar 31 2020 21:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47208 * 2 1 4 4 C 1.52995 * 109.47271 * 120.00142 * 2 1 3 5 5 N 1.46491 * 109.47333 * 174.99731 * 4 2 1 6 6 S 1.65602 * 120.00364 * 164.99849 * 5 4 2 7 7 O 1.42099 * 104.28022 * 181.07157 * 6 5 4 8 8 O 1.42097 * 104.27793 * 308.92918 * 6 5 4 9 9 C 1.81397 * 104.44885 * 65.00031 * 6 5 4 10 10 C 1.53005 * 109.47190 * 180.02562 * 9 6 5 11 11 C 1.50700 * 109.46863 * 179.97438 * 10 9 6 12 12 H 1.07998 * 120.00657 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99669 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99958 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99954 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47276 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46900 * 119.99845 * 15 13 11 18 18 H 1.48496 * 109.47358 * 239.99767 * 15 13 11 19 19 N 1.46900 * 109.46754 * 240.00107 * 2 1 3 20 20 C 1.47904 * 111.00324 * 69.86085 * 19 2 1 21 21 C 1.54591 * 102.62939 * 265.41758 * 20 19 2 22 22 C 1.51574 * 102.83106 * 334.44016 * 21 20 19 23 23 C 1.37919 * 131.56343 * 196.52033 * 22 21 20 24 24 C 1.38303 * 120.07992 * 179.79802 * 23 22 21 25 25 C 1.38307 * 119.88143 * 359.49570 * 24 23 22 26 26 C 1.37910 * 120.26663 * 0.35323 * 25 24 23 27 27 C 1.38970 * 107.94876 * 16.03978 * 22 21 20 28 28 H 1.08992 * 109.47179 * 59.99615 * 1 2 3 29 29 H 1.08996 * 109.46876 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46671 * 300.00045 * 1 2 3 31 31 H 1.09008 * 109.47175 * 294.99770 * 4 2 1 32 32 H 1.09004 * 109.47389 * 54.99328 * 4 2 1 33 33 H 0.97002 * 120.00104 * 345.00050 * 5 4 2 34 34 H 1.09003 * 109.47545 * 299.99969 * 9 6 5 35 35 H 1.08998 * 109.47508 * 60.00232 * 9 6 5 36 36 H 1.08990 * 109.47010 * 300.00139 * 10 9 6 37 37 H 1.09007 * 109.46685 * 60.00004 * 10 9 6 38 38 H 0.97002 * 119.99870 * 180.02562 * 14 13 11 39 39 H 1.08999 * 110.77879 * 23.70640 * 20 19 2 40 40 H 1.09000 * 110.77691 * 147.13250 * 20 19 2 41 41 H 1.09006 * 110.74248 * 92.77337 * 21 20 19 42 42 H 1.08999 * 110.74348 * 216.10373 * 21 20 19 43 43 H 1.07997 * 119.96329 * 359.51665 * 23 22 21 44 44 H 1.08002 * 120.06144 * 179.78223 * 24 23 22 45 45 H 1.07999 * 119.86731 * 180.36943 * 25 24 23 46 46 H 1.08000 * 119.90104 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 16 4.3575 -1.2177 2.5521 7 8 5.7139 -1.2019 2.1288 8 8 3.8866 -0.3075 3.5364 9 6 3.8335 -2.9090 2.9465 10 6 4.5644 -3.3897 4.2018 11 6 4.1286 -4.7946 4.5298 12 1 3.4033 -5.2947 3.9052 13 6 4.6559 -5.4414 5.6273 14 7 5.5396 -4.8326 6.3877 15 14 4.1153 -7.1825 6.0343 16 1 3.1192 -7.6387 5.0317 17 1 5.2938 -8.0856 6.0083 18 1 3.5025 -7.2072 7.3867 19 7 2.0196 -0.6925 -1.1995 20 6 1.7481 0.1011 -2.4177 21 6 0.4065 -0.4869 -2.9120 22 6 0.4228 -1.8903 -2.3397 23 6 -0.3180 -3.0124 -2.6468 24 6 -0.1003 -4.1951 -1.9637 25 6 0.8691 -4.2537 -0.9790 26 6 1.6148 -3.1354 -0.6703 27 6 1.3967 -1.9377 -1.3494 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 3.9646 -0.6669 0.3540 34 1 2.7582 -2.9242 3.1244 35 1 4.0729 -3.5676 2.1117 36 1 5.6397 -3.3745 4.0244 37 1 4.3245 -2.7310 5.0365 38 1 5.9109 -5.2878 7.1596 39 1 1.6409 1.1582 -2.1746 40 1 2.5326 -0.0486 -3.1595 41 1 -0.4341 0.0822 -2.5148 42 1 0.3751 -0.5145 -4.0012 43 1 -1.0722 -2.9662 -3.4184 44 1 -0.6830 -5.0726 -2.2020 45 1 1.0431 -5.1790 -0.4499 46 1 2.3700 -3.1877 0.1000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171979999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:16 Heat of formation + Delta-G solvation = -34.515295 kcal Electronic energy + Delta-G solvation = -27952.164581 eV Core-core repulsion = 24161.936882 eV Total energy + Delta-G solvation = -3790.227699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47146 -37.52654 -36.52032 -35.50343 -35.29831 -33.86483 -32.38921 -31.21373 -31.11776 -29.37860 -28.71975 -25.71210 -25.57138 -23.28168 -22.64445 -21.63222 -21.43332 -20.28512 -18.78362 -17.39832 -17.18518 -16.48679 -16.23849 -16.04578 -15.72901 -15.57547 -15.30879 -14.99061 -14.53936 -14.39576 -13.77644 -13.58004 -13.43153 -13.19253 -12.90460 -12.77612 -12.67717 -12.48821 -12.46191 -12.34354 -11.87366 -11.71714 -11.59021 -11.52380 -11.43195 -11.34772 -11.08317 -10.99116 -10.92074 -10.81696 -10.37801 -10.35864 -9.76205 -9.65709 -9.40869 -8.98688 -8.90539 -8.48855 -8.10760 -6.10729 -4.15938 0.87192 1.13725 1.23256 3.17187 3.26192 3.33454 3.36566 3.39946 3.58215 4.25149 4.30704 4.40354 4.43565 4.53555 4.60326 4.76247 4.82226 4.88583 4.94812 4.99814 5.13847 5.17707 5.24619 5.32032 5.35453 5.38217 5.41820 5.46904 5.59103 5.65016 5.66954 5.72281 5.74430 5.88071 5.91912 6.07740 6.22534 6.27148 6.38638 6.52413 6.55919 6.70878 7.07990 7.31129 7.33286 7.40220 7.82536 8.19858 8.87663 9.48670 11.00386 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.003521 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.807673 B = 7950.614116 C = 9578.438075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.078 3.922 3 H 0.098 0.902 4 C 0.121 3.879 5 N -1.119 6.119 6 S 2.593 3.407 7 O -0.968 6.968 8 O -0.970 6.970 9 C -0.591 4.591 10 C 0.028 3.972 11 C -0.518 4.518 12 H 0.062 0.938 13 C 0.057 3.943 14 N -0.890 5.890 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 N -0.487 5.487 20 C 0.051 3.949 21 C -0.112 4.112 22 C -0.140 4.140 23 C -0.093 4.093 24 C -0.133 4.133 25 C -0.102 4.102 26 C -0.110 4.110 27 C 0.097 3.903 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.419 0.581 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.123 0.877 45 H 0.129 0.871 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.956 8.497 -20.298 26.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.029 4.029 3 H 0.116 0.884 4 C -0.006 4.006 5 N -0.877 5.877 6 S 2.690 3.310 7 O -0.958 6.958 8 O -0.960 6.960 9 C -0.725 4.725 10 C -0.011 4.011 11 C -0.557 4.557 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.529 5.529 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 N -0.204 5.204 20 C -0.076 4.076 21 C -0.150 4.150 22 C -0.142 4.142 23 C -0.112 4.112 24 C -0.151 4.151 25 C -0.121 4.121 26 C -0.129 4.129 27 C 0.001 3.999 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.254 0.746 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.135 0.865 44 H 0.141 0.859 45 H 0.147 0.853 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.739 9.067 -19.445 24.952 hybrid contribution -1.269 -1.451 -0.371 1.964 sum -14.009 7.615 -19.816 25.434 Atomic orbital electron populations 1.22635 0.95839 1.03351 1.02964 1.22058 0.93645 0.98289 0.88949 0.88415 1.21377 0.80602 1.00792 0.97871 1.55611 1.15127 1.87926 1.29080 1.05484 0.73901 0.78471 0.73111 1.93552 1.33394 1.87959 1.80903 1.93530 1.81713 1.61012 1.59736 1.30466 1.11190 1.20089 1.10721 1.18956 0.95468 0.98377 0.88294 1.21039 1.25209 0.98220 1.11277 0.92015 1.25069 0.94932 0.98434 0.96081 1.69969 1.28809 1.37549 1.16529 0.86431 0.78538 0.84090 0.78326 1.19657 1.20817 1.20836 1.60276 1.55532 1.01186 1.03407 1.23144 0.95903 0.97399 0.91177 1.21833 0.99096 0.92623 1.01427 1.20936 0.97189 0.95565 1.00560 1.20358 0.99246 0.91808 0.99788 1.21062 0.99224 0.97691 0.97137 1.21049 0.95432 0.98238 0.97352 1.20722 1.00795 0.90574 1.00852 1.19401 0.92796 0.91228 0.96450 0.91563 0.91558 0.91329 0.89594 0.91631 0.74570 0.86460 0.86168 0.94856 0.94874 0.92618 0.89643 0.89146 0.89775 0.90005 0.86526 0.85909 0.85320 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.51 7.96 37.16 0.30 -1.21 16 2 C 0.08 0.72 2.45 -67.71 -0.17 0.55 16 3 H 0.10 0.82 7.85 -51.93 -0.41 0.41 16 4 C 0.12 1.38 5.17 -4.05 -0.02 1.36 16 5 N -1.12 -14.91 5.80 -10.62 -0.06 -14.97 16 6 S 2.59 46.84 5.46 -107.50 -0.59 46.26 16 7 O -0.97 -20.53 18.08 -57.54 -1.04 -21.57 16 8 O -0.97 -20.22 17.50 -57.54 -1.01 -21.23 16 9 C -0.59 -11.28 6.01 37.16 0.22 -11.06 16 10 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 11 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 15 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 N -0.49 -4.66 4.32 -161.50 -0.70 -5.36 16 20 C 0.05 0.37 6.71 -2.43 -0.02 0.35 16 21 C -0.11 -0.77 6.19 -26.62 -0.16 -0.94 16 22 C -0.14 -1.30 5.39 -104.04 -0.56 -1.86 16 23 C -0.09 -0.83 10.03 -39.67 -0.40 -1.23 16 24 C -0.13 -1.22 10.06 -39.53 -0.40 -1.62 16 25 C -0.10 -1.06 10.02 -39.68 -0.40 -1.46 16 26 C -0.11 -1.25 8.55 -39.27 -0.34 -1.59 16 27 C 0.10 1.02 4.06 -83.40 -0.34 0.69 16 28 H 0.07 0.45 5.24 -51.93 -0.27 0.18 16 29 H 0.07 0.62 6.68 -51.93 -0.35 0.27 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.99 7.69 -51.92 -0.40 0.59 16 32 H 0.07 0.73 5.94 -51.93 -0.31 0.42 16 33 H 0.42 5.19 8.05 -34.47 -0.28 4.91 16 34 H 0.12 1.99 8.14 -51.92 -0.42 1.56 16 35 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.09 0.48 7.60 -51.93 -0.39 0.09 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.52 6.06 -51.93 -0.31 0.20 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.13 1.52 7.26 -52.49 -0.38 1.14 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -35.25 377.02 -11.69 -46.94 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.87 Total: 4.40 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: -2.83 Total: -30.51 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.02 Total: -46.15 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -2.05 Total: -42.80 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 46.84 SS G_CDS: -0.59 Total: 46.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.25 -11.69 -46.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171979999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.426 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds