Wall clock time and date at job start Tue Mar 31 2020 21:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.46844 * 2 1 4 4 C 1.46899 * 111.00214 * 72.23825 * 3 2 1 5 5 C 1.52991 * 109.47323 * 199.99900 * 4 3 2 6 6 O 1.42900 * 109.47143 * 64.65139 * 5 4 3 7 7 C 1.46900 * 110.99757 * 196.19138 * 3 2 1 8 8 C 1.53002 * 109.47245 * 66.04228 * 7 3 2 9 9 N 1.46495 * 109.47191 * 179.97438 * 8 7 3 10 10 C 1.34781 * 120.00259 * 180.02562 * 9 8 7 11 11 O 1.21552 * 119.99422 * 359.97438 * 10 9 8 12 12 C 1.47860 * 120.00230 * 180.02562 * 10 9 8 13 13 C 1.39673 * 120.09936 * 359.71777 * 12 10 9 14 14 C 1.38045 * 120.03197 * 179.74917 * 13 12 10 15 15 C 1.38177 * 120.24725 * 0.55512 * 14 13 12 16 16 C 1.39179 * 120.20083 * 359.69985 * 15 14 13 17 17 S 1.76201 * 120.01887 * 179.97438 * 16 15 14 18 18 C 1.76194 * 100.00198 * 274.86225 * 17 16 15 19 19 H 1.08008 * 119.99952 * 5.01579 * 18 17 16 20 20 C 1.38723 * 120.00021 * 185.02111 * 18 17 16 21 21 N 1.31626 * 120.00317 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00186 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.47082 * 59.99498 * 22 20 18 24 24 H 1.48493 * 109.47565 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47055 * 299.99979 * 22 20 18 26 26 C 1.38878 * 119.95719 * 0.02562 * 16 15 14 27 27 H 1.09002 * 109.47216 * 61.31915 * 1 2 3 28 28 H 1.09001 * 109.47223 * 181.31205 * 1 2 3 29 29 H 1.08998 * 109.47428 * 301.31578 * 1 2 3 30 30 H 1.08995 * 109.47176 * 239.99399 * 2 1 3 31 31 H 1.09003 * 109.46617 * 119.99836 * 2 1 3 32 32 H 1.09001 * 109.46817 * 320.00446 * 4 3 2 33 33 H 1.09002 * 109.46873 * 80.00046 * 4 3 2 34 34 H 1.08997 * 109.47198 * 184.64982 * 5 4 3 35 35 H 1.09005 * 109.47210 * 304.65336 * 5 4 3 36 36 H 0.96704 * 114.00531 * 184.99509 * 6 5 4 37 37 H 1.09002 * 109.47317 * 306.04617 * 7 3 2 38 38 H 1.08997 * 109.47121 * 186.04915 * 7 3 2 39 39 H 1.08997 * 109.47621 * 300.00380 * 8 7 3 40 40 H 1.09002 * 109.46646 * 59.99977 * 8 7 3 41 41 H 0.97006 * 120.00317 * 0.02562 * 9 8 7 42 42 H 1.08000 * 119.98335 * 0.02562 * 13 12 10 43 43 H 1.08007 * 119.86997 * 180.25529 * 14 13 12 44 44 H 1.07996 * 119.89464 * 179.72082 * 15 14 13 45 45 H 0.97000 * 120.00345 * 180.02562 * 21 20 18 46 46 H 1.08005 * 120.11692 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8006 2.0209 1.3060 5 6 1.8431 3.5418 1.1464 6 8 0.7534 3.9651 0.3245 7 6 3.4368 1.4424 -0.3824 8 6 3.5900 1.0020 -1.8397 9 7 5.0032 1.0598 -2.2212 10 6 5.3792 0.7143 -3.4686 11 8 4.5457 0.3543 -4.2767 12 6 6.8057 0.7720 -3.8535 13 6 7.7646 1.1900 -2.9279 14 6 9.0966 1.2384 -3.2872 15 6 9.4861 0.8855 -4.5650 16 6 8.5384 0.4726 -5.4969 17 16 9.0404 0.0242 -7.1253 18 6 9.0602 1.6126 -7.8877 19 1 8.8769 2.4977 -7.2965 20 6 9.3111 1.7263 -9.2473 21 7 9.5349 0.6477 -9.9678 22 14 9.3329 3.4103 -10.0555 23 1 10.3845 4.2483 -9.4251 24 1 9.6223 3.2605 -11.5042 25 1 8.0098 4.0611 -9.8792 26 6 7.1967 0.4153 -5.1428 27 1 -0.3634 0.4932 -0.9016 28 1 -0.3634 -1.0274 0.0235 29 1 -0.3634 0.5341 0.8779 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 0.8273 1.7235 1.6962 33 1 2.5813 1.7063 1.9987 34 1 1.7633 4.0124 2.1263 35 1 2.7844 3.8320 0.6795 36 1 0.7607 4.9097 0.1173 37 1 4.0138 0.7777 0.2605 38 1 3.8022 2.4632 -0.2709 39 1 3.2246 -0.0188 -1.9512 40 1 3.0130 1.6667 -2.4826 41 1 5.6685 1.3467 -1.5762 42 1 7.4643 1.4711 -1.9293 43 1 9.8364 1.5581 -2.5681 44 1 10.5292 0.9298 -4.8414 45 1 9.7107 0.7272 -10.9184 46 1 6.4592 0.0948 -5.8638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183977196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:57 Heat of formation + Delta-G solvation = -58.161356 kcal Electronic energy + Delta-G solvation = -25752.018229 eV Core-core repulsion = 21960.765160 eV Total energy + Delta-G solvation = -3791.253069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.02115 -38.90061 -37.79636 -36.62261 -34.84865 -32.50065 -31.71725 -31.25834 -30.57071 -29.91579 -27.22106 -25.56329 -24.00304 -23.27832 -22.74323 -22.04535 -20.89301 -20.28236 -18.34337 -17.78110 -17.37351 -16.63251 -16.36434 -15.78474 -15.64041 -15.35182 -14.98764 -14.84856 -14.81227 -14.31984 -14.23935 -13.79256 -13.68000 -13.55983 -13.39659 -13.09194 -12.89278 -12.43453 -12.34262 -12.17441 -11.83757 -11.78506 -11.62728 -11.23309 -11.16548 -11.12114 -11.06779 -10.99927 -10.71416 -10.31390 -9.99526 -9.78933 -9.18852 -9.15146 -8.98741 -8.73037 -8.58889 -8.03069 -6.70646 -6.27730 -4.01997 1.16139 1.65716 2.88934 3.04919 3.21167 3.24104 3.27102 3.45315 3.63768 3.89263 4.09068 4.26399 4.41504 4.59567 4.64541 4.71569 4.84929 4.87202 4.92030 5.06583 5.08942 5.09991 5.12610 5.15445 5.22391 5.24759 5.30773 5.48054 5.52090 5.64282 5.70024 5.70678 5.78567 5.86702 5.98135 5.99272 6.24127 6.31540 6.57361 6.62577 6.62989 6.66488 6.92878 7.18299 7.33419 7.46914 7.57651 8.28742 8.32826 9.17785 10.78990 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016718 B = 0.002013 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.404716 B =13906.005877 C =14223.963839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 N -0.525 5.525 4 C 0.052 3.948 5 C 0.082 3.918 6 O -0.559 6.559 7 C 0.043 3.957 8 C 0.123 3.877 9 N -0.733 5.733 10 C 0.565 3.435 11 O -0.532 6.532 12 C -0.154 4.154 13 C -0.090 4.090 14 C -0.141 4.141 15 C -0.055 4.055 16 C -0.106 4.106 17 S -0.035 6.035 18 C -0.520 4.520 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.273 1.273 26 C -0.018 4.018 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.375 0.625 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.397 0.603 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.131 0.869 45 H 0.270 0.730 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.675 3.523 26.089 28.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 N -0.250 5.250 4 C -0.076 4.076 5 C 0.003 3.997 6 O -0.363 6.363 7 C -0.086 4.086 8 C 0.000 4.000 9 N -0.387 5.387 10 C 0.353 3.647 11 O -0.409 6.409 12 C -0.159 4.159 13 C -0.109 4.109 14 C -0.161 4.161 15 C -0.076 4.076 16 C -0.217 4.217 17 S 0.200 5.800 18 C -0.668 4.668 19 H 0.093 0.907 20 C -0.136 4.136 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.199 1.199 24 H -0.207 1.207 25 H -0.198 1.198 26 C -0.040 4.040 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.221 0.779 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.232 0.768 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.149 0.851 45 H 0.080 0.920 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.425 1.749 24.501 27.527 hybrid contribution 0.750 2.576 1.066 2.887 sum -11.675 4.325 25.567 28.438 Atomic orbital electron populations 1.21759 0.94468 1.01259 1.02808 1.22225 0.96667 0.88317 1.01160 1.61822 1.16531 1.17628 1.28973 1.22209 1.02099 0.93515 0.89798 1.22159 0.89725 0.94418 0.93387 1.86583 1.48265 1.29360 1.72083 1.22289 0.89147 1.01663 0.95484 1.21260 0.81874 1.02258 0.94651 1.45800 1.08998 1.70184 1.13724 1.18378 0.88545 0.76515 0.81280 1.90784 1.53222 1.46513 1.50349 1.19850 0.92023 1.07846 0.96184 1.21122 0.93242 0.98676 0.97878 1.21060 0.95528 1.02593 0.96941 1.21993 1.00051 0.93454 0.92112 1.22860 0.94526 1.01388 1.02926 1.83616 1.86712 1.14287 0.95424 1.22786 1.56421 0.91657 0.95914 0.90681 1.25001 0.94451 0.98114 0.96022 1.69977 1.44848 1.28116 1.07598 0.86174 0.78933 0.82198 0.77987 1.19851 1.20732 1.19790 1.21936 0.95828 0.92264 0.93961 0.91547 0.92406 0.92797 0.90102 0.94840 0.89594 0.93204 0.93586 0.93704 0.77884 0.94211 0.90137 0.91336 0.90378 0.76773 0.86597 0.85893 0.85075 0.91996 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.00 37.16 0.37 -0.72 16 2 C 0.04 0.34 5.55 -3.82 -0.02 0.32 16 3 N -0.52 -4.29 4.33 -234.63 -1.02 -5.30 16 4 C 0.05 0.34 5.21 -3.83 -0.02 0.32 16 5 C 0.08 0.50 7.24 37.15 0.27 0.77 16 6 O -0.56 -4.47 13.60 -35.23 -0.48 -4.95 16 7 C 0.04 0.32 4.90 -3.82 -0.02 0.31 16 8 C 0.12 1.31 5.64 -4.04 -0.02 1.28 16 9 N -0.73 -8.39 5.51 -61.25 -0.34 -8.73 16 10 C 0.56 9.15 7.77 -12.32 -0.10 9.06 16 11 O -0.53 -10.71 16.34 5.32 0.09 -10.62 16 12 C -0.15 -2.59 5.87 -105.00 -0.62 -3.20 16 13 C -0.09 -1.21 9.54 -39.12 -0.37 -1.59 16 14 C -0.14 -2.01 10.02 -39.67 -0.40 -2.41 16 15 C -0.05 -0.99 9.79 -39.25 -0.38 -1.37 16 16 C -0.11 -2.28 5.45 -39.00 -0.21 -2.49 16 17 S -0.03 -0.90 21.41 -107.50 -2.30 -3.20 16 18 C -0.52 -14.71 9.46 30.91 0.29 -14.41 16 19 H 0.08 2.09 7.79 -52.48 -0.41 1.68 16 20 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 21 N -0.87 -25.54 13.22 55.49 0.73 -24.80 16 22 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.02 -0.37 9.34 -38.92 -0.36 -0.74 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.39 6.52 -51.93 -0.34 0.05 16 30 H 0.08 0.68 5.93 -51.93 -0.31 0.38 16 31 H 0.03 0.23 8.05 -51.93 -0.42 -0.19 16 32 H 0.09 0.59 6.24 -51.93 -0.32 0.26 16 33 H 0.05 0.26 7.99 -51.93 -0.42 -0.15 16 34 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.04 0.26 6.69 -51.93 -0.35 -0.09 16 36 H 0.38 1.51 9.12 45.56 0.42 1.93 16 37 H 0.04 0.27 8.12 -51.93 -0.42 -0.16 16 38 H 0.08 0.55 6.59 -51.93 -0.34 0.21 16 39 H 0.07 0.78 6.28 -51.93 -0.33 0.46 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.40 3.34 6.50 -40.82 -0.27 3.07 16 42 H 0.12 1.07 6.40 -52.49 -0.34 0.73 16 43 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 44 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.14 3.05 7.65 -52.48 -0.40 2.65 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -34.74 393.42 -10.01 -44.74 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.91 Total: 3.39 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.69 Total: -12.91 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.62 Total: -38.84 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.39 Total: -15.57 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.74 -10.01 -44.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183977196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.417 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds