Wall clock time and date at job start Tue Mar 31 2020 21:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.46844 * 2 1 4 4 C 1.46899 * 111.00214 * 72.23825 * 3 2 1 5 5 C 1.52991 * 109.47323 * 199.99900 * 4 3 2 6 6 O 1.42900 * 109.47143 * 64.65139 * 5 4 3 7 7 C 1.46900 * 110.99757 * 196.19138 * 3 2 1 8 8 C 1.53002 * 109.47245 * 66.04228 * 7 3 2 9 9 N 1.46495 * 109.47191 * 179.97438 * 8 7 3 10 10 C 1.34781 * 120.00259 * 180.02562 * 9 8 7 11 11 O 1.21552 * 119.99422 * 359.97438 * 10 9 8 12 12 C 1.47860 * 120.00230 * 180.02562 * 10 9 8 13 13 C 1.39673 * 120.09936 * 359.71777 * 12 10 9 14 14 C 1.38045 * 120.03197 * 179.74917 * 13 12 10 15 15 C 1.38177 * 120.24725 * 0.55512 * 14 13 12 16 16 C 1.39179 * 120.20083 * 359.69985 * 15 14 13 17 17 S 1.76201 * 120.01887 * 179.97438 * 16 15 14 18 18 C 1.76194 * 100.00198 * 274.86225 * 17 16 15 19 19 H 1.08008 * 119.99952 * 5.01579 * 18 17 16 20 20 C 1.38723 * 120.00021 * 185.02111 * 18 17 16 21 21 N 1.31626 * 120.00317 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00186 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.47082 * 59.99498 * 22 20 18 24 24 H 1.48493 * 109.47565 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47055 * 299.99979 * 22 20 18 26 26 C 1.38878 * 119.95719 * 0.02562 * 16 15 14 27 27 H 1.09002 * 109.47216 * 61.31915 * 1 2 3 28 28 H 1.09001 * 109.47223 * 181.31205 * 1 2 3 29 29 H 1.08998 * 109.47428 * 301.31578 * 1 2 3 30 30 H 1.08995 * 109.47176 * 239.99399 * 2 1 3 31 31 H 1.09003 * 109.46617 * 119.99836 * 2 1 3 32 32 H 1.09001 * 109.46817 * 320.00446 * 4 3 2 33 33 H 1.09002 * 109.46873 * 80.00046 * 4 3 2 34 34 H 1.08997 * 109.47198 * 184.64982 * 5 4 3 35 35 H 1.09005 * 109.47210 * 304.65336 * 5 4 3 36 36 H 0.96704 * 114.00531 * 184.99509 * 6 5 4 37 37 H 1.09002 * 109.47317 * 306.04617 * 7 3 2 38 38 H 1.08997 * 109.47121 * 186.04915 * 7 3 2 39 39 H 1.08997 * 109.47621 * 300.00380 * 8 7 3 40 40 H 1.09002 * 109.46646 * 59.99977 * 8 7 3 41 41 H 0.97006 * 120.00317 * 0.02562 * 9 8 7 42 42 H 1.08000 * 119.98335 * 0.02562 * 13 12 10 43 43 H 1.08007 * 119.86997 * 180.25529 * 14 13 12 44 44 H 1.07996 * 119.89464 * 179.72082 * 15 14 13 45 45 H 0.97000 * 120.00345 * 180.02562 * 21 20 18 46 46 H 1.08005 * 120.11692 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8006 2.0209 1.3060 5 6 1.8431 3.5418 1.1464 6 8 0.7534 3.9651 0.3245 7 6 3.4368 1.4424 -0.3824 8 6 3.5900 1.0020 -1.8397 9 7 5.0032 1.0598 -2.2212 10 6 5.3792 0.7143 -3.4686 11 8 4.5457 0.3543 -4.2767 12 6 6.8057 0.7720 -3.8535 13 6 7.7646 1.1900 -2.9279 14 6 9.0966 1.2384 -3.2872 15 6 9.4861 0.8855 -4.5650 16 6 8.5384 0.4726 -5.4969 17 16 9.0404 0.0242 -7.1253 18 6 9.0602 1.6126 -7.8877 19 1 8.8769 2.4977 -7.2965 20 6 9.3111 1.7263 -9.2473 21 7 9.5349 0.6477 -9.9678 22 14 9.3329 3.4103 -10.0555 23 1 10.3845 4.2483 -9.4251 24 1 9.6223 3.2605 -11.5042 25 1 8.0098 4.0611 -9.8792 26 6 7.1967 0.4153 -5.1428 27 1 -0.3634 0.4932 -0.9016 28 1 -0.3634 -1.0274 0.0235 29 1 -0.3634 0.5341 0.8779 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 0.8273 1.7235 1.6962 33 1 2.5813 1.7063 1.9987 34 1 1.7633 4.0124 2.1263 35 1 2.7844 3.8320 0.6795 36 1 0.7607 4.9097 0.1173 37 1 4.0138 0.7777 0.2605 38 1 3.8022 2.4632 -0.2709 39 1 3.2246 -0.0188 -1.9512 40 1 3.0130 1.6667 -2.4826 41 1 5.6685 1.3467 -1.5762 42 1 7.4643 1.4711 -1.9293 43 1 9.8364 1.5581 -2.5681 44 1 10.5292 0.9298 -4.8414 45 1 9.7107 0.7272 -10.9184 46 1 6.4592 0.0948 -5.8638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183977196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:56 Heat of formation + Delta-G solvation = -85.341055 kcal Electronic energy + Delta-G solvation = -25753.196829 eV Core-core repulsion = 21960.765160 eV Total energy + Delta-G solvation = -3792.431669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26485 -39.60676 -39.03959 -37.20444 -35.90830 -34.65164 -32.72822 -32.05974 -31.90498 -30.75759 -27.96899 -27.72869 -25.07477 -24.01170 -23.71282 -23.17377 -21.80652 -21.23945 -19.99361 -19.02022 -18.26716 -17.58879 -17.15249 -16.93199 -16.86806 -16.63985 -16.52955 -16.13608 -15.60859 -15.51705 -15.13100 -15.11122 -14.68127 -14.58870 -14.33424 -14.18308 -13.82789 -13.69329 -13.25982 -13.10151 -13.02363 -12.95719 -12.87465 -12.65471 -12.46171 -12.42826 -12.38344 -11.77329 -11.76876 -11.60151 -11.27157 -11.15397 -10.77143 -10.74519 -10.28891 -9.90098 -9.69481 -9.26455 -8.81021 -8.38928 -6.19447 -0.18771 0.25237 1.29435 1.39219 1.45350 1.63697 1.78131 1.94882 2.24615 2.80079 2.93932 2.96774 3.41963 3.50965 3.64875 3.78748 3.94226 3.98243 4.03552 4.09741 4.21279 4.32824 4.35511 4.43209 4.47657 4.50966 4.63250 4.65982 4.67017 4.70980 4.78527 4.89504 4.91190 4.94235 5.04557 5.10593 5.21750 5.28547 5.32775 5.36898 5.38174 5.50758 5.86120 6.08950 6.10259 6.15591 6.44514 7.01028 7.01641 7.12037 8.68028 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016718 B = 0.002013 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.404716 B =13906.005877 C =14223.963839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 N -0.543 5.543 4 C 0.050 3.950 5 C 0.078 3.922 6 O -0.586 6.586 7 C 0.053 3.947 8 C 0.126 3.874 9 N -0.705 5.705 10 C 0.562 3.438 11 O -0.583 6.583 12 C -0.156 4.156 13 C -0.061 4.061 14 C -0.120 4.120 15 C -0.063 4.063 16 C -0.129 4.129 17 S -0.099 6.099 18 C -0.535 4.535 19 H 0.069 0.931 20 C 0.018 3.982 21 N -0.907 5.907 22 Si 0.993 3.007 23 H -0.259 1.259 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.045 4.045 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.389 0.611 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.418 0.582 42 H 0.177 0.823 43 H 0.177 0.823 44 H 0.132 0.868 45 H 0.274 0.726 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.960 5.799 30.344 32.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 N -0.269 5.269 4 C -0.078 4.078 5 C 0.000 4.000 6 O -0.394 6.394 7 C -0.075 4.075 8 C 0.002 3.998 9 N -0.358 5.358 10 C 0.351 3.649 11 O -0.464 6.464 12 C -0.161 4.161 13 C -0.079 4.079 14 C -0.140 4.140 15 C -0.084 4.084 16 C -0.240 4.240 17 S 0.136 5.864 18 C -0.683 4.683 19 H 0.087 0.913 20 C -0.187 4.187 21 N -0.543 5.543 22 Si 0.815 3.185 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.067 4.067 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.237 0.763 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.256 0.744 42 H 0.194 0.806 43 H 0.194 0.806 44 H 0.150 0.850 45 H 0.083 0.917 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.693 4.043 28.824 31.367 hybrid contribution 0.443 1.851 -0.053 1.904 sum -11.250 5.894 28.770 31.449 Atomic orbital electron populations 1.21722 0.94636 1.01665 1.01916 1.22203 0.96568 0.88461 1.01151 1.61779 1.16896 1.17807 1.30392 1.22293 1.02500 0.93771 0.89206 1.22289 0.89394 0.94178 0.94102 1.86540 1.49278 1.30892 1.72647 1.22194 0.89387 1.02828 0.93087 1.21275 0.80687 1.01296 0.96561 1.45534 1.10030 1.68026 1.12236 1.18391 0.87931 0.76362 0.82266 1.90769 1.54341 1.49054 1.52221 1.19931 0.93294 1.07628 0.95275 1.21727 0.92025 0.94885 0.99273 1.21562 0.96940 0.99837 0.95632 1.22090 0.99423 0.93549 0.93379 1.22486 0.95758 1.05237 1.00528 1.83530 1.87411 1.15164 1.00335 1.23031 1.56484 0.92101 0.96648 0.91274 1.26036 0.93761 1.02410 0.96527 1.70109 1.45736 1.30502 1.07957 0.85082 0.79189 0.77017 0.77250 1.18364 1.19661 1.19547 1.21620 0.94784 0.94706 0.95580 0.93525 0.91466 0.92439 0.91336 0.93478 0.90181 0.91216 0.91758 0.93130 0.76268 0.92192 0.88662 0.92368 0.92750 0.74368 0.80599 0.80615 0.84981 0.91716 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 10.00 71.98 0.72 -1.32 16 2 C 0.04 0.62 5.55 86.30 0.48 1.09 16 3 N -0.54 -7.73 4.33 -896.24 -3.88 -11.61 16 4 C 0.05 0.52 5.21 86.30 0.45 0.97 16 5 C 0.08 0.74 7.24 71.98 0.52 1.27 16 6 O -0.59 -8.47 13.60 -148.98 -2.03 -10.50 16 7 C 0.05 0.64 4.90 86.30 0.42 1.06 16 8 C 0.13 2.47 5.64 86.38 0.49 2.95 16 9 N -0.70 -14.09 5.51 -465.96 -2.57 -16.65 16 10 C 0.56 17.79 7.77 86.79 0.67 18.46 16 11 O -0.58 -24.45 16.34 -3.88 -0.06 -24.51 16 12 C -0.16 -5.03 5.87 -20.11 -0.12 -5.15 16 13 C -0.06 -1.33 9.54 22.57 0.22 -1.11 16 14 C -0.12 -2.83 10.02 22.21 0.22 -2.61 16 15 C -0.06 -2.21 9.79 22.48 0.22 -1.99 16 16 C -0.13 -5.73 5.45 22.65 0.12 -5.61 16 17 S -0.10 -5.48 21.41 -56.49 -1.21 -6.69 16 18 C -0.54 -31.57 9.46 67.94 0.64 -30.92 16 19 H 0.07 4.00 7.79 -2.91 -0.02 3.97 16 20 C 0.02 1.03 5.49 84.84 0.47 1.49 16 21 N -0.91 -55.20 13.22 21.63 0.29 -54.91 16 22 Si 0.99 44.76 29.55 68.60 2.03 46.79 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 C -0.05 -1.92 9.34 22.70 0.21 -1.71 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.77 6.52 -2.39 -0.02 0.76 16 30 H 0.07 1.12 5.93 -2.39 -0.01 1.11 16 31 H 0.05 0.53 8.05 -2.39 -0.02 0.51 16 32 H 0.08 0.93 6.24 -2.39 -0.01 0.91 16 33 H 0.07 0.45 7.99 -2.39 -0.02 0.43 16 34 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.05 0.41 6.69 -2.38 -0.02 0.40 16 36 H 0.39 2.59 9.12 -74.05 -0.68 1.92 16 37 H 0.06 0.51 8.12 -2.39 -0.02 0.49 16 38 H 0.10 0.89 6.59 -2.39 -0.02 0.87 16 39 H 0.06 1.30 6.28 -2.39 -0.01 1.29 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.42 4.74 6.50 -92.70 -0.60 4.14 16 42 H 0.18 1.78 6.40 -2.91 -0.02 1.76 16 43 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 44 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 45 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 46 H 0.10 5.01 7.65 -2.91 -0.02 4.98 16 Total: -1.00 -83.39 393.42 -1.96 -85.35 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -0.27 Total: 15.87 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 5.74 Total: -23.12 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -6.16 Total: -83.18 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -2.09 Total: -35.02 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: -5.48 SS G_CDS: -1.21 Total: -6.69 kcal Total: -83.39 -1.96 -85.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183977196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.008 kcal (2) G-P(sol) polarization free energy of solvation -83.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds