Wall clock time and date at job start Tue Mar 31 2020 21:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47432 * 2 1 4 4 C 1.52997 * 109.47514 * 120.00346 * 2 1 3 5 5 S 1.81397 * 109.47527 * 184.99811 * 4 2 1 6 6 C 1.81404 * 103.00143 * 179.97438 * 5 4 2 7 7 O 1.42100 * 109.46829 * 63.61504 * 5 4 2 8 8 N 1.46502 * 109.47323 * 240.00211 * 2 1 3 9 9 C 1.34773 * 119.99941 * 84.99303 * 8 2 1 10 10 O 1.21591 * 120.00306 * 0.02562 * 9 8 2 11 11 N 1.34776 * 120.00151 * 180.02562 * 9 8 2 12 12 C 1.46504 * 120.00316 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47011 * 35.00083 * 12 11 9 14 14 C 1.52999 * 109.47359 * 154.99637 * 12 11 9 15 15 C 1.50700 * 109.47276 * 295.00435 * 14 12 11 16 16 H 1.08004 * 120.00114 * 359.97438 * 15 14 12 17 17 C 1.37873 * 119.99778 * 179.97438 * 15 14 12 18 18 N 1.31515 * 120.00506 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99974 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46738 * 60.00343 * 19 17 15 21 21 H 1.48493 * 109.47182 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47270 * 300.00368 * 19 17 15 23 23 C 1.50691 * 109.46928 * 275.00310 * 12 11 9 24 24 C 1.38239 * 120.00161 * 319.71752 * 23 12 11 25 25 C 1.38231 * 120.00241 * 179.79246 * 24 23 12 26 26 C 1.38236 * 119.99664 * 0.44395 * 25 24 23 27 27 C 1.38230 * 120.00270 * 359.81365 * 26 25 24 28 28 C 1.38232 * 120.00188 * 139.99939 * 23 12 11 29 29 H 1.09007 * 109.47421 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47139 * 299.99533 * 1 2 3 31 31 H 1.09000 * 109.47197 * 59.99799 * 1 2 3 32 32 H 1.09007 * 109.47172 * 64.99871 * 4 2 1 33 33 H 1.09007 * 109.46944 * 305.00356 * 4 2 1 34 34 H 1.09002 * 109.47124 * 60.00087 * 6 5 4 35 35 H 1.09001 * 109.46975 * 300.00209 * 6 5 4 36 36 H 1.09004 * 109.47147 * 180.02562 * 6 5 4 37 37 H 0.96997 * 119.99952 * 265.00563 * 8 2 1 38 38 H 0.97004 * 120.00039 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.46745 * 55.00096 * 14 12 11 40 40 H 1.09000 * 109.46932 * 175.00065 * 14 12 11 41 41 H 0.96997 * 120.00184 * 179.97438 * 18 17 15 42 42 H 1.08000 * 119.99405 * 0.02562 * 24 23 12 43 43 H 1.08000 * 120.00312 * 180.28021 * 25 24 23 44 44 H 1.08000 * 119.99791 * 179.83599 * 26 25 24 45 45 H 1.08004 * 119.99824 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.00340 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 16 3.8479 -0.5933 1.3255 6 6 4.2566 -1.4918 2.8475 7 8 4.2206 0.7706 1.4668 8 7 2.0183 -0.6906 -1.1962 9 6 2.1469 -0.0182 -2.3571 10 8 1.8581 1.1616 -2.4117 11 7 2.5957 -0.6536 -3.4577 12 6 2.7361 0.0774 -4.7196 13 1 3.0475 1.1015 -4.5136 14 6 3.7880 -0.6095 -5.5927 15 6 5.1355 -0.5141 -4.9247 16 1 5.2320 -0.0132 -3.9727 17 6 6.2450 -1.0663 -5.5287 18 7 6.1275 -1.6767 -6.6877 19 14 7.9155 -0.9474 -4.7010 20 1 7.8595 -1.6143 -3.3753 21 1 8.9362 -1.6153 -5.5478 22 1 8.2784 0.4813 -4.5214 23 6 1.4138 0.0902 -5.4423 24 6 0.6217 -1.0426 -5.4545 25 6 -0.5932 -1.0295 -6.1138 26 6 -1.0117 0.1136 -6.7688 27 6 -0.2172 1.2447 -6.7612 28 6 0.9957 1.2330 -6.0981 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.7517 -1.7716 1.2055 33 1 1.6053 -0.2618 2.1369 34 1 3.9128 -2.5228 2.7642 35 1 3.7665 -1.0127 3.6950 36 1 5.3362 -1.4795 2.9979 37 1 2.2489 -1.6317 -1.1527 38 1 2.8258 -1.5949 -3.4144 39 1 3.5217 -1.6582 -5.7252 40 1 3.8292 -0.1194 -6.5654 41 1 6.9082 -2.0648 -7.1128 42 1 0.9504 -1.9367 -4.9456 43 1 -1.2141 -1.9132 -6.1195 44 1 -1.9597 0.1230 -7.2862 45 1 -0.5441 2.1377 -7.2734 46 1 1.6163 2.1168 -6.0922 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183033931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:45 Heat of formation + Delta-G solvation = -77.712684 kcal Electronic energy + Delta-G solvation = -27385.404982 eV Core-core repulsion = 23593.304104 eV Total energy + Delta-G solvation = -3792.100878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22945 -39.91684 -37.45773 -36.83436 -36.36218 -34.65944 -33.16329 -31.70666 -31.26163 -30.36137 -29.79490 -28.28492 -26.61552 -23.74243 -23.48691 -22.97542 -21.71985 -21.21064 -19.47546 -18.57717 -18.38025 -17.69506 -17.37791 -16.58448 -16.48062 -16.23183 -16.19587 -15.92324 -15.56379 -15.28371 -14.91212 -14.87054 -14.42188 -14.15474 -14.13092 -14.09091 -13.79890 -13.60242 -13.53881 -13.44851 -13.29617 -12.94498 -12.83430 -12.65438 -12.59076 -12.36716 -12.09798 -12.03227 -11.81055 -11.50746 -11.26044 -11.19847 -11.14182 -10.50216 -10.26910 -9.72849 -9.66295 -9.45182 -9.15342 -8.12294 -6.21605 0.56864 0.57917 0.61853 1.45913 1.49045 1.56107 1.76915 1.85321 2.33748 2.47310 2.85492 3.01404 3.21409 3.51078 3.68455 4.07026 4.09963 4.11087 4.26157 4.27510 4.30837 4.37422 4.49421 4.52246 4.55665 4.72380 4.75889 4.81112 4.83408 4.86539 5.04719 5.13950 5.18741 5.25966 5.27152 5.38930 5.52244 5.61354 5.66881 5.68824 5.71441 5.86383 5.98220 6.22997 6.24491 6.29914 6.90818 7.32989 7.47479 7.78988 8.98007 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007239 B = 0.004738 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3866.857007 B = 5908.752545 C = 9138.364708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.181 3.819 3 H 0.042 0.958 4 C -0.441 4.441 5 S 1.251 4.749 6 C -0.481 4.481 7 O -0.931 6.931 8 N -0.730 5.730 9 C 0.701 3.299 10 O -0.642 6.642 11 N -0.708 5.708 12 C 0.218 3.782 13 H 0.050 0.950 14 C 0.039 3.961 15 C -0.526 4.526 16 H 0.053 0.947 17 C 0.015 3.985 18 N -0.925 5.925 19 Si 0.948 3.052 20 H -0.255 1.255 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.095 4.095 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.132 4.132 27 C -0.127 4.127 28 C -0.137 4.137 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.177 0.823 33 H 0.108 0.892 34 H 0.155 0.845 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.419 0.581 38 H 0.410 0.590 39 H 0.019 0.981 40 H 0.001 0.999 41 H 0.263 0.737 42 H 0.128 0.872 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.139 0.861 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.174 -8.766 13.241 20.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.074 3.926 3 H 0.061 0.939 4 C -0.579 4.579 5 S 1.453 4.547 6 C -0.640 4.640 7 O -0.926 6.926 8 N -0.389 5.389 9 C 0.401 3.599 10 O -0.523 6.523 11 N -0.362 5.362 12 C 0.112 3.888 13 H 0.068 0.932 14 C 0.002 3.998 15 C -0.564 4.564 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.565 5.565 19 Si 0.774 3.226 20 H -0.179 1.179 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.097 4.097 24 C -0.134 4.134 25 C -0.142 4.142 26 C -0.149 4.149 27 C -0.145 4.145 28 C -0.155 4.155 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.194 0.806 33 H 0.126 0.874 34 H 0.173 0.827 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.258 0.742 38 H 0.246 0.754 39 H 0.037 0.963 40 H 0.019 0.981 41 H 0.072 0.928 42 H 0.145 0.855 43 H 0.166 0.834 44 H 0.167 0.833 45 H 0.157 0.843 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.669 -7.330 12.456 19.220 hybrid contribution 0.622 0.865 1.827 2.115 sum -12.047 -6.466 14.283 19.773 Atomic orbital electron populations 1.22108 0.93698 1.03638 1.01507 1.20181 0.95273 0.95030 0.82103 0.93940 1.27826 1.19261 1.10100 1.00753 1.70001 0.88527 0.93494 1.02694 1.27571 1.08681 1.12640 1.15120 1.93070 1.78280 1.36422 1.84869 1.45014 1.71872 1.14538 1.07485 1.16138 0.77931 0.84592 0.81205 1.90865 1.59207 1.16859 1.85406 1.44858 1.69205 1.14195 1.07914 1.19548 0.91328 0.95485 0.82451 0.93222 1.19131 0.91900 0.95313 0.93488 1.21359 0.93441 1.35675 1.05925 0.92868 1.25702 1.02418 0.94926 0.95353 1.70058 1.31162 1.38063 1.17253 0.85761 0.79538 0.77981 0.79356 1.17916 1.21040 1.21034 1.20493 0.96501 0.94714 0.97956 1.21081 0.94923 0.97459 0.99936 1.21448 0.96068 0.99277 0.97415 1.21446 1.00621 0.92895 0.99982 1.21351 0.94016 0.99742 0.99377 1.21166 0.97607 0.97701 0.99074 0.89314 0.91004 0.94807 0.80570 0.87376 0.82658 0.90764 0.87696 0.74229 0.75396 0.96252 0.98091 0.92819 0.85455 0.83432 0.83322 0.84302 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.48 71.98 0.68 -2.34 16 2 C 0.18 4.15 2.57 44.99 0.12 4.27 16 3 H 0.04 1.43 7.58 -2.39 -0.02 1.41 16 4 C -0.44 -5.80 5.44 71.98 0.39 -5.41 16 5 S 1.25 23.01 13.53 -56.49 -0.76 22.24 16 6 C -0.48 -5.28 10.74 113.37 1.22 -4.06 16 7 O -0.93 -34.00 18.14 -148.98 -2.70 -36.70 16 8 N -0.73 -17.09 4.79 -457.83 -2.19 -19.28 16 9 C 0.70 24.86 8.49 179.06 1.52 26.38 16 10 O -0.64 -29.51 15.67 -4.00 -0.06 -29.58 16 11 N -0.71 -24.84 4.05 -461.41 -1.87 -26.70 16 12 C 0.22 9.25 2.11 44.24 0.09 9.35 16 13 H 0.05 2.44 7.44 -2.39 -0.02 2.43 16 14 C 0.04 1.92 4.49 29.85 0.13 2.06 16 15 C -0.53 -27.96 8.84 25.60 0.23 -27.73 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 17 C 0.01 0.80 5.46 84.65 0.46 1.26 16 18 N -0.93 -52.89 13.29 21.45 0.28 -52.61 16 19 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 20 H -0.25 -10.53 7.11 99.48 0.71 -9.83 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 C -0.10 -3.64 4.91 -19.87 -0.10 -3.73 16 24 C -0.12 -3.72 9.32 22.27 0.21 -3.51 16 25 C -0.12 -3.31 10.05 22.27 0.22 -3.09 16 26 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 27 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 28 C -0.14 -5.04 9.67 22.27 0.22 -4.83 16 29 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.18 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.11 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.16 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.42 5.70 8.62 -92.71 -0.80 4.90 16 38 H 0.41 12.03 8.62 -92.70 -0.80 11.23 16 39 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.13 3.66 7.73 -2.91 -0.02 3.64 16 43 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 44 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 45 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 46 H 0.11 4.03 8.04 -2.91 -0.02 4.01 16 Total: -1.00 -88.64 401.65 -0.05 -88.70 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.62 Total: 27.52 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 5.84 Total: -18.12 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -3.77 Total: -98.59 kcal Atomic # 8 Polarization: -63.51 SS G_CDS: -2.76 Total: -66.28 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 23.01 SS G_CDS: -0.76 Total: 22.24 kcal Total: -88.64 -0.05 -88.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183033931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.982 kcal (2) G-P(sol) polarization free energy of solvation -88.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds