Wall clock time and date at job start Tue Mar 31 2020 21:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 S 1.81397 * 109.46988 * 184.99723 * 4 2 1 6 6 C 1.81402 * 103.00118 * 179.97438 * 5 4 2 7 7 O 1.42095 * 109.47264 * 296.39381 * 5 4 2 8 8 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 9 9 C 1.34777 * 119.99828 * 84.72116 * 8 2 1 10 10 O 1.21593 * 119.99949 * 0.28071 * 9 8 2 11 11 N 1.34777 * 120.00128 * 180.27942 * 9 8 2 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.47375 * 35.00280 * 12 11 9 14 14 C 1.53002 * 109.46916 * 154.99838 * 12 11 9 15 15 C 1.50704 * 109.47424 * 294.99835 * 14 12 11 16 16 H 1.08006 * 119.99370 * 359.97438 * 15 14 12 17 17 C 1.37867 * 120.00455 * 180.02562 * 15 14 12 18 18 N 1.31511 * 120.00488 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99655 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47303 * 90.00313 * 19 17 15 21 21 H 1.48505 * 109.46759 * 210.00057 * 19 17 15 22 22 H 1.48492 * 109.47290 * 329.99942 * 19 17 15 23 23 C 1.50691 * 109.47207 * 274.99665 * 12 11 9 24 24 C 1.38236 * 120.00335 * 319.72931 * 23 12 11 25 25 C 1.38238 * 120.00008 * 179.78705 * 24 23 12 26 26 C 1.38225 * 120.00279 * 0.43747 * 25 24 23 27 27 C 1.38241 * 119.99983 * 359.81455 * 26 25 24 28 28 C 1.38236 * 119.99826 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 33 33 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 34 34 H 1.08999 * 109.46419 * 60.00075 * 6 5 4 35 35 H 1.08992 * 109.47093 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.47287 * 300.00657 * 6 5 4 37 37 H 0.97001 * 120.00384 * 265.00562 * 8 2 1 38 38 H 0.97000 * 119.99549 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.47355 * 54.99838 * 14 12 11 40 40 H 1.09001 * 109.47079 * 175.00066 * 14 12 11 41 41 H 0.96997 * 120.00777 * 180.02562 * 18 17 15 42 42 H 1.08004 * 119.99846 * 359.97438 * 24 23 12 43 43 H 1.08005 * 119.99364 * 180.27521 * 25 24 23 44 44 H 1.07998 * 120.00219 * 179.83475 * 26 25 24 45 45 H 1.08001 * 120.00083 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.00040 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 16 3.8478 -0.5933 1.3256 6 6 4.2566 -1.4917 2.8476 7 8 4.4178 -1.2652 0.2107 8 7 2.0184 -0.6906 -1.1962 9 6 2.1417 -0.0196 -2.3585 10 8 1.8526 1.1602 -2.4130 11 7 2.5857 -0.6562 -3.4603 12 6 2.7203 0.0733 -4.7236 13 1 3.0326 1.0977 -4.5202 14 6 3.7684 -0.6147 -5.6006 15 6 5.1189 -0.5183 -4.9387 16 1 5.2196 -0.0162 -3.9878 17 6 6.2260 -1.0702 -5.5474 18 7 7.4044 -0.9866 -4.9696 19 14 6.0521 -1.9369 -7.1931 20 1 6.2450 -0.9565 -8.2917 21 1 7.0760 -3.0073 -7.2994 22 1 4.6973 -2.5358 -7.2965 23 6 1.3950 0.0851 -5.4406 24 6 0.6028 -1.0477 -5.4478 25 6 -0.6150 -1.0354 -6.1018 26 6 -1.0366 0.1068 -6.7562 27 6 -0.2421 1.2381 -6.7535 28 6 0.9737 1.2272 -6.0958 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9127 -2.5227 2.7643 35 1 5.3361 -1.4794 2.9980 36 1 3.7665 -1.0126 3.6951 37 1 2.2490 -1.6318 -1.1527 38 1 2.8167 -1.5973 -3.4167 39 1 3.5016 -1.6635 -5.7306 40 1 3.8052 -0.1257 -6.5741 41 1 8.1834 -1.3745 -5.3980 42 1 0.9340 -1.9415 -4.9398 43 1 -1.2359 -1.9192 -6.1036 44 1 -1.9868 0.1155 -7.2694 45 1 -0.5713 2.1304 -7.2651 46 1 1.5946 2.1109 -6.0940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183033977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:51 Heat of formation + Delta-G solvation = -73.120946 kcal Electronic energy + Delta-G solvation = -27602.682217 eV Core-core repulsion = 23810.780452 eV Total energy + Delta-G solvation = -3791.901766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28241 -39.98146 -37.50889 -36.68553 -36.36231 -34.70373 -33.24002 -31.76614 -31.29995 -30.93719 -29.75549 -28.23266 -26.71184 -23.61807 -23.40588 -22.99652 -21.69203 -21.26731 -19.44458 -19.06063 -18.36509 -17.78606 -17.41273 -16.56826 -16.38282 -16.30916 -16.17668 -15.78309 -15.53339 -15.26806 -15.11451 -14.96971 -14.62695 -14.32598 -14.18126 -14.02605 -13.85559 -13.75125 -13.59011 -13.49836 -13.25192 -13.04165 -12.91441 -12.55077 -12.50987 -12.42518 -12.04003 -11.93692 -11.75642 -11.73451 -11.43892 -11.21054 -11.07021 -10.79151 -10.24286 -9.78135 -9.70876 -9.52991 -9.09957 -8.28651 -6.33741 0.49503 0.55314 0.67026 1.33807 1.34944 1.46681 1.80823 1.89707 2.29234 2.33738 2.93165 2.98116 3.05364 3.41178 3.71523 3.93798 4.02328 4.15938 4.19977 4.31159 4.32300 4.35960 4.36431 4.51914 4.58068 4.58719 4.72810 4.75169 4.83210 4.85780 4.99611 5.04404 5.13408 5.16137 5.17309 5.26201 5.31337 5.53549 5.60079 5.63561 5.64367 5.66704 5.85084 6.08588 6.17542 6.26215 6.73479 7.12530 7.29675 7.68383 8.88475 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008192 B = 0.004577 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.132422 B = 6115.920037 C = 8960.588076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.168 3.832 3 H 0.087 0.913 4 C -0.443 4.443 5 S 1.254 4.746 6 C -0.482 4.482 7 O -0.913 6.913 8 N -0.739 5.739 9 C 0.705 3.295 10 O -0.632 6.632 11 N -0.718 5.718 12 C 0.223 3.777 13 H 0.055 0.945 14 C -0.003 4.003 15 C -0.518 4.518 16 H 0.025 0.975 17 C 0.007 3.993 18 N -0.949 5.949 19 Si 0.950 3.050 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.245 1.245 23 C -0.097 4.097 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.127 4.127 27 C -0.121 4.121 28 C -0.129 4.129 29 H 0.033 0.967 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.182 0.818 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.152 0.848 37 H 0.398 0.602 38 H 0.398 0.602 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.116 0.884 43 H 0.145 0.855 44 H 0.152 0.848 45 H 0.146 0.854 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.688 0.204 13.166 22.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.063 3.937 3 H 0.105 0.895 4 C -0.581 4.581 5 S 1.455 4.545 6 C -0.641 4.641 7 O -0.909 6.909 8 N -0.395 5.395 9 C 0.405 3.595 10 O -0.514 6.514 11 N -0.370 5.370 12 C 0.117 3.883 13 H 0.073 0.927 14 C -0.041 4.041 15 C -0.556 4.556 16 H 0.043 0.957 17 C -0.190 4.190 18 N -0.590 5.590 19 Si 0.773 3.227 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.168 1.168 23 C -0.098 4.098 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.144 4.144 27 C -0.139 4.139 28 C -0.148 4.148 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.199 0.801 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.170 0.830 37 H 0.232 0.768 38 H 0.232 0.768 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.134 0.866 43 H 0.163 0.837 44 H 0.170 0.830 45 H 0.163 0.837 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.112 1.660 12.474 22.055 hybrid contribution 0.646 -3.304 -0.608 3.421 sum -17.466 -1.644 11.866 21.179 Atomic orbital electron populations 1.22106 0.93609 1.02331 1.02712 1.20595 0.95402 0.96629 0.81068 0.89491 1.27938 1.19908 1.06445 1.03765 1.69892 0.85507 1.14471 0.84609 1.27588 1.08961 1.10141 1.17436 1.93180 1.72358 1.77474 1.47854 1.45325 1.71407 1.14042 1.08745 1.16057 0.77698 0.84716 0.80987 1.90808 1.59518 1.15584 1.85485 1.44971 1.69497 1.13868 1.08642 1.19405 0.91333 0.95515 0.82035 0.92698 1.19724 0.92465 0.96583 0.95320 1.21185 0.92472 1.35928 1.06005 0.95699 1.25972 0.94544 0.96636 1.01811 1.70092 1.00256 1.47359 1.41297 0.85671 0.79089 0.78679 0.79244 1.19106 1.21088 1.16793 1.20399 0.96195 0.95036 0.98212 1.21030 0.95341 0.97398 1.00122 1.21406 0.95723 0.99519 0.97545 1.21471 1.00670 0.92698 0.99600 1.21396 0.93679 0.99725 0.99088 1.21184 0.97659 0.97405 0.98521 0.94767 0.92169 0.88246 0.80065 0.88868 0.91206 0.88142 0.82964 0.76766 0.76754 0.94989 0.94850 0.92595 0.86607 0.83747 0.83035 0.83651 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.48 71.98 0.68 -2.22 16 2 C 0.17 3.89 2.57 44.99 0.12 4.01 16 3 H 0.09 2.20 7.58 -2.39 -0.02 2.18 16 4 C -0.44 -6.14 5.45 71.98 0.39 -5.75 16 5 S 1.25 24.13 13.73 -56.49 -0.78 23.36 16 6 C -0.48 -6.16 10.74 113.37 1.22 -4.94 16 7 O -0.91 -34.74 16.96 -148.98 -2.53 -37.27 16 8 N -0.74 -23.81 4.14 -457.81 -1.89 -25.71 16 9 C 0.71 29.22 8.48 179.05 1.52 30.74 16 10 O -0.63 -29.68 15.67 -4.01 -0.06 -29.74 16 11 N -0.72 -30.50 4.05 -461.41 -1.87 -32.37 16 12 C 0.22 10.03 2.11 44.24 0.09 10.12 16 13 H 0.05 2.82 7.44 -2.38 -0.02 2.80 16 14 C 0.00 -0.16 3.56 29.85 0.11 -0.05 16 15 C -0.52 -31.23 9.39 25.60 0.24 -30.99 16 16 H 0.02 1.71 7.99 -2.91 -0.02 1.69 16 17 C 0.01 0.43 5.47 84.65 0.46 0.90 16 18 N -0.95 -62.27 13.96 21.44 0.30 -61.97 16 19 Si 0.95 45.68 27.47 68.60 1.88 47.56 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.24 -10.83 6.54 99.48 0.65 -10.17 16 23 C -0.10 -3.70 4.91 -19.87 -0.10 -3.80 16 24 C -0.12 -3.99 9.32 22.27 0.21 -3.78 16 25 C -0.12 -3.29 10.05 22.27 0.22 -3.07 16 26 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 27 C -0.12 -3.31 10.05 22.27 0.22 -3.09 16 28 C -0.13 -4.49 9.67 22.27 0.22 -4.28 16 29 H 0.03 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.18 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.40 12.38 8.26 -92.71 -0.77 11.62 16 38 H 0.40 16.18 8.62 -92.71 -0.80 15.38 16 39 H 0.03 1.50 7.20 -2.39 -0.02 1.49 16 40 H 0.03 1.61 7.57 -2.39 -0.02 1.59 16 41 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 42 H 0.12 3.69 7.73 -2.91 -0.02 3.67 16 43 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 44 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 45 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 46 H 0.11 4.00 8.04 -2.91 -0.02 3.97 16 Total: -1.00 -93.61 396.06 0.25 -93.37 By element: Atomic # 1 Polarization: 42.45 SS G_CDS: -0.64 Total: 41.81 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 5.83 Total: -19.05 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -3.46 Total: -120.04 kcal Atomic # 8 Polarization: -64.42 SS G_CDS: -2.59 Total: -67.01 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.56 kcal Atomic # 16 Polarization: 24.13 SS G_CDS: -0.78 Total: 23.36 kcal Total: -93.61 0.25 -93.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183033977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.245 kcal (2) G-P(sol) polarization free energy of solvation -93.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds