Wall clock time and date at job start Tue Mar 31 2020 21:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47208 * 2 1 4 4 C 1.52995 * 109.47271 * 120.00142 * 2 1 3 5 5 N 1.46491 * 109.47333 * 174.99731 * 4 2 1 6 6 S 1.65602 * 120.00364 * 164.99849 * 5 4 2 7 7 O 1.42099 * 104.28022 * 181.07157 * 6 5 4 8 8 O 1.42097 * 104.27793 * 308.92918 * 6 5 4 9 9 C 1.81397 * 104.44885 * 65.00031 * 6 5 4 10 10 C 1.53005 * 109.47190 * 180.02562 * 9 6 5 11 11 C 1.50700 * 109.46863 * 179.97438 * 10 9 6 12 12 H 1.07998 * 120.00657 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99669 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99958 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99954 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47276 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46900 * 119.99845 * 15 13 11 18 18 H 1.48496 * 109.47358 * 239.99767 * 15 13 11 19 19 N 1.46900 * 109.46754 * 240.00107 * 2 1 3 20 20 C 1.47904 * 111.00324 * 69.86085 * 19 2 1 21 21 C 1.54591 * 102.62939 * 265.41758 * 20 19 2 22 22 C 1.51574 * 102.83106 * 334.44016 * 21 20 19 23 23 C 1.37919 * 131.56343 * 196.52033 * 22 21 20 24 24 C 1.38303 * 120.07992 * 179.79802 * 23 22 21 25 25 C 1.38307 * 119.88143 * 359.49570 * 24 23 22 26 26 C 1.37910 * 120.26663 * 0.35323 * 25 24 23 27 27 C 1.38970 * 107.94876 * 16.03978 * 22 21 20 28 28 H 1.08992 * 109.47179 * 59.99615 * 1 2 3 29 29 H 1.08996 * 109.46876 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46671 * 300.00045 * 1 2 3 31 31 H 1.09008 * 109.47175 * 294.99770 * 4 2 1 32 32 H 1.09004 * 109.47389 * 54.99328 * 4 2 1 33 33 H 0.97002 * 120.00104 * 345.00050 * 5 4 2 34 34 H 1.09003 * 109.47545 * 299.99969 * 9 6 5 35 35 H 1.08998 * 109.47508 * 60.00232 * 9 6 5 36 36 H 1.08990 * 109.47010 * 300.00139 * 10 9 6 37 37 H 1.09007 * 109.46685 * 60.00004 * 10 9 6 38 38 H 0.97002 * 119.99870 * 180.02562 * 14 13 11 39 39 H 1.08999 * 110.77879 * 23.70640 * 20 19 2 40 40 H 1.09000 * 110.77691 * 147.13250 * 20 19 2 41 41 H 1.09006 * 110.74248 * 92.77337 * 21 20 19 42 42 H 1.08999 * 110.74348 * 216.10373 * 21 20 19 43 43 H 1.07997 * 119.96329 * 359.51665 * 23 22 21 44 44 H 1.08002 * 120.06144 * 179.78223 * 24 23 22 45 45 H 1.07999 * 119.86731 * 180.36943 * 25 24 23 46 46 H 1.08000 * 119.90104 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 16 4.3575 -1.2177 2.5521 7 8 5.7139 -1.2019 2.1288 8 8 3.8866 -0.3075 3.5364 9 6 3.8335 -2.9090 2.9465 10 6 4.5644 -3.3897 4.2018 11 6 4.1286 -4.7946 4.5298 12 1 3.4033 -5.2947 3.9052 13 6 4.6559 -5.4414 5.6273 14 7 5.5396 -4.8326 6.3877 15 14 4.1153 -7.1825 6.0343 16 1 3.1192 -7.6387 5.0317 17 1 5.2938 -8.0856 6.0083 18 1 3.5025 -7.2072 7.3867 19 7 2.0196 -0.6925 -1.1995 20 6 1.7481 0.1011 -2.4177 21 6 0.4065 -0.4869 -2.9120 22 6 0.4228 -1.8903 -2.3397 23 6 -0.3180 -3.0124 -2.6468 24 6 -0.1003 -4.1951 -1.9637 25 6 0.8691 -4.2537 -0.9790 26 6 1.6148 -3.1354 -0.6703 27 6 1.3967 -1.9377 -1.3494 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 3.9646 -0.6669 0.3540 34 1 2.7582 -2.9242 3.1244 35 1 4.0729 -3.5676 2.1117 36 1 5.6397 -3.3745 4.0244 37 1 4.3245 -2.7310 5.0365 38 1 5.9109 -5.2878 7.1596 39 1 1.6409 1.1582 -2.1746 40 1 2.5326 -0.0486 -3.1595 41 1 -0.4341 0.0822 -2.5148 42 1 0.3751 -0.5145 -4.0012 43 1 -1.0722 -2.9662 -3.4184 44 1 -0.6830 -5.0726 -2.2020 45 1 1.0431 -5.1790 -0.4499 46 1 2.3700 -3.1877 0.1000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171979999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:15 Heat of formation + Delta-G solvation = -59.459786 kcal Electronic energy + Delta-G solvation = -27953.246255 eV Core-core repulsion = 24161.936882 eV Total energy + Delta-G solvation = -3791.309373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.13965 -38.31207 -38.07739 -37.00574 -36.34175 -35.88861 -33.21263 -33.12046 -31.91347 -30.04209 -29.35245 -27.58576 -26.60244 -23.92138 -23.62166 -23.31812 -22.08971 -21.02688 -20.23384 -19.05674 -18.31475 -17.89714 -17.26241 -16.97594 -16.79578 -16.62314 -16.51618 -16.25457 -16.01173 -15.39794 -15.06532 -14.54224 -14.47262 -14.32667 -14.02248 -13.78414 -13.68530 -13.41076 -13.36187 -13.18731 -13.15501 -13.08516 -13.02723 -12.95085 -12.78424 -12.66581 -12.42445 -12.25874 -12.11389 -12.06924 -11.72471 -11.66793 -11.54515 -11.15971 -10.65059 -10.38445 -10.24968 -9.65847 -8.79052 -8.25523 -6.39188 -0.64643 0.43108 0.50686 1.40818 1.41425 1.54673 1.88189 2.38209 2.67606 2.82682 2.87929 3.08028 3.27736 3.63306 3.77037 3.91340 3.92273 4.04304 4.12581 4.16965 4.23862 4.28245 4.32893 4.44665 4.51253 4.58978 4.63910 4.70272 4.74023 4.79537 4.85796 4.90773 4.99626 5.07112 5.10235 5.24096 5.27858 5.28897 5.33458 5.53293 5.58662 5.67334 5.69224 5.87422 6.03473 6.07101 6.23250 6.38871 6.74472 7.30822 8.87055 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.003521 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.807673 B = 7950.614116 C = 9578.438075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.082 3.918 3 H 0.110 0.890 4 C 0.110 3.890 5 N -1.097 6.097 6 S 2.621 3.379 7 O -1.001 7.001 8 O -0.997 6.997 9 C -0.588 4.588 10 C 0.021 3.979 11 C -0.536 4.536 12 H 0.075 0.925 13 C -0.004 4.004 14 N -0.934 5.934 15 Si 0.973 3.027 16 H -0.255 1.255 17 H -0.279 1.279 18 H -0.278 1.278 19 N -0.499 5.499 20 C 0.048 3.952 21 C -0.105 4.105 22 C -0.144 4.144 23 C -0.098 4.098 24 C -0.136 4.136 25 C -0.117 4.117 26 C -0.133 4.133 27 C 0.085 3.915 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.427 0.573 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.005 0.995 37 H 0.007 0.993 38 H 0.267 0.733 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.131 0.869 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.283 8.478 -22.453 29.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.025 4.025 3 H 0.128 0.872 4 C -0.017 4.017 5 N -0.860 5.860 6 S 2.717 3.283 7 O -0.991 6.991 8 O -0.987 6.987 9 C -0.720 4.720 10 C -0.018 4.018 11 C -0.575 4.575 12 H 0.094 0.906 13 C -0.202 4.202 14 N -0.574 5.574 15 Si 0.797 3.203 16 H -0.179 1.179 17 H -0.204 1.204 18 H -0.203 1.203 19 N -0.217 5.217 20 C -0.078 4.078 21 C -0.143 4.143 22 C -0.147 4.147 23 C -0.116 4.116 24 C -0.155 4.155 25 C -0.136 4.136 26 C -0.153 4.153 27 C -0.011 4.011 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.264 0.736 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.023 0.977 37 H 0.026 0.974 38 H 0.076 0.924 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.149 0.851 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.071 9.045 -21.617 27.861 hybrid contribution -0.573 -1.397 0.228 1.528 sum -15.645 7.648 -21.389 27.581 Atomic orbital electron populations 1.22580 0.94643 1.02783 1.04133 1.22043 0.94460 0.98310 0.87696 0.87164 1.21670 0.78850 1.01627 0.99538 1.55104 1.16062 1.87070 1.27761 1.04391 0.73084 0.77495 0.73333 1.93499 1.35887 1.88142 1.81577 1.93492 1.82062 1.61588 1.61567 1.30349 1.11815 1.21531 1.08354 1.18814 0.94613 0.97889 0.90454 1.21531 1.25266 0.99151 1.11530 0.90644 1.26112 0.94870 1.03273 0.95986 1.70113 1.30311 1.39720 1.17269 0.85275 0.78419 0.78208 0.78414 1.17893 1.20427 1.20341 1.60255 1.55875 1.01256 1.04322 1.23266 0.96181 0.98182 0.90195 1.21854 0.99187 0.91066 1.02199 1.21269 0.96515 0.96844 1.00063 1.20670 0.99474 0.91507 0.99974 1.21319 0.98874 0.98691 0.96589 1.21187 0.96061 0.98196 0.98145 1.20779 1.01358 0.91669 1.01500 1.19509 0.93427 0.91292 0.96843 0.89863 0.92927 0.90707 0.89580 0.91262 0.73559 0.84208 0.84263 0.97651 0.97448 0.92424 0.87709 0.89183 0.88565 0.88632 0.84396 0.84116 0.85149 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 7.96 71.98 0.57 -1.89 16 2 C 0.08 1.34 2.45 44.92 0.11 1.45 16 3 H 0.11 1.54 7.85 -2.39 -0.02 1.52 16 4 C 0.11 2.38 5.17 86.38 0.45 2.83 16 5 N -1.10 -28.50 5.80 -187.50 -1.09 -29.58 16 6 S 2.62 95.89 5.46 -56.49 -0.31 95.58 16 7 O -1.00 -43.34 18.08 -127.65 -2.31 -45.65 16 8 O -1.00 -42.17 17.50 -127.65 -2.23 -44.40 16 9 C -0.59 -22.67 6.01 71.98 0.43 -22.24 16 10 C 0.02 1.12 4.98 29.85 0.15 1.27 16 11 C -0.54 -29.90 9.11 25.60 0.23 -29.66 16 12 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 13 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 14 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 15 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 16 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 19 N -0.50 -8.59 4.32 -664.87 -2.87 -11.46 16 20 C 0.05 0.56 6.71 86.65 0.58 1.14 16 21 C -0.11 -1.11 6.19 30.67 0.19 -0.92 16 22 C -0.14 -2.36 5.39 -19.49 -0.11 -2.46 16 23 C -0.10 -1.52 10.03 22.21 0.22 -1.30 16 24 C -0.14 -2.29 10.06 22.30 0.22 -2.07 16 25 C -0.12 -2.38 10.02 22.21 0.22 -2.15 16 26 C -0.13 -2.98 8.55 22.47 0.19 -2.79 16 27 C 0.09 1.68 4.06 38.29 0.16 1.83 16 28 H 0.08 0.84 5.24 -2.39 -0.01 0.83 16 29 H 0.05 0.88 6.68 -2.39 -0.02 0.86 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.89 7.69 -2.38 -0.02 1.87 16 32 H 0.07 1.48 5.94 -2.38 -0.01 1.46 16 33 H 0.43 10.17 8.05 -96.75 -0.78 9.39 16 34 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 35 H 0.14 4.78 8.14 -2.39 -0.02 4.77 16 36 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.10 0.81 7.60 -2.39 -0.02 0.79 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.10 0.80 6.06 -2.38 -0.01 0.79 16 42 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 46 H 0.12 2.76 7.26 -2.91 -0.02 2.73 16 Total: -1.00 -77.36 377.02 -2.20 -79.56 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.21 Total: 24.13 kcal Atomic # 6 Polarization: -60.83 SS G_CDS: 4.09 Total: -56.74 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -3.68 Total: -98.06 kcal Atomic # 8 Polarization: -85.51 SS G_CDS: -4.54 Total: -90.05 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 95.89 SS G_CDS: -0.31 Total: 95.58 kcal Total: -77.36 -2.20 -79.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171979999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.104 kcal (2) G-P(sol) polarization free energy of solvation -77.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds