Wall clock time and date at job start Tue Mar 31 2020 21:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47185 * 2 1 4 4 C 1.53003 * 109.47326 * 239.99398 * 2 1 3 5 5 S 1.81400 * 109.47193 * 179.97438 * 4 2 1 6 6 C 1.81402 * 102.99590 * 180.02562 * 5 4 2 7 7 O 1.42096 * 109.46709 * 63.61815 * 5 4 2 8 8 N 1.46507 * 109.47194 * 119.99984 * 2 1 3 9 9 C 1.34775 * 119.99725 * 275.00150 * 8 2 1 10 10 O 1.21596 * 120.00015 * 359.97438 * 9 8 2 11 11 N 1.34771 * 120.00181 * 179.97438 * 9 8 2 12 12 C 1.46500 * 120.00556 * 179.97438 * 11 9 8 13 13 H 1.09009 * 109.46624 * 324.99750 * 12 11 9 14 14 C 1.52996 * 109.47466 * 205.00158 * 12 11 9 15 15 C 1.50702 * 109.47159 * 64.99479 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.50700 * 109.47471 * 84.99708 * 12 11 9 24 24 C 1.38233 * 119.99377 * 39.72808 * 23 12 11 25 25 C 1.38237 * 119.99600 * 179.78842 * 24 23 12 26 26 C 1.38241 * 119.99990 * 0.44354 * 25 24 23 27 27 C 1.38237 * 119.99716 * 359.81238 * 26 25 24 28 28 C 1.38228 * 120.00326 * 220.00479 * 23 12 11 29 29 H 1.09002 * 109.47141 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47253 * 300.00223 * 1 2 3 31 31 H 1.08995 * 109.46933 * 60.00273 * 1 2 3 32 32 H 1.08997 * 109.47480 * 300.00421 * 4 2 1 33 33 H 1.08999 * 109.46530 * 59.99890 * 4 2 1 34 34 H 1.09006 * 109.47165 * 60.00375 * 6 5 4 35 35 H 1.08999 * 109.46546 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47664 * 299.99909 * 6 5 4 37 37 H 0.96998 * 120.00038 * 94.99987 * 8 2 1 38 38 H 0.97002 * 120.00072 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.47066 * 304.99682 * 14 12 11 40 40 H 1.08994 * 109.47405 * 184.99512 * 14 12 11 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.00514 * 359.97438 * 24 23 12 43 43 H 1.08001 * 120.00058 * 180.28006 * 25 24 23 44 44 H 1.07995 * 120.00194 * 179.83256 * 26 25 24 45 45 H 1.08001 * 119.99824 * 180.02562 * 27 26 25 46 46 H 1.08005 * 119.99906 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 16 3.8541 -0.7207 -1.2495 6 6 4.2620 -1.6040 -2.7805 7 8 4.3281 -1.4620 -0.1338 8 7 2.0184 -0.6906 1.1962 9 6 2.1470 -0.0182 2.3572 10 8 1.8582 1.1617 2.4116 11 7 2.5958 -0.6536 3.4577 12 6 2.7362 0.0774 4.7196 13 1 3.0478 1.1014 4.5134 14 6 3.7881 -0.6097 5.5927 15 6 5.1356 -0.5144 4.9246 16 1 5.2322 -0.0135 3.9726 17 6 6.2463 -1.0612 5.5316 18 7 6.1287 -1.6708 6.6910 19 14 7.9177 -0.9364 4.7071 20 1 8.2752 0.4936 4.5268 21 1 8.9395 -1.5991 5.5569 22 1 7.8674 -1.6050 3.3821 23 6 1.4140 0.0904 5.4425 24 6 0.6166 -1.0388 5.4450 25 6 -0.5942 -1.0283 6.1118 26 6 -1.0119 0.1143 6.7684 27 6 -0.2168 1.2451 6.7613 28 6 0.9960 1.2332 6.0982 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6767 -1.7490 -1.2492 33 1 1.6767 -0.2076 -2.1391 34 1 3.8427 -1.0680 -3.6320 35 1 5.3451 -1.6646 -2.8873 36 1 3.8435 -2.6097 -2.7424 37 1 2.2491 -1.6318 1.1527 38 1 2.8258 -1.5949 3.4144 39 1 3.5216 -1.6583 5.7252 40 1 3.8294 -0.1195 6.5653 41 1 6.9101 -2.0559 7.1179 42 1 0.9410 -1.9301 4.9285 43 1 -1.2152 -1.9119 6.1176 44 1 -1.9591 0.1234 7.2870 45 1 -0.5429 2.1377 7.2746 46 1 1.6172 2.1167 6.0929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248438494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:00 Heat of formation + Delta-G solvation = -48.122124 kcal Electronic energy + Delta-G solvation = -27612.574989 eV Core-core repulsion = 23821.757253 eV Total energy + Delta-G solvation = -3790.817736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.76586 -38.61768 -36.22163 -35.64035 -34.75339 -32.65594 -31.71629 -30.45862 -30.01824 -29.13746 -28.52706 -27.46602 -24.79997 -22.25463 -21.99278 -21.75422 -20.40690 -19.67109 -17.97912 -17.52206 -16.73348 -16.20790 -16.02992 -15.60575 -14.98251 -14.87511 -14.75820 -14.46200 -14.35634 -14.21050 -13.77579 -13.47720 -13.15775 -12.98531 -12.92327 -12.86340 -12.71623 -12.44461 -12.33401 -12.02833 -12.00321 -11.74353 -11.41663 -11.13589 -11.03433 -10.82680 -10.63393 -10.53793 -10.34974 -10.18390 -9.66346 -9.56361 -9.18777 -8.82841 -8.45567 -8.35095 -8.32660 -8.17437 -8.08057 -5.98279 -4.00263 1.37754 1.86232 1.88184 2.50009 3.21974 3.39011 3.41470 3.47200 3.73128 3.82666 4.28969 4.50896 4.54292 4.77614 4.90170 4.96793 5.03762 5.23961 5.33174 5.35011 5.36540 5.38981 5.45248 5.51131 5.63362 5.67958 5.69646 5.94636 5.99378 6.02446 6.19366 6.26034 6.44594 6.51651 6.68973 6.84213 6.92007 6.93270 7.08609 7.22280 7.45679 7.48830 7.62054 7.79017 7.99425 8.37605 8.65468 9.05474 9.23358 9.64273 11.12383 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007264 B = 0.005027 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3853.655386 B = 5568.339324 C = 8875.288967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.183 3.817 3 H 0.098 0.902 4 C -0.463 4.463 5 S 1.249 4.751 6 C -0.499 4.499 7 O -0.823 6.823 8 N -0.752 5.752 9 C 0.709 3.291 10 O -0.601 6.601 11 N -0.714 5.714 12 C 0.202 3.798 13 H 0.086 0.914 14 C 0.024 3.976 15 C -0.514 4.514 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.276 1.276 23 C -0.068 4.068 24 C -0.107 4.107 25 C -0.126 4.126 26 C -0.137 4.137 27 C -0.123 4.123 28 C -0.108 4.108 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.397 0.603 38 H 0.397 0.603 39 H 0.023 0.977 40 H 0.034 0.966 41 H 0.261 0.739 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.623 2.763 -16.533 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.077 3.923 3 H 0.116 0.884 4 C -0.600 4.600 5 S 1.445 4.555 6 C -0.655 4.655 7 O -0.818 6.818 8 N -0.409 5.409 9 C 0.409 3.591 10 O -0.481 6.481 11 N -0.366 5.366 12 C 0.097 3.903 13 H 0.105 0.895 14 C -0.013 4.013 15 C -0.553 4.553 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.201 1.201 23 C -0.070 4.070 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.155 4.155 27 C -0.142 4.142 28 C -0.126 4.126 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.146 0.854 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.232 0.768 38 H 0.231 0.769 39 H 0.041 0.959 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.123 4.110 -15.664 19.646 hybrid contribution 0.310 -3.176 -0.558 3.240 sum -10.813 0.933 -16.222 19.518 Atomic orbital electron populations 1.22176 0.95140 1.01791 1.02545 1.20207 0.94256 0.96800 0.81083 0.88446 1.28087 1.22125 1.06041 1.03747 1.70971 0.85925 1.14115 0.84521 1.27754 1.08475 1.10630 1.18676 1.93248 1.72370 1.73405 1.42816 1.45316 1.72423 1.14086 1.09080 1.15918 0.77938 0.84988 0.80256 1.90850 1.58107 1.14300 1.84845 1.45114 1.68829 1.13977 1.08647 1.20108 0.90782 0.97694 0.81728 0.89550 1.19391 0.91567 0.95847 0.94529 1.21115 0.92087 1.36250 1.05812 0.92316 1.24970 0.99083 0.95255 0.94844 1.69958 1.30077 1.37419 1.15982 0.86664 0.83658 0.78340 0.79452 1.20197 1.21457 1.20148 1.20625 0.96683 0.93147 0.96499 1.20893 0.94296 0.98021 0.99299 1.21025 0.96767 0.97881 0.98765 1.20969 0.99713 0.93776 1.01022 1.21028 0.95041 0.98056 1.00029 1.21014 0.96080 0.97892 0.97633 0.92998 0.91517 0.91864 0.89351 0.85365 0.87307 0.87841 0.90444 0.76848 0.76903 0.95899 0.94749 0.92980 0.86759 0.86926 0.86959 0.86672 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.48 37.16 0.35 -1.32 16 2 C 0.18 2.11 2.63 -67.93 -0.18 1.93 16 3 H 0.10 1.17 7.58 -51.93 -0.39 0.77 16 4 C -0.46 -3.58 5.48 37.16 0.20 -3.38 16 5 S 1.25 11.20 13.68 -107.50 -1.47 9.73 16 6 C -0.50 -3.45 10.74 101.05 1.09 -2.36 16 7 O -0.82 -13.63 16.51 -35.23 -0.58 -14.21 16 8 N -0.75 -11.40 4.05 -58.67 -0.24 -11.64 16 9 C 0.71 13.63 8.49 -86.92 -0.74 12.90 16 10 O -0.60 -13.11 15.67 5.28 0.08 -13.03 16 11 N -0.71 -14.27 4.02 -59.81 -0.24 -14.51 16 12 C 0.20 4.39 2.12 -69.08 -0.15 4.24 16 13 H 0.09 2.03 7.44 -51.92 -0.39 1.65 16 14 C 0.02 0.61 4.50 -27.88 -0.13 0.48 16 15 C -0.51 -14.42 8.84 -34.44 -0.30 -14.73 16 16 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 19 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 23 C -0.07 -1.34 4.91 -104.63 -0.51 -1.85 16 24 C -0.11 -1.92 9.33 -39.58 -0.37 -2.29 16 25 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 26 C -0.14 -2.05 10.05 -39.58 -0.40 -2.45 16 27 C -0.12 -1.95 10.05 -39.59 -0.40 -2.34 16 28 C -0.11 -1.96 9.67 -39.59 -0.38 -2.35 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.11 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 5.86 7.84 -40.82 -0.32 5.54 16 38 H 0.40 7.68 8.62 -40.82 -0.35 7.33 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.11 1.97 7.71 -52.49 -0.40 1.57 16 43 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 45 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 46 H 0.12 2.10 8.04 -52.48 -0.42 1.67 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -37.67 398.72 -10.45 -48.12 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -7.31 Total: 12.55 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.41 Total: -14.29 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.26 Total: -52.16 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.50 Total: -27.24 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 11.20 SS G_CDS: -1.47 Total: 9.73 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.67 -10.45 -48.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248438494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.003 kcal (2) G-P(sol) polarization free energy of solvation -37.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds