Wall clock time and date at job start Tue Mar 31 2020 21:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 S 1.81397 * 109.46988 * 184.99723 * 4 2 1 6 6 C 1.81402 * 103.00118 * 179.97438 * 5 4 2 7 7 O 1.42095 * 109.47264 * 296.39381 * 5 4 2 8 8 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 9 9 C 1.34777 * 119.99828 * 84.72116 * 8 2 1 10 10 O 1.21593 * 119.99949 * 0.28071 * 9 8 2 11 11 N 1.34777 * 120.00128 * 180.27942 * 9 8 2 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.47375 * 35.00280 * 12 11 9 14 14 C 1.53002 * 109.46916 * 154.99838 * 12 11 9 15 15 C 1.50704 * 109.47424 * 294.99835 * 14 12 11 16 16 H 1.08006 * 119.99370 * 359.97438 * 15 14 12 17 17 C 1.37867 * 120.00455 * 180.02562 * 15 14 12 18 18 N 1.31511 * 120.00488 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99655 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47303 * 90.00313 * 19 17 15 21 21 H 1.48505 * 109.46759 * 210.00057 * 19 17 15 22 22 H 1.48492 * 109.47290 * 329.99942 * 19 17 15 23 23 C 1.50691 * 109.47207 * 274.99665 * 12 11 9 24 24 C 1.38236 * 120.00335 * 319.72931 * 23 12 11 25 25 C 1.38238 * 120.00008 * 179.78705 * 24 23 12 26 26 C 1.38225 * 120.00279 * 0.43747 * 25 24 23 27 27 C 1.38241 * 119.99983 * 359.81455 * 26 25 24 28 28 C 1.38236 * 119.99826 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 33 33 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 34 34 H 1.08999 * 109.46419 * 60.00075 * 6 5 4 35 35 H 1.08992 * 109.47093 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.47287 * 300.00657 * 6 5 4 37 37 H 0.97001 * 120.00384 * 265.00562 * 8 2 1 38 38 H 0.97000 * 119.99549 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.47355 * 54.99838 * 14 12 11 40 40 H 1.09001 * 109.47079 * 175.00066 * 14 12 11 41 41 H 0.96997 * 120.00777 * 180.02562 * 18 17 15 42 42 H 1.08004 * 119.99846 * 359.97438 * 24 23 12 43 43 H 1.08005 * 119.99364 * 180.27521 * 25 24 23 44 44 H 1.07998 * 120.00219 * 179.83475 * 26 25 24 45 45 H 1.08001 * 120.00083 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.00040 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 16 3.8478 -0.5933 1.3256 6 6 4.2566 -1.4917 2.8476 7 8 4.4178 -1.2652 0.2107 8 7 2.0184 -0.6906 -1.1962 9 6 2.1417 -0.0196 -2.3585 10 8 1.8526 1.1602 -2.4130 11 7 2.5857 -0.6562 -3.4603 12 6 2.7203 0.0733 -4.7236 13 1 3.0326 1.0977 -4.5202 14 6 3.7684 -0.6147 -5.6006 15 6 5.1189 -0.5183 -4.9387 16 1 5.2196 -0.0162 -3.9878 17 6 6.2260 -1.0702 -5.5474 18 7 7.4044 -0.9866 -4.9696 19 14 6.0521 -1.9369 -7.1931 20 1 6.2450 -0.9565 -8.2917 21 1 7.0760 -3.0073 -7.2994 22 1 4.6973 -2.5358 -7.2965 23 6 1.3950 0.0851 -5.4406 24 6 0.6028 -1.0477 -5.4478 25 6 -0.6150 -1.0354 -6.1018 26 6 -1.0366 0.1068 -6.7562 27 6 -0.2421 1.2381 -6.7535 28 6 0.9737 1.2272 -6.0958 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9127 -2.5227 2.7643 35 1 5.3361 -1.4794 2.9980 36 1 3.7665 -1.0126 3.6951 37 1 2.2490 -1.6318 -1.1527 38 1 2.8167 -1.5973 -3.4167 39 1 3.5016 -1.6635 -5.7306 40 1 3.8052 -0.1257 -6.5741 41 1 8.1834 -1.3745 -5.3980 42 1 0.9340 -1.9415 -4.9398 43 1 -1.2359 -1.9192 -6.1036 44 1 -1.9868 0.1155 -7.2694 45 1 -0.5713 2.1304 -7.2651 46 1 1.5946 2.1109 -6.0940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183033977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:51 Heat of formation + Delta-G solvation = -43.802402 kcal Electronic energy + Delta-G solvation = -27601.410870 eV Core-core repulsion = 23810.780452 eV Total energy + Delta-G solvation = -3790.630418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.81252 -38.70201 -36.24119 -35.56920 -34.82024 -32.59794 -31.77855 -30.55943 -30.07499 -29.17229 -28.99405 -27.43470 -24.92977 -22.33900 -21.83886 -21.68008 -20.39637 -19.72034 -17.99388 -17.43938 -17.01295 -16.40919 -16.12032 -15.55697 -15.03528 -14.92068 -14.76461 -14.37530 -14.27945 -14.17117 -13.81950 -13.48769 -13.13516 -13.05913 -13.01154 -12.82558 -12.77083 -12.52603 -12.40694 -12.31593 -12.03431 -11.68332 -11.63291 -11.26664 -11.11501 -11.01260 -10.67012 -10.55855 -10.12387 -10.07637 -9.77055 -9.58091 -9.21327 -8.82427 -8.56419 -8.51441 -8.28536 -8.25428 -8.17635 -5.99886 -3.98891 1.44894 1.74448 1.77015 2.56914 3.19354 3.32458 3.39844 3.42430 3.80024 3.82344 4.18108 4.46585 4.57244 4.75854 4.93972 5.00505 5.09818 5.22483 5.24696 5.25307 5.33205 5.34702 5.38415 5.51942 5.53896 5.68769 5.75334 5.88346 5.90637 5.95536 6.12390 6.19632 6.31889 6.37786 6.52047 6.80312 6.81915 6.84251 6.93480 7.01483 7.15110 7.36742 7.38054 7.58235 7.75570 8.54923 8.62333 9.08663 9.21214 9.60557 11.13112 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008192 B = 0.004577 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.132422 B = 6115.920037 C = 8960.588076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.184 3.816 3 H 0.097 0.903 4 C -0.465 4.465 5 S 1.248 4.752 6 C -0.499 4.499 7 O -0.818 6.818 8 N -0.749 5.749 9 C 0.712 3.288 10 O -0.600 6.600 11 N -0.715 5.715 12 C 0.212 3.788 13 H 0.092 0.908 14 C -0.014 4.014 15 C -0.516 4.516 16 H 0.078 0.922 17 C 0.070 3.930 18 N -0.897 5.897 19 Si 0.874 3.126 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.073 4.073 24 C -0.108 4.108 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.107 4.107 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.396 0.604 38 H 0.397 0.603 39 H 0.021 0.979 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.052 1.313 12.988 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.077 3.923 3 H 0.115 0.885 4 C -0.601 4.601 5 S 1.444 4.556 6 C -0.656 4.656 7 O -0.813 6.813 8 N -0.406 5.406 9 C 0.412 3.588 10 O -0.479 6.479 11 N -0.366 5.366 12 C 0.107 3.893 13 H 0.110 0.890 14 C -0.051 4.051 15 C -0.554 4.554 16 H 0.096 0.904 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.701 3.299 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.075 4.075 24 C -0.126 4.126 25 C -0.144 4.144 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.125 4.125 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.230 0.770 38 H 0.231 0.769 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.466 2.769 12.281 19.176 hybrid contribution -0.407 -3.725 -0.777 3.827 sum -14.872 -0.957 11.503 18.826 Atomic orbital electron populations 1.22178 0.95152 1.01769 1.02543 1.20198 0.94158 0.96796 0.81125 0.88507 1.28115 1.22372 1.05990 1.03637 1.71001 0.84782 1.14476 0.85328 1.27757 1.08602 1.10672 1.18526 1.93289 1.69165 1.75347 1.43539 1.45239 1.72401 1.13986 1.08931 1.15861 0.77829 0.84938 0.80202 1.90851 1.58000 1.14232 1.84866 1.45009 1.69236 1.13931 1.08448 1.19805 0.90005 0.97871 0.81599 0.89012 1.19879 0.94315 0.95754 0.95201 1.21032 0.89730 1.36889 1.07716 0.90428 1.24980 0.95244 0.95712 0.97200 1.69915 0.99098 1.45651 1.38933 0.86879 0.78100 0.79887 0.84997 1.20235 1.21476 1.19082 1.20652 0.96934 0.93263 0.96646 1.20915 0.94352 0.98023 0.99338 1.21033 0.96627 0.97970 0.98806 1.20993 0.99708 0.93747 1.00865 1.21053 0.94961 0.98073 1.00020 1.21046 0.96121 0.97909 0.97451 0.91572 0.92998 0.91818 0.85392 0.89402 0.90495 0.87814 0.87370 0.77039 0.76936 0.96042 0.95277 0.92796 0.86687 0.86847 0.86865 0.86552 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 2 C 0.18 2.16 2.57 -67.93 -0.17 1.99 16 3 H 0.10 1.20 7.58 -51.93 -0.39 0.80 16 4 C -0.46 -3.75 5.45 37.16 0.20 -3.54 16 5 S 1.25 11.92 13.73 -107.50 -1.48 10.45 16 6 C -0.50 -3.70 10.74 101.05 1.09 -2.62 16 7 O -0.82 -14.42 16.96 -35.23 -0.60 -15.02 16 8 N -0.75 -11.48 4.14 -58.68 -0.24 -11.73 16 9 C 0.71 13.76 8.48 -86.92 -0.74 13.02 16 10 O -0.60 -13.15 15.67 5.28 0.08 -13.07 16 11 N -0.71 -14.12 4.05 -59.81 -0.24 -14.36 16 12 C 0.21 4.48 2.11 -69.09 -0.15 4.33 16 13 H 0.09 2.13 7.44 -51.93 -0.39 1.74 16 14 C -0.01 -0.33 3.56 -27.88 -0.10 -0.43 16 15 C -0.52 -14.64 9.39 -34.44 -0.32 -14.96 16 16 H 0.08 2.46 7.99 -52.48 -0.42 2.04 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 19 Si 0.87 21.80 27.47 -169.99 -4.67 17.13 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 23 C -0.07 -1.37 4.91 -104.63 -0.51 -1.89 16 24 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 25 C -0.13 -1.87 10.05 -39.59 -0.40 -2.27 16 26 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 27 C -0.12 -1.83 10.05 -39.58 -0.40 -2.22 16 28 C -0.11 -1.84 9.67 -39.58 -0.38 -2.23 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 34 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.40 5.82 8.26 -40.82 -0.34 5.49 16 38 H 0.40 7.49 8.62 -40.82 -0.35 7.14 16 39 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 40 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.12 1.85 7.73 -52.48 -0.41 1.44 16 43 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 44 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 46 H 0.12 2.01 8.04 -52.49 -0.42 1.59 16 LS Contribution 396.06 15.07 5.97 5.97 Total: -1.00 -39.09 396.06 -10.10 -49.19 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -7.30 Total: 13.38 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -2.40 Total: -14.66 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.29 Total: -53.37 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.51 Total: -28.09 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Atomic # 16 Polarization: 11.92 SS G_CDS: -1.48 Total: 10.45 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.09 -10.10 -49.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183033977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.385 kcal (2) G-P(sol) polarization free energy of solvation -39.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds