Wall clock time and date at job start Tue Mar 31 2020 21:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 S 1.81396 * 109.47360 * 180.02562 * 4 2 1 6 6 C 1.81405 * 103.00203 * 180.02562 * 5 4 2 7 7 O 1.42096 * 109.47011 * 63.61221 * 5 4 2 8 8 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 9 9 C 1.34779 * 119.99793 * 274.99565 * 8 2 1 10 10 O 1.21578 * 120.00118 * 0.02562 * 9 8 2 11 11 N 1.34778 * 119.99594 * 179.97438 * 9 8 2 12 12 C 1.46498 * 119.99664 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47249 * 35.00561 * 12 11 9 14 14 C 1.52996 * 109.47072 * 155.00636 * 12 11 9 15 15 C 1.50709 * 109.47039 * 295.00102 * 14 12 11 16 16 H 1.07992 * 119.99439 * 359.97438 * 15 14 12 17 17 C 1.37871 * 119.99919 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99886 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00287 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46783 * 90.00102 * 19 17 15 21 21 H 1.48502 * 109.47107 * 210.00042 * 19 17 15 22 22 H 1.48498 * 109.47286 * 330.00106 * 19 17 15 23 23 C 1.50707 * 109.47202 * 275.00595 * 12 11 9 24 24 C 1.38236 * 119.99668 * 319.72307 * 23 12 11 25 25 C 1.38243 * 119.99519 * 179.81129 * 24 23 12 26 26 C 1.38235 * 119.99861 * 0.40134 * 25 24 23 27 27 C 1.38234 * 120.00000 * 359.85388 * 26 25 24 28 28 C 1.38230 * 119.99675 * 140.00385 * 23 12 11 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 4 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 4 2 1 34 34 H 1.08992 * 109.46981 * 59.99525 * 6 5 4 35 35 H 1.08996 * 109.46998 * 180.02562 * 6 5 4 36 36 H 1.09001 * 109.46692 * 299.99877 * 6 5 4 37 37 H 0.97004 * 120.00223 * 94.99655 * 8 2 1 38 38 H 0.96995 * 120.00471 * 0.02562 * 11 9 8 39 39 H 1.08995 * 109.47497 * 54.99839 * 14 12 11 40 40 H 1.09005 * 109.47342 * 174.99862 * 14 12 11 41 41 H 0.96998 * 120.00085 * 179.97438 * 18 17 15 42 42 H 1.07996 * 120.00337 * 0.02562 * 24 23 12 43 43 H 1.07993 * 119.99519 * 180.23114 * 25 24 23 44 44 H 1.08001 * 119.99565 * 179.83343 * 26 25 24 45 45 H 1.08007 * 119.99587 * 179.97438 * 27 26 25 46 46 H 1.07994 * 120.00897 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 3.8539 -0.7220 -1.2489 6 6 4.2620 -1.6050 -2.7801 7 8 4.3271 -1.4639 -0.1332 8 7 2.0183 -0.6906 1.1962 9 6 2.1471 -0.0182 2.3571 10 8 1.8576 1.1613 2.4118 11 7 2.5958 -0.6538 3.4577 12 6 2.7364 0.0772 4.7195 13 1 1.9404 0.8174 4.8011 14 6 2.6430 -0.9034 5.8901 15 6 1.2627 -1.5072 5.9307 16 1 0.5259 -1.2199 5.1953 17 6 0.9405 -2.4256 6.9072 18 7 -0.2641 -2.9522 6.9429 19 14 2.2149 -2.9221 8.1796 20 1 2.1234 -2.0151 9.3518 21 1 1.9624 -4.3195 8.6140 22 1 3.5721 -2.8263 7.5844 23 6 4.0734 0.7718 4.7514 24 6 5.1974 0.1302 4.2657 25 6 6.4232 0.7688 4.2915 26 6 6.5264 2.0458 4.8106 27 6 5.4033 2.6854 5.3011 28 6 4.1769 2.0483 5.2718 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6766 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.8434 -1.0685 -3.6314 35 1 5.3450 -1.6672 -2.8860 36 1 3.8427 -2.6105 -2.7423 37 1 2.2490 -1.6318 1.1526 38 1 2.8265 -1.5949 3.4142 39 1 3.3818 -1.6943 5.7614 40 1 2.8358 -0.3745 6.8235 41 1 -0.4907 -3.5986 7.6297 42 1 5.1172 -0.8687 3.8629 43 1 7.3005 0.2689 3.9086 44 1 7.4845 2.5437 4.8331 45 1 5.4841 3.6830 5.7071 46 1 3.2996 2.5480 5.6551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183033957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:49 Heat of formation + Delta-G solvation = -45.405657 kcal Electronic energy + Delta-G solvation = -27673.092419 eV Core-core repulsion = 23882.392478 eV Total energy + Delta-G solvation = -3790.699941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.80014 -38.66806 -36.25646 -35.73830 -34.81967 -32.63470 -31.77534 -30.50661 -30.06260 -29.25278 -29.04684 -27.43996 -24.93277 -22.29913 -21.82644 -21.67133 -20.39237 -19.70112 -18.00739 -17.60701 -17.04040 -16.41027 -16.05580 -15.67411 -15.14147 -14.89316 -14.80631 -14.41890 -14.32251 -14.20655 -13.81612 -13.50719 -13.22093 -13.00257 -12.97865 -12.91894 -12.80737 -12.54585 -12.38263 -12.28325 -12.01917 -11.79883 -11.67010 -11.26841 -11.12543 -10.96297 -10.64479 -10.56267 -10.26188 -10.07753 -9.79851 -9.57498 -9.26761 -8.82208 -8.57677 -8.49757 -8.41611 -8.25745 -8.15122 -6.06386 -4.05264 1.29730 1.79153 1.82784 2.41660 3.19791 3.30151 3.37563 3.41073 3.63218 3.82267 4.23066 4.42762 4.53928 4.74162 4.83030 4.92187 4.97172 5.26160 5.28280 5.28502 5.31133 5.38595 5.42279 5.53597 5.57181 5.61473 5.74391 5.94310 5.94871 5.99394 6.14306 6.31354 6.35576 6.42112 6.53983 6.85008 6.85178 6.87287 6.94294 7.04884 7.15085 7.38109 7.42515 7.59281 7.71432 8.49362 8.62885 9.00358 9.21858 9.54944 11.06543 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009137 B = 0.004120 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.584888 B = 6793.979425 C = 8414.634035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.184 3.816 3 H 0.097 0.903 4 C -0.461 4.461 5 S 1.249 4.751 6 C -0.498 4.498 7 O -0.832 6.832 8 N -0.750 5.750 9 C 0.712 3.288 10 O -0.600 6.600 11 N -0.715 5.715 12 C 0.213 3.787 13 H 0.091 0.909 14 C -0.015 4.015 15 C -0.516 4.516 16 H 0.076 0.924 17 C 0.070 3.930 18 N -0.900 5.900 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.076 4.076 24 C -0.104 4.104 25 C -0.125 4.125 26 C -0.134 4.134 27 C -0.124 4.124 28 C -0.107 4.107 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.398 0.602 38 H 0.397 0.603 39 H 0.023 0.977 40 H 0.030 0.970 41 H 0.263 0.737 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.321 7.735 -19.362 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.077 3.923 3 H 0.115 0.885 4 C -0.598 4.598 5 S 1.445 4.555 6 C -0.655 4.655 7 O -0.827 6.827 8 N -0.408 5.408 9 C 0.412 3.588 10 O -0.480 6.480 11 N -0.366 5.366 12 C 0.108 3.892 13 H 0.109 0.891 14 C -0.053 4.053 15 C -0.554 4.554 16 H 0.094 0.906 17 C -0.132 4.132 18 N -0.539 5.539 19 Si 0.702 3.298 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.190 1.190 23 C -0.077 4.077 24 C -0.122 4.122 25 C -0.144 4.144 26 C -0.152 4.152 27 C -0.142 4.142 28 C -0.126 4.126 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.147 0.853 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.232 0.768 38 H 0.231 0.769 39 H 0.041 0.959 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.565 9.036 -18.525 23.161 hybrid contribution -0.137 -3.544 0.543 3.587 sum 10.428 5.492 -17.982 21.500 Atomic orbital electron populations 1.22193 0.94884 1.02156 1.02653 1.20207 0.94546 0.96564 0.80936 0.88513 1.28064 1.21500 1.06335 1.03926 1.70843 0.86235 1.14014 0.84390 1.27741 1.08371 1.10744 1.18614 1.93173 1.72744 1.73686 1.43133 1.45293 1.72357 1.14055 1.09069 1.15855 0.77795 0.84941 0.80241 1.90848 1.57960 1.14463 1.84715 1.45015 1.69480 1.13593 1.08537 1.19796 0.91955 0.94303 0.83179 0.89072 1.19884 0.98639 0.94181 0.92558 1.21027 0.96064 1.23722 1.14621 0.90621 1.24982 0.95055 0.95780 0.97345 1.69910 1.19460 1.29829 1.34672 0.86857 0.82724 0.77856 0.82345 1.20186 1.21443 1.18955 1.20633 0.96464 0.94278 0.96363 1.20955 0.92139 0.99840 0.99313 1.21043 0.97357 0.95384 1.00571 1.20990 0.98122 0.95529 1.00601 1.21034 0.92910 0.99625 1.00664 1.21024 0.97613 0.94458 0.99472 0.91261 0.91896 0.92741 0.89161 0.85266 0.87225 0.87880 0.90357 0.76796 0.76879 0.95909 0.95211 0.92736 0.86509 0.86812 0.86879 0.86608 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.48 37.16 0.35 -1.53 16 2 C 0.18 2.16 2.63 -67.93 -0.18 1.98 16 3 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 4 C -0.46 -3.47 5.48 37.16 0.20 -3.27 16 5 S 1.25 9.50 13.68 -107.50 -1.47 8.03 16 6 C -0.50 -2.89 10.74 101.05 1.09 -1.80 16 7 O -0.83 -11.90 16.51 -35.23 -0.58 -12.49 16 8 N -0.75 -11.53 4.05 -58.68 -0.24 -11.77 16 9 C 0.71 13.75 8.49 -86.91 -0.74 13.01 16 10 O -0.60 -13.13 15.67 5.30 0.08 -13.05 16 11 N -0.71 -14.16 4.05 -59.81 -0.24 -14.40 16 12 C 0.21 4.49 2.11 -69.08 -0.15 4.34 16 13 H 0.09 2.11 7.44 -51.93 -0.39 1.72 16 14 C -0.01 -0.35 3.56 -27.88 -0.10 -0.45 16 15 C -0.52 -14.35 9.39 -34.44 -0.32 -14.68 16 16 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 17 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 18 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 19 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.26 -6.29 6.54 56.52 0.37 -5.93 16 23 C -0.08 -1.44 4.91 -104.62 -0.51 -1.96 16 24 C -0.10 -1.84 9.32 -39.58 -0.37 -2.21 16 25 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 26 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 27 C -0.12 -1.86 10.05 -39.58 -0.40 -2.25 16 28 C -0.11 -1.86 9.67 -39.58 -0.38 -2.25 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.40 5.96 7.83 -40.82 -0.32 5.64 16 38 H 0.40 7.56 8.62 -40.82 -0.35 7.21 16 39 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 40 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.12 2.05 7.73 -52.49 -0.41 1.64 16 43 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 46 H 0.12 2.01 8.04 -52.49 -0.42 1.58 16 LS Contribution 395.14 15.07 5.95 5.95 Total: -1.00 -37.60 395.14 -10.07 -47.68 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -7.28 Total: 13.66 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -2.40 Total: -13.78 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.29 Total: -52.91 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.50 Total: -25.54 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: 9.50 SS G_CDS: -1.47 Total: 8.03 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.60 -10.07 -47.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183033957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.270 kcal (2) G-P(sol) polarization free energy of solvation -37.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds