Wall clock time and date at job start Tue Mar 31 2020 21:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 S 1.81396 * 109.47360 * 180.02562 * 4 2 1 6 6 C 1.81405 * 103.00203 * 180.02562 * 5 4 2 7 7 O 1.42096 * 109.47011 * 63.61221 * 5 4 2 8 8 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 9 9 C 1.34779 * 119.99793 * 274.99565 * 8 2 1 10 10 O 1.21578 * 120.00118 * 0.02562 * 9 8 2 11 11 N 1.34778 * 119.99594 * 179.97438 * 9 8 2 12 12 C 1.46498 * 119.99664 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47249 * 35.00561 * 12 11 9 14 14 C 1.52996 * 109.47072 * 155.00636 * 12 11 9 15 15 C 1.50709 * 109.47039 * 295.00102 * 14 12 11 16 16 H 1.07992 * 119.99439 * 359.97438 * 15 14 12 17 17 C 1.37871 * 119.99919 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99886 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00287 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46783 * 90.00102 * 19 17 15 21 21 H 1.48502 * 109.47107 * 210.00042 * 19 17 15 22 22 H 1.48498 * 109.47286 * 330.00106 * 19 17 15 23 23 C 1.50707 * 109.47202 * 275.00595 * 12 11 9 24 24 C 1.38236 * 119.99668 * 319.72307 * 23 12 11 25 25 C 1.38243 * 119.99519 * 179.81129 * 24 23 12 26 26 C 1.38235 * 119.99861 * 0.40134 * 25 24 23 27 27 C 1.38234 * 120.00000 * 359.85388 * 26 25 24 28 28 C 1.38230 * 119.99675 * 140.00385 * 23 12 11 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 4 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 4 2 1 34 34 H 1.08992 * 109.46981 * 59.99525 * 6 5 4 35 35 H 1.08996 * 109.46998 * 180.02562 * 6 5 4 36 36 H 1.09001 * 109.46692 * 299.99877 * 6 5 4 37 37 H 0.97004 * 120.00223 * 94.99655 * 8 2 1 38 38 H 0.96995 * 120.00471 * 0.02562 * 11 9 8 39 39 H 1.08995 * 109.47497 * 54.99839 * 14 12 11 40 40 H 1.09005 * 109.47342 * 174.99862 * 14 12 11 41 41 H 0.96998 * 120.00085 * 179.97438 * 18 17 15 42 42 H 1.07996 * 120.00337 * 0.02562 * 24 23 12 43 43 H 1.07993 * 119.99519 * 180.23114 * 25 24 23 44 44 H 1.08001 * 119.99565 * 179.83343 * 26 25 24 45 45 H 1.08007 * 119.99587 * 179.97438 * 27 26 25 46 46 H 1.07994 * 120.00897 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 3.8539 -0.7220 -1.2489 6 6 4.2620 -1.6050 -2.7801 7 8 4.3271 -1.4639 -0.1332 8 7 2.0183 -0.6906 1.1962 9 6 2.1471 -0.0182 2.3571 10 8 1.8576 1.1613 2.4118 11 7 2.5958 -0.6538 3.4577 12 6 2.7364 0.0772 4.7195 13 1 1.9404 0.8174 4.8011 14 6 2.6430 -0.9034 5.8901 15 6 1.2627 -1.5072 5.9307 16 1 0.5259 -1.2199 5.1953 17 6 0.9405 -2.4256 6.9072 18 7 -0.2641 -2.9522 6.9429 19 14 2.2149 -2.9221 8.1796 20 1 2.1234 -2.0151 9.3518 21 1 1.9624 -4.3195 8.6140 22 1 3.5721 -2.8263 7.5844 23 6 4.0734 0.7718 4.7514 24 6 5.1974 0.1302 4.2657 25 6 6.4232 0.7688 4.2915 26 6 6.5264 2.0458 4.8106 27 6 5.4033 2.6854 5.3011 28 6 4.1769 2.0483 5.2718 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6766 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.8434 -1.0685 -3.6314 35 1 5.3450 -1.6672 -2.8860 36 1 3.8427 -2.6105 -2.7423 37 1 2.2490 -1.6318 1.1526 38 1 2.8265 -1.5949 3.4142 39 1 3.3818 -1.6943 5.7614 40 1 2.8358 -0.3745 6.8235 41 1 -0.4907 -3.5986 7.6297 42 1 5.1172 -0.8687 3.8629 43 1 7.3005 0.2689 3.9086 44 1 7.4845 2.5437 4.8331 45 1 5.4841 3.6830 5.7071 46 1 3.2996 2.5480 5.6551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183033957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:48 Heat of formation + Delta-G solvation = -72.723048 kcal Electronic energy + Delta-G solvation = -27674.276990 eV Core-core repulsion = 23882.392478 eV Total energy + Delta-G solvation = -3791.884512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27799 -39.96801 -37.51231 -36.66591 -36.35215 -34.71253 -33.23368 -31.74266 -31.29407 -30.93198 -29.73204 -28.25647 -26.70501 -23.60322 -23.40534 -22.97936 -21.69490 -21.25024 -19.43294 -19.06847 -18.37922 -17.79603 -17.30777 -16.66221 -16.42982 -16.30866 -16.05056 -15.73600 -15.56674 -15.25985 -15.13090 -14.94294 -14.62011 -14.34721 -14.16122 -14.02804 -13.82545 -13.77428 -13.57950 -13.50569 -13.24386 -13.03817 -12.90836 -12.55091 -12.53365 -12.41732 -12.06859 -11.93133 -11.75940 -11.72286 -11.44290 -11.20573 -11.06230 -10.80285 -10.23822 -9.76585 -9.70526 -9.50900 -9.09324 -8.31030 -6.35387 0.51710 0.57682 0.67716 1.34039 1.34788 1.46672 1.79874 1.91395 2.28179 2.32938 2.94056 2.98067 3.03768 3.41962 3.71123 3.95391 4.04310 4.13230 4.21994 4.33622 4.34313 4.35651 4.37678 4.51207 4.58441 4.58972 4.74549 4.77219 4.78774 4.86348 5.00154 5.02371 5.15622 5.18901 5.18998 5.26065 5.29103 5.53477 5.60795 5.65183 5.65782 5.67762 5.86224 6.09317 6.19838 6.24553 6.70725 7.12586 7.28507 7.68596 8.85518 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009137 B = 0.004120 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.584888 B = 6793.979425 C = 8414.634035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.097 0.903 4 C -0.449 4.449 5 S 1.274 4.726 6 C -0.487 4.487 7 O -0.906 6.906 8 N -0.741 5.741 9 C 0.706 3.294 10 O -0.631 6.631 11 N -0.718 5.718 12 C 0.223 3.777 13 H 0.058 0.942 14 C -0.004 4.004 15 C -0.518 4.518 16 H 0.029 0.971 17 C 0.011 3.989 18 N -0.948 5.948 19 Si 0.946 3.054 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.247 1.247 23 C -0.099 4.099 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.128 4.128 29 H 0.028 0.972 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.179 0.821 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.399 0.601 38 H 0.398 0.602 39 H 0.030 0.970 40 H 0.033 0.967 41 H 0.266 0.734 42 H 0.109 0.891 43 H 0.141 0.859 44 H 0.153 0.847 45 H 0.148 0.852 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.344 8.604 -21.023 26.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.066 3.934 3 H 0.115 0.885 4 C -0.586 4.586 5 S 1.474 4.526 6 C -0.645 4.645 7 O -0.902 6.902 8 N -0.397 5.397 9 C 0.406 3.594 10 O -0.513 6.513 11 N -0.370 5.370 12 C 0.117 3.883 13 H 0.076 0.924 14 C -0.042 4.042 15 C -0.556 4.556 16 H 0.048 0.952 17 C -0.186 4.186 18 N -0.588 5.588 19 Si 0.769 3.231 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.171 1.171 23 C -0.100 4.100 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.138 4.138 28 C -0.146 4.146 29 H 0.047 0.953 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.196 0.804 34 H 0.166 0.834 35 H 0.125 0.875 36 H 0.085 0.915 37 H 0.234 0.766 38 H 0.232 0.768 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.127 0.873 43 H 0.159 0.841 44 H 0.171 0.829 45 H 0.166 0.834 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.594 9.908 -20.209 26.294 hybrid contribution -1.144 -3.751 0.869 4.017 sum 12.451 6.157 -19.340 23.811 Atomic orbital electron populations 1.22170 0.94954 1.01869 1.02530 1.20569 0.94599 0.97066 0.81167 0.88468 1.27995 1.20967 1.06240 1.03408 1.70015 0.85510 1.13424 0.83655 1.27637 1.08856 1.10194 1.17858 1.93072 1.74690 1.75426 1.46963 1.45386 1.71328 1.14044 1.08975 1.16046 0.77598 0.84770 0.81006 1.90805 1.59356 1.15801 1.85337 1.44983 1.69826 1.13579 1.08610 1.19420 0.92877 0.93063 0.82909 0.92411 1.19731 0.95892 0.94667 0.93925 1.21179 0.97222 1.23771 1.13405 0.95217 1.25894 0.97239 0.95717 0.99719 1.70064 1.21860 1.30933 1.35986 0.85726 0.80394 0.77560 0.79379 1.19226 1.20979 1.17103 1.20411 0.95355 0.95350 0.98930 1.21000 0.92926 0.99905 0.99999 1.21383 0.97073 0.95972 0.99890 1.21461 0.99480 0.94856 0.98369 1.21399 0.91878 1.00777 0.99704 1.21179 0.99014 0.94248 1.00171 0.95281 0.88075 0.93069 0.89430 0.80372 0.83429 0.87540 0.91472 0.76649 0.76769 0.95199 0.94895 0.92522 0.87316 0.84143 0.82892 0.83440 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 9.48 71.98 0.68 -3.01 16 2 C 0.17 3.99 2.63 44.99 0.12 4.11 16 3 H 0.10 2.28 7.58 -2.39 -0.02 2.26 16 4 C -0.45 -5.78 5.48 71.98 0.39 -5.39 16 5 S 1.27 17.71 13.68 -56.49 -0.77 16.94 16 6 C -0.49 -4.21 10.74 113.37 1.22 -3.00 16 7 O -0.91 -26.38 16.51 -148.98 -2.46 -28.84 16 8 N -0.74 -23.97 4.05 -457.82 -1.85 -25.82 16 9 C 0.71 29.16 8.49 179.05 1.52 30.68 16 10 O -0.63 -29.43 15.67 -3.96 -0.06 -29.49 16 11 N -0.72 -30.55 4.05 -461.42 -1.87 -32.42 16 12 C 0.22 10.01 2.11 44.25 0.09 10.10 16 13 H 0.06 2.92 7.44 -2.39 -0.02 2.90 16 14 C 0.00 -0.21 3.56 29.85 0.11 -0.11 16 15 C -0.52 -30.34 9.39 25.60 0.24 -30.10 16 16 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 17 C 0.01 0.67 5.47 84.65 0.46 1.14 16 18 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 19 Si 0.95 44.99 27.47 68.60 1.88 46.88 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 23 C -0.10 -3.85 4.91 -19.86 -0.10 -3.95 16 24 C -0.12 -4.22 9.32 22.27 0.21 -4.01 16 25 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 26 C -0.12 -3.07 10.05 22.27 0.22 -2.85 16 27 C -0.12 -3.28 10.05 22.27 0.22 -3.05 16 28 C -0.13 -4.45 9.67 22.27 0.22 -4.23 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.18 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.40 12.66 7.83 -92.71 -0.73 11.93 16 38 H 0.40 16.33 8.62 -92.71 -0.80 15.53 16 39 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 40 H 0.03 1.58 7.57 -2.38 -0.02 1.56 16 41 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 42 H 0.11 3.89 7.73 -2.91 -0.02 3.87 16 43 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 44 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 45 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 46 H 0.12 4.01 8.04 -2.91 -0.02 3.99 16 Total: -1.00 -88.07 395.14 0.41 -87.67 By element: Atomic # 1 Polarization: 42.58 SS G_CDS: -0.60 Total: 41.98 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 5.83 Total: -16.98 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -3.42 Total: -118.16 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -2.52 Total: -58.33 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.88 kcal Atomic # 16 Polarization: 17.71 SS G_CDS: -0.77 Total: 16.94 kcal Total: -88.07 0.41 -87.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183033957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.944 kcal (2) G-P(sol) polarization free energy of solvation -88.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds