Wall clock time and date at job start Tue Mar 31 2020 21:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47432 * 2 1 4 4 C 1.52997 * 109.47514 * 120.00346 * 2 1 3 5 5 S 1.81397 * 109.47527 * 184.99811 * 4 2 1 6 6 C 1.81404 * 103.00143 * 179.97438 * 5 4 2 7 7 O 1.42100 * 109.46829 * 63.61504 * 5 4 2 8 8 N 1.46502 * 109.47323 * 240.00211 * 2 1 3 9 9 C 1.34773 * 119.99941 * 84.99303 * 8 2 1 10 10 O 1.21591 * 120.00306 * 0.02562 * 9 8 2 11 11 N 1.34776 * 120.00151 * 180.02562 * 9 8 2 12 12 C 1.46504 * 120.00316 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47011 * 35.00083 * 12 11 9 14 14 C 1.52999 * 109.47359 * 154.99637 * 12 11 9 15 15 C 1.50700 * 109.47276 * 295.00435 * 14 12 11 16 16 H 1.08004 * 120.00114 * 359.97438 * 15 14 12 17 17 C 1.37873 * 119.99778 * 179.97438 * 15 14 12 18 18 N 1.31515 * 120.00506 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99974 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46738 * 60.00343 * 19 17 15 21 21 H 1.48493 * 109.47182 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47270 * 300.00368 * 19 17 15 23 23 C 1.50691 * 109.46928 * 275.00310 * 12 11 9 24 24 C 1.38239 * 120.00161 * 319.71752 * 23 12 11 25 25 C 1.38231 * 120.00241 * 179.79246 * 24 23 12 26 26 C 1.38236 * 119.99664 * 0.44395 * 25 24 23 27 27 C 1.38230 * 120.00270 * 359.81365 * 26 25 24 28 28 C 1.38232 * 120.00188 * 139.99939 * 23 12 11 29 29 H 1.09007 * 109.47421 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47139 * 299.99533 * 1 2 3 31 31 H 1.09000 * 109.47197 * 59.99799 * 1 2 3 32 32 H 1.09007 * 109.47172 * 64.99871 * 4 2 1 33 33 H 1.09007 * 109.46944 * 305.00356 * 4 2 1 34 34 H 1.09002 * 109.47124 * 60.00087 * 6 5 4 35 35 H 1.09001 * 109.46975 * 300.00209 * 6 5 4 36 36 H 1.09004 * 109.47147 * 180.02562 * 6 5 4 37 37 H 0.96997 * 119.99952 * 265.00563 * 8 2 1 38 38 H 0.97004 * 120.00039 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.46745 * 55.00096 * 14 12 11 40 40 H 1.09000 * 109.46932 * 175.00065 * 14 12 11 41 41 H 0.96997 * 120.00184 * 179.97438 * 18 17 15 42 42 H 1.08000 * 119.99405 * 0.02562 * 24 23 12 43 43 H 1.08000 * 120.00312 * 180.28021 * 25 24 23 44 44 H 1.08000 * 119.99791 * 179.83599 * 26 25 24 45 45 H 1.08004 * 119.99824 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.00340 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 16 3.8479 -0.5933 1.3255 6 6 4.2566 -1.4918 2.8475 7 8 4.2206 0.7706 1.4668 8 7 2.0183 -0.6906 -1.1962 9 6 2.1469 -0.0182 -2.3571 10 8 1.8581 1.1616 -2.4117 11 7 2.5957 -0.6536 -3.4577 12 6 2.7361 0.0774 -4.7196 13 1 3.0475 1.1015 -4.5136 14 6 3.7880 -0.6095 -5.5927 15 6 5.1355 -0.5141 -4.9247 16 1 5.2320 -0.0132 -3.9727 17 6 6.2450 -1.0663 -5.5287 18 7 6.1275 -1.6767 -6.6877 19 14 7.9155 -0.9474 -4.7010 20 1 7.8595 -1.6143 -3.3753 21 1 8.9362 -1.6153 -5.5478 22 1 8.2784 0.4813 -4.5214 23 6 1.4138 0.0902 -5.4423 24 6 0.6217 -1.0426 -5.4545 25 6 -0.5932 -1.0295 -6.1138 26 6 -1.0117 0.1136 -6.7688 27 6 -0.2172 1.2447 -6.7612 28 6 0.9957 1.2330 -6.0981 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.7517 -1.7716 1.2055 33 1 1.6053 -0.2618 2.1369 34 1 3.9128 -2.5228 2.7642 35 1 3.7665 -1.0127 3.6950 36 1 5.3362 -1.4795 2.9979 37 1 2.2489 -1.6317 -1.1527 38 1 2.8258 -1.5949 -3.4144 39 1 3.5217 -1.6582 -5.7252 40 1 3.8292 -0.1194 -6.5654 41 1 6.9082 -2.0648 -7.1128 42 1 0.9504 -1.9367 -4.9456 43 1 -1.2141 -1.9132 -6.1195 44 1 -1.9597 0.1230 -7.2862 45 1 -0.5441 2.1377 -7.2734 46 1 1.6163 2.1168 -6.0922 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183033931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:46 Heat of formation + Delta-G solvation = -50.538540 kcal Electronic energy + Delta-G solvation = -27384.226623 eV Core-core repulsion = 23593.304104 eV Total energy + Delta-G solvation = -3790.922519 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.85954 -38.66466 -36.25707 -35.78198 -34.84128 -32.74961 -31.82213 -30.49357 -30.09180 -29.18046 -28.59460 -27.48957 -24.86981 -22.30021 -22.05811 -21.80102 -20.51303 -19.75717 -18.17743 -17.52572 -16.80304 -16.27608 -16.07948 -15.65771 -15.07438 -14.99253 -14.85256 -14.52458 -14.38043 -14.21297 -13.80982 -13.56752 -13.19534 -13.05494 -12.96887 -12.86049 -12.78402 -12.51087 -12.40970 -12.10042 -12.06030 -11.79089 -11.48300 -11.12618 -11.08705 -10.87736 -10.68181 -10.59488 -10.40225 -10.26049 -9.73323 -9.64998 -9.26165 -9.00376 -8.49275 -8.41933 -8.36362 -8.25164 -8.12585 -6.05329 -4.08416 1.32782 1.82988 1.85442 2.46311 3.07820 3.31457 3.37105 3.41045 3.65048 3.72824 4.25320 4.43290 4.50309 4.72156 4.87357 4.88160 5.01675 5.19599 5.30612 5.31407 5.32227 5.37846 5.42263 5.47897 5.59719 5.65665 5.67550 5.95345 5.96366 5.99469 6.17388 6.21641 6.40972 6.47722 6.63341 6.71281 6.89097 6.90498 7.00596 7.15445 7.34360 7.45832 7.55738 7.72012 7.91940 8.30226 8.55295 8.97766 9.13282 9.56548 11.05104 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007239 B = 0.004738 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3866.857007 B = 5908.752545 C = 9138.364708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.185 3.815 3 H 0.092 0.908 4 C -0.461 4.461 5 S 1.253 4.747 6 C -0.498 4.498 7 O -0.840 6.840 8 N -0.753 5.753 9 C 0.704 3.296 10 O -0.593 6.593 11 N -0.715 5.715 12 C 0.201 3.799 13 H 0.087 0.913 14 C 0.024 3.976 15 C -0.518 4.518 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.893 5.893 19 Si 0.890 3.110 20 H -0.275 1.275 21 H -0.289 1.289 22 H -0.277 1.277 23 C -0.070 4.070 24 C -0.106 4.106 25 C -0.127 4.127 26 C -0.136 4.136 27 C -0.124 4.124 28 C -0.108 4.108 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.396 0.604 38 H 0.397 0.603 39 H 0.025 0.975 40 H 0.034 0.966 41 H 0.262 0.738 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.327 -5.573 11.639 17.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.078 3.922 3 H 0.110 0.890 4 C -0.598 4.598 5 S 1.450 4.550 6 C -0.655 4.655 7 O -0.835 6.835 8 N -0.411 5.411 9 C 0.404 3.596 10 O -0.471 6.471 11 N -0.368 5.368 12 C 0.096 3.904 13 H 0.105 0.895 14 C -0.013 4.013 15 C -0.557 4.557 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.071 4.071 24 C -0.124 4.124 25 C -0.145 4.145 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.126 4.126 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.117 0.883 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.123 0.877 37 H 0.230 0.770 38 H 0.232 0.768 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.836 -4.095 10.830 15.858 hybrid contribution 0.148 -0.077 2.294 2.300 sum -10.688 -4.172 13.123 17.431 Atomic orbital electron populations 1.22167 0.95001 1.01991 1.02454 1.20153 0.94298 0.96803 0.80927 0.88996 1.28017 1.21750 1.07316 1.02759 1.71144 0.87483 0.95747 1.00604 1.27738 1.08509 1.11254 1.17992 1.93171 1.75560 1.32649 1.82163 1.45268 1.73128 1.13628 1.09085 1.15989 0.78270 0.85122 0.80251 1.90895 1.57229 1.14429 1.84538 1.45130 1.69107 1.13891 1.08632 1.20126 0.90840 0.97773 0.81624 0.89533 1.19395 0.91472 0.95903 0.94557 1.21116 0.92181 1.36254 1.06116 0.92271 1.24975 0.99008 0.95237 0.94856 1.69949 1.30196 1.37079 1.15974 0.86690 0.83740 0.78433 0.79355 1.20087 1.21440 1.20242 1.20605 0.96740 0.93153 0.96594 1.20883 0.94248 0.97929 0.99368 1.21027 0.96748 0.97867 0.98818 1.20977 0.99711 0.93797 1.00959 1.21035 0.95046 0.98065 1.00022 1.21028 0.96084 0.97965 0.97566 0.92419 0.92322 0.91485 0.85944 0.88293 0.86974 0.90414 0.87678 0.77021 0.76848 0.95702 0.94775 0.92880 0.86578 0.86876 0.86977 0.86714 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.48 37.15 0.35 -1.35 16 2 C 0.18 2.19 2.57 -67.93 -0.17 2.01 16 3 H 0.09 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.46 -3.72 5.44 37.16 0.20 -3.51 16 5 S 1.25 12.13 13.53 -107.50 -1.45 10.68 16 6 C -0.50 -3.55 10.74 101.05 1.09 -2.46 16 7 O -0.84 -14.55 18.14 -35.23 -0.64 -15.19 16 8 N -0.75 -9.11 4.79 -58.68 -0.28 -9.39 16 9 C 0.70 12.06 8.49 -86.92 -0.74 11.32 16 10 O -0.59 -12.76 15.67 5.29 0.08 -12.68 16 11 N -0.72 -12.16 4.05 -59.81 -0.24 -12.40 16 12 C 0.20 4.01 2.11 -69.09 -0.15 3.87 16 13 H 0.09 1.94 7.44 -51.93 -0.39 1.55 16 14 C 0.02 0.56 4.49 -27.88 -0.13 0.44 16 15 C -0.52 -13.32 8.84 -34.44 -0.30 -13.62 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -25.04 13.29 55.43 0.74 -24.31 16 19 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.07 -1.27 4.91 -104.63 -0.51 -1.79 16 24 C -0.11 -1.74 9.32 -39.58 -0.37 -2.10 16 25 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 26 C -0.14 -1.94 10.05 -39.59 -0.40 -2.34 16 27 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 28 C -0.11 -1.89 9.67 -39.58 -0.38 -2.27 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.12 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 34 H 0.11 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.40 3.20 8.62 -40.82 -0.35 2.85 16 38 H 0.40 5.85 8.62 -40.82 -0.35 5.50 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.12 1.74 7.73 -52.49 -0.41 1.33 16 43 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 46 H 0.12 2.04 8.04 -52.49 -0.42 1.61 16 LS Contribution 401.65 15.07 6.05 6.05 Total: -1.00 -37.13 401.65 -10.52 -47.65 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.35 Total: 8.86 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.40 Total: -14.82 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.21 Total: -46.10 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.56 Total: -27.87 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 12.13 SS G_CDS: -1.45 Total: 10.68 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.13 -10.52 -47.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183033931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.891 kcal (2) G-P(sol) polarization free energy of solvation -37.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds