Wall clock time and date at job start Tue Mar 31 2020 21:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47311 * 2 1 4 4 C 1.53003 * 109.46967 * 240.00100 * 2 1 3 5 5 S 1.81411 * 109.46909 * 180.02562 * 4 2 1 6 6 C 1.81401 * 102.99819 * 180.02562 * 5 4 2 7 7 O 1.42099 * 109.46686 * 296.38532 * 5 4 2 8 8 N 1.46506 * 109.47213 * 120.00292 * 2 1 3 9 9 C 1.34771 * 119.99515 * 275.00201 * 8 2 1 10 10 O 1.21583 * 120.00543 * 0.26795 * 9 8 2 11 11 N 1.34784 * 119.99547 * 179.97438 * 9 8 2 12 12 C 1.46499 * 119.99971 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.47230 * 34.99566 * 12 11 9 14 14 C 1.52990 * 109.47333 * 154.99849 * 12 11 9 15 15 C 1.50700 * 109.47298 * 295.00384 * 14 12 11 16 16 H 1.08005 * 119.99908 * 359.97438 * 15 14 12 17 17 C 1.37876 * 120.00214 * 179.97438 * 15 14 12 18 18 N 1.31521 * 120.00257 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00120 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47264 * 90.00055 * 19 17 15 21 21 H 1.48494 * 109.47259 * 210.00182 * 19 17 15 22 22 H 1.48504 * 109.46796 * 330.00264 * 19 17 15 23 23 C 1.50698 * 109.47310 * 275.00428 * 12 11 9 24 24 C 1.38239 * 119.99557 * 319.72041 * 23 12 11 25 25 C 1.38240 * 119.99976 * 179.81257 * 24 23 12 26 26 C 1.38234 * 119.99872 * 0.40020 * 25 24 23 27 27 C 1.38235 * 119.99887 * 359.85321 * 26 25 24 28 28 C 1.38227 * 120.00500 * 140.00096 * 23 12 11 29 29 H 1.08999 * 109.46886 * 300.00311 * 1 2 3 30 30 H 1.09002 * 109.46959 * 59.99714 * 1 2 3 31 31 H 1.08999 * 109.47559 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47344 * 299.99759 * 4 2 1 33 33 H 1.08992 * 109.47124 * 60.00296 * 4 2 1 34 34 H 1.09002 * 109.47336 * 59.99421 * 6 5 4 35 35 H 1.08994 * 109.47258 * 180.02562 * 6 5 4 36 36 H 1.08998 * 109.46892 * 299.99752 * 6 5 4 37 37 H 0.96999 * 120.00076 * 94.99859 * 8 2 1 38 38 H 0.96999 * 120.00044 * 359.97438 * 11 9 8 39 39 H 1.09003 * 109.47330 * 55.00229 * 14 12 11 40 40 H 1.08999 * 109.47417 * 174.99813 * 14 12 11 41 41 H 0.96991 * 120.00096 * 180.02562 * 18 17 15 42 42 H 1.08003 * 120.00100 * 0.02562 * 24 23 12 43 43 H 1.07992 * 119.99958 * 180.23473 * 25 24 23 44 44 H 1.07995 * 120.00322 * 179.83585 * 26 25 24 45 45 H 1.08005 * 120.00098 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.00085 * 359.97387 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 16 3.8540 -0.7219 -1.2489 6 6 4.2621 -1.6049 -2.7801 7 8 4.3281 0.6150 -1.3330 8 7 2.0183 -0.6907 1.1962 9 6 2.1470 -0.0183 2.3571 10 8 1.8532 1.1601 2.4130 11 7 2.5958 -0.6539 3.4577 12 6 2.7362 0.0770 4.7195 13 1 1.9402 0.8173 4.8012 14 6 2.6427 -0.9036 5.8901 15 6 1.2626 -1.5075 5.9305 16 1 0.5256 -1.2202 5.1951 17 6 0.9406 -2.4268 6.9064 18 7 -0.2640 -2.9534 6.9420 19 14 2.2153 -2.9243 8.1780 20 1 2.1241 -2.0183 9.3511 21 1 1.9630 -4.3220 8.6113 22 1 3.5723 -2.8279 7.5825 23 6 4.0731 0.7717 4.7517 24 6 5.1972 0.1301 4.2659 25 6 6.4229 0.7687 4.2918 26 6 6.5261 2.0457 4.8109 27 6 5.4031 2.6852 5.3014 28 6 4.1766 2.0480 5.2721 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.8434 -1.0683 -3.6315 35 1 5.3451 -1.6670 -2.8861 36 1 3.8428 -2.6103 -2.7424 37 1 2.2490 -1.6318 1.1526 38 1 2.8258 -1.5952 3.4143 39 1 3.3817 -1.6945 5.7615 40 1 2.8354 -0.3748 6.8235 41 1 -0.4906 -3.5998 7.6287 42 1 5.1171 -0.8688 3.8631 43 1 7.3003 0.2689 3.9089 44 1 7.4842 2.5436 4.8336 45 1 5.4837 3.6828 5.7075 46 1 3.2992 2.5477 5.6553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183033994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:54 Heat of formation + Delta-G solvation = -46.777114 kcal Electronic energy + Delta-G solvation = -27490.749598 eV Core-core repulsion = 23699.990187 eV Total energy + Delta-G solvation = -3790.759412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.89852 -38.72406 -36.28708 -35.84761 -34.90491 -32.70401 -31.87741 -30.55769 -30.14488 -29.28483 -29.09845 -27.46060 -24.99114 -22.35702 -21.88409 -21.71732 -20.50220 -19.79293 -18.19652 -17.59275 -17.09240 -16.47506 -16.10604 -15.71004 -15.21714 -15.05873 -14.86867 -14.45120 -14.31863 -14.23113 -13.85674 -13.60012 -13.25928 -13.06531 -13.02569 -12.95217 -12.81832 -12.62376 -12.47984 -12.33063 -12.06204 -11.81710 -11.70997 -11.30856 -11.12477 -11.00213 -10.68803 -10.60865 -10.30062 -10.12836 -9.84104 -9.66101 -9.30883 -9.01116 -8.61444 -8.54180 -8.45225 -8.32671 -8.21541 -6.09942 -4.09313 1.25907 1.75354 1.78624 2.38961 3.05220 3.27016 3.35230 3.37324 3.58136 3.72403 4.18633 4.39140 4.50238 4.68359 4.81476 4.84159 4.95304 5.23308 5.24626 5.25478 5.25938 5.34974 5.43453 5.50898 5.51751 5.59710 5.73369 5.88730 5.90694 5.98735 6.10428 6.29193 6.30487 6.37587 6.49029 6.70848 6.79973 6.83673 6.87489 6.98991 7.08132 7.27653 7.38263 7.49756 7.67134 8.45004 8.52460 8.96835 9.11348 9.51191 11.02824 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009293 B = 0.003991 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.394869 B = 7014.393250 C = 8743.365089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.186 3.814 3 H 0.091 0.909 4 C -0.459 4.459 5 S 1.248 4.752 6 C -0.498 4.498 7 O -0.841 6.841 8 N -0.753 5.753 9 C 0.707 3.293 10 O -0.591 6.591 11 N -0.716 5.716 12 C 0.213 3.787 13 H 0.091 0.909 14 C -0.014 4.014 15 C -0.518 4.518 16 H 0.076 0.924 17 C 0.071 3.929 18 N -0.899 5.899 19 Si 0.874 3.126 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C -0.077 4.077 24 C -0.108 4.108 25 C -0.125 4.125 26 C -0.134 4.134 27 C -0.123 4.123 28 C -0.107 4.107 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.396 0.604 38 H 0.398 0.602 39 H 0.024 0.976 40 H 0.029 0.971 41 H 0.263 0.737 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.236 -0.676 -14.536 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.079 3.921 3 H 0.109 0.891 4 C -0.597 4.597 5 S 1.445 4.555 6 C -0.655 4.655 7 O -0.837 6.837 8 N -0.411 5.411 9 C 0.407 3.593 10 O -0.469 6.469 11 N -0.368 5.368 12 C 0.108 3.892 13 H 0.109 0.891 14 C -0.052 4.052 15 C -0.556 4.556 16 H 0.094 0.906 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.702 3.298 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.189 1.189 23 C -0.078 4.078 24 C -0.126 4.126 25 C -0.143 4.143 26 C -0.152 4.152 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.230 0.770 38 H 0.232 0.768 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.473 0.696 -13.724 17.278 hybrid contribution -0.156 -0.315 -1.212 1.262 sum 10.317 0.381 -14.937 18.157 Atomic orbital electron populations 1.22181 0.94724 1.02365 1.02562 1.20164 0.94588 0.96592 0.80720 0.89071 1.27999 1.21268 1.07468 1.02936 1.70853 0.86433 0.97757 1.00407 1.27737 1.08514 1.11053 1.18187 1.93174 1.72893 1.35785 1.81819 1.45262 1.73084 1.13583 1.09163 1.15923 0.78118 0.85066 0.80227 1.90894 1.56936 1.14702 1.84392 1.45027 1.69775 1.13482 1.08513 1.19808 0.91981 0.94371 0.83082 0.89069 1.19879 0.98669 0.94121 0.92510 1.21024 0.96090 1.23678 1.14775 0.90562 1.24982 0.95027 0.95807 0.97286 1.69907 1.19440 1.29776 1.34639 0.86870 0.82679 0.77861 0.82411 1.20284 1.21452 1.18903 1.20621 0.96469 0.94289 0.96428 1.20916 0.92112 0.99738 0.99872 1.21049 0.97389 0.95397 1.00512 1.21007 0.98164 0.95582 1.00449 1.21055 0.92942 0.99625 1.00479 1.21037 0.97605 0.94507 0.99416 0.91235 0.92335 0.92153 0.85816 0.88204 0.90342 0.87743 0.86944 0.77015 0.76831 0.95777 0.95243 0.92701 0.86388 0.86693 0.86870 0.86619 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.48 37.16 0.35 -1.54 16 2 C 0.19 2.24 2.63 -67.93 -0.18 2.06 16 3 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.46 -3.62 5.48 37.16 0.20 -3.42 16 5 S 1.25 10.44 13.38 -107.50 -1.44 9.00 16 6 C -0.50 -3.03 10.74 101.05 1.09 -1.95 16 7 O -0.84 -13.44 18.14 -35.23 -0.64 -14.08 16 8 N -0.75 -9.29 4.62 -58.67 -0.27 -9.56 16 9 C 0.71 12.22 8.49 -86.92 -0.74 11.49 16 10 O -0.59 -12.81 15.67 5.29 0.08 -12.72 16 11 N -0.72 -12.08 4.05 -59.82 -0.24 -12.32 16 12 C 0.21 4.12 2.12 -69.09 -0.15 3.97 16 13 H 0.09 2.00 7.43 -51.93 -0.39 1.61 16 14 C -0.01 -0.30 3.56 -27.89 -0.10 -0.40 16 15 C -0.52 -13.47 9.39 -34.44 -0.32 -13.80 16 16 H 0.08 2.20 7.99 -52.48 -0.42 1.78 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -26.27 13.96 55.43 0.77 -25.49 16 19 Si 0.87 20.36 27.47 -169.99 -4.67 15.70 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 23 C -0.08 -1.35 4.91 -104.63 -0.51 -1.87 16 24 C -0.11 -1.69 9.32 -39.58 -0.37 -2.06 16 25 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 26 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 27 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 28 C -0.11 -1.81 9.67 -39.58 -0.38 -2.20 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 0.37 8.14 -51.92 -0.42 -0.06 16 37 H 0.40 3.28 8.62 -40.82 -0.35 2.93 16 38 H 0.40 5.74 8.62 -40.82 -0.35 5.39 16 39 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 40 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.12 1.62 7.73 -52.48 -0.41 1.21 16 43 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 46 H 0.12 1.97 8.04 -52.49 -0.42 1.55 16 LS Contribution 397.81 15.07 5.99 5.99 Total: -1.00 -38.45 397.81 -10.12 -48.57 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -7.31 Total: 9.46 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -2.40 Total: -14.54 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.26 Total: -47.37 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.56 Total: -26.80 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.70 kcal Atomic # 16 Polarization: 10.44 SS G_CDS: -1.44 Total: 9.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.45 -10.12 -48.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183033994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.795 kcal (2) G-P(sol) polarization free energy of solvation -38.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds