Wall clock time and date at job start Tue Mar 31 2020 21:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47034 * 2 1 4 4 C 1.50707 * 109.46673 * 240.00578 * 2 1 3 5 5 O 1.21274 * 120.00002 * 254.01900 * 4 2 1 6 6 N 1.34777 * 119.99814 * 73.74590 * 4 2 1 7 7 C 1.46494 * 120.00231 * 356.40859 * 6 4 2 8 8 C 1.50700 * 109.47559 * 95.57644 * 7 6 4 9 9 H 1.07998 * 119.99835 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00292 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00353 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00024 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47098 * 59.99872 * 12 10 8 14 14 H 1.48503 * 109.46847 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47123 * 299.99729 * 12 10 8 16 16 C 1.46503 * 119.99940 * 176.40437 * 6 4 2 17 17 C 1.50707 * 109.46837 * 85.10372 * 16 6 4 18 18 C 1.34511 * 125.78798 * 90.00164 * 17 16 6 19 19 C 1.41379 * 106.83689 * 179.97438 * 18 17 16 20 20 C 1.34505 * 106.84503 * 0.02562 * 19 18 17 21 21 O 1.34298 * 125.78860 * 269.69245 * 17 16 6 22 22 N 1.46896 * 109.47175 * 120.00761 * 2 1 3 23 23 C 1.46470 * 110.99984 * 60.98116 * 22 2 1 24 24 C 1.53251 * 109.85577 * 162.23396 * 23 22 2 25 25 S 1.81898 * 108.50845 * 62.00335 * 24 23 22 26 26 C 1.81904 * 101.91161 * 308.69110 * 25 24 23 27 27 C 1.46462 * 111.00008 * 294.99498 * 22 2 1 28 28 H 1.09002 * 109.46696 * 186.54202 * 1 2 3 29 29 H 1.08998 * 109.46813 * 306.53534 * 1 2 3 30 30 H 1.08998 * 109.47355 * 66.54295 * 1 2 3 31 31 H 1.09002 * 109.47387 * 215.57513 * 7 6 4 32 32 H 1.09006 * 109.47450 * 335.57865 * 7 6 4 33 33 H 0.96994 * 120.00184 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.47086 * 205.10402 * 16 6 4 35 35 H 1.08995 * 109.47022 * 325.10562 * 16 6 4 36 36 H 1.08001 * 126.57980 * 359.96110 * 18 17 16 37 37 H 1.08004 * 126.57729 * 179.97438 * 19 18 17 38 38 H 1.08002 * 125.79361 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.40260 * 282.34561 * 23 22 2 40 40 H 1.08996 * 109.40735 * 42.11578 * 23 22 2 41 41 H 1.09000 * 109.63591 * 302.29458 * 24 23 22 42 42 H 1.09001 * 109.79622 * 181.80210 * 24 23 22 43 43 H 1.09001 * 109.63364 * 291.60338 * 26 25 24 44 44 H 1.08995 * 109.79320 * 171.10724 * 26 25 24 45 45 H 1.08999 * 109.41217 * 317.89251 * 27 22 2 46 46 H 1.09007 * 109.40548 * 77.64925 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.5070 -1.8224 -1.1376 6 7 1.9488 -0.1119 -2.4353 7 6 1.2990 1.1951 -2.5606 8 6 2.3418 2.2818 -2.5078 9 1 3.3843 2.0246 -2.3921 10 6 1.9649 3.6043 -2.6062 11 7 0.6954 3.9177 -2.7466 12 14 3.2575 4.9513 -2.5401 13 1 4.2203 4.7687 -3.6559 14 1 2.5988 6.2761 -2.6672 15 1 3.9811 4.8799 -1.2452 16 6 2.5080 -0.7683 -3.6197 17 6 1.4936 -1.7266 -4.1889 18 6 0.5651 -1.4301 -5.1159 19 6 -0.1667 -2.6156 -5.3563 20 6 0.3579 -3.5654 -4.5614 21 8 1.3670 -3.0227 -3.8608 22 7 2.0197 -0.6926 1.1993 23 6 1.5693 -2.0862 1.2213 24 6 2.4240 -2.8940 2.2039 25 16 2.1988 -2.2006 3.8704 26 6 2.5175 -0.4322 3.5875 27 6 1.6500 0.0367 2.4144 28 1 -0.3633 -1.0210 0.1171 29 1 -0.3633 0.6118 0.8257 30 1 -0.3634 0.4091 -0.9427 31 1 0.7678 1.2472 -3.5110 32 1 0.5925 1.3296 -1.7415 33 1 0.4302 4.8481 -2.8154 34 1 2.7575 -0.0163 -4.3682 35 1 3.4083 -1.3158 -3.3406 36 1 0.4086 -0.4705 -5.5862 37 1 -0.9897 -2.7354 -6.0453 38 1 0.0268 -4.5916 -4.5002 39 1 0.5255 -2.1245 1.5329 40 1 1.6640 -2.5132 0.2230 41 1 3.4736 -2.8263 1.9179 42 1 2.1089 -3.9375 2.1959 43 1 3.5701 -0.2837 3.3467 44 1 2.2626 0.1365 4.4817 45 1 1.8013 1.1045 2.2562 46 1 0.6005 -0.1490 2.6431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269692745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:47 Heat of formation + Delta-G solvation = 6.509131 kcal Electronic energy + Delta-G solvation = -28655.075370 eV Core-core repulsion = 24866.626623 eV Total energy + Delta-G solvation = -3788.448747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.21598 -40.00425 -37.49613 -35.32743 -32.96650 -32.57041 -32.34261 -31.36016 -30.20570 -27.84420 -27.36650 -25.82833 -23.92429 -23.44428 -22.72852 -21.38003 -20.75521 -20.12431 -18.59944 -17.20181 -16.70997 -16.56512 -16.39186 -15.98373 -15.61118 -14.95034 -14.80342 -14.64107 -14.37324 -14.11774 -14.04962 -13.52322 -13.48109 -13.00940 -12.63878 -12.60078 -12.50884 -12.45743 -12.36179 -12.27132 -11.97467 -11.73117 -11.60406 -11.37099 -11.22420 -11.08950 -10.86718 -10.68574 -10.50974 -10.25280 -9.87181 -9.69695 -9.61466 -8.84668 -8.63016 -8.23963 -8.12865 -7.89660 -7.59263 -6.28045 -4.36007 1.91230 1.98848 2.63200 2.85921 3.11216 3.18584 3.24377 3.27023 3.40718 3.68941 4.15603 4.27589 4.91546 4.97424 5.03992 5.05863 5.13656 5.26344 5.30602 5.32225 5.36211 5.37546 5.48976 5.54792 5.58828 5.69165 5.76689 5.89637 5.97230 6.00405 6.07168 6.11216 6.14619 6.23258 6.28427 6.37513 6.38824 6.63662 6.78929 7.01916 7.20124 7.30035 7.36946 7.49018 7.65843 7.93127 8.17214 8.67050 8.85586 9.32480 10.78534 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007627 B = 0.005246 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3670.494046 B = 5335.820242 C = 8299.327528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.075 3.925 3 H 0.123 0.877 4 C 0.528 3.472 5 O -0.546 6.546 6 N -0.588 5.588 7 C 0.226 3.774 8 C -0.543 4.543 9 H 0.063 0.937 10 C 0.068 3.932 11 N -0.889 5.889 12 Si 0.896 3.104 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.199 3.801 17 C -0.013 4.013 18 C -0.204 4.204 19 C -0.217 4.217 20 C -0.053 4.053 21 O -0.164 6.164 22 N -0.530 5.530 23 C 0.028 3.972 24 C -0.058 4.058 25 S -0.299 6.299 26 C -0.067 4.067 27 C 0.055 3.945 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.267 0.733 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.195 0.805 39 H 0.035 0.965 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.349 -9.269 3.226 9.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.036 4.036 3 H 0.141 0.859 4 C 0.316 3.684 5 O -0.426 6.426 6 N -0.318 5.318 7 C 0.106 3.894 8 C -0.581 4.581 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.527 5.527 12 Si 0.724 3.276 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.200 1.200 16 C 0.075 3.925 17 C -0.065 4.065 18 C -0.224 4.224 19 C -0.236 4.236 20 C -0.121 4.121 21 O -0.059 6.059 22 N -0.254 5.254 23 C -0.100 4.100 24 C -0.207 4.207 25 S -0.074 6.074 26 C -0.216 4.216 27 C -0.075 4.075 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.105 0.895 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.212 0.788 39 H 0.053 0.947 40 H 0.153 0.847 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.106 0.894 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.799 -10.339 4.416 11.271 hybrid contribution -0.240 1.657 -1.237 2.081 sum -1.039 -8.683 3.179 9.305 Atomic orbital electron populations 1.22523 0.95416 1.02035 1.04319 1.21559 0.94184 0.99772 0.88067 0.85890 1.20264 0.78134 0.85452 0.84579 1.90424 1.46929 1.19773 1.85515 1.48258 1.57100 1.21454 1.05031 1.19775 0.93418 0.76912 0.99256 1.21444 0.94028 0.90696 1.51966 0.91914 1.24919 0.95448 0.98642 0.94549 1.69901 1.15167 1.18983 1.48671 0.86580 0.81467 0.80666 0.78935 1.20062 1.21158 1.20024 1.19696 0.92106 0.91953 0.88774 1.23222 1.01744 0.82694 0.98862 1.21664 0.98464 0.99994 1.02314 1.21780 1.03911 0.93605 1.04321 1.23952 0.91743 0.99628 0.96821 1.84118 1.44416 1.23084 1.54262 1.61028 1.61319 1.02059 1.00980 1.22879 0.95163 0.88411 1.03581 1.23452 1.04449 1.01068 0.91712 1.86678 1.93422 1.08835 1.18455 1.23446 1.03848 0.93269 1.01020 1.22203 0.97199 0.98962 0.89108 0.92636 0.91729 0.89757 0.94564 0.92902 0.92363 0.86800 0.89541 0.83438 0.83948 0.78785 0.94700 0.84746 0.89151 0.88191 0.89114 0.87852 0.89443 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 8.19 37.16 0.30 -2.63 16 2 C 0.08 1.30 1.90 -68.86 -0.13 1.17 16 3 H 0.12 2.34 7.28 -51.93 -0.38 1.96 16 4 C 0.53 10.21 6.74 -10.98 -0.07 10.13 16 5 O -0.55 -11.22 13.04 5.56 0.07 -11.15 16 6 N -0.59 -11.46 2.45 -176.43 -0.43 -11.89 16 7 C 0.23 4.89 4.61 -5.20 -0.02 4.87 16 8 C -0.54 -13.03 9.19 -34.44 -0.32 -13.34 16 9 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 10 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -23.05 13.29 55.43 0.74 -22.31 16 12 Si 0.90 19.53 29.54 -169.99 -5.02 14.51 16 13 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 14 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 16 C 0.20 3.51 5.88 -5.19 -0.03 3.48 16 17 C -0.01 -0.23 6.86 -35.62 -0.24 -0.47 16 18 C -0.20 -3.28 10.81 -39.70 -0.43 -3.71 16 19 C -0.22 -3.04 10.91 -39.71 -0.43 -3.47 16 20 C -0.05 -0.73 12.09 29.41 0.36 -0.38 16 21 O -0.16 -2.83 10.65 5.72 0.06 -2.76 16 22 N -0.53 -8.41 4.29 -228.44 -0.98 -9.39 16 23 C 0.03 0.43 4.05 -3.93 -0.02 0.42 16 24 C -0.06 -0.82 6.69 37.29 0.25 -0.57 16 25 S -0.30 -4.11 22.40 -107.50 -2.41 -6.52 16 26 C -0.07 -0.84 6.69 37.29 0.25 -0.59 16 27 C 0.05 0.74 4.65 -3.93 -0.02 0.73 16 28 H 0.05 0.86 6.51 -51.93 -0.34 0.52 16 29 H 0.06 0.93 7.28 -51.93 -0.38 0.56 16 30 H 0.08 1.47 5.60 -51.93 -0.29 1.18 16 31 H 0.04 0.84 8.11 -51.93 -0.42 0.42 16 32 H 0.05 1.17 4.14 -51.93 -0.22 0.95 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.11 1.90 8.03 -51.93 -0.42 1.49 16 35 H 0.09 1.52 7.63 -51.93 -0.40 1.13 16 36 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.14 1.62 8.06 -52.48 -0.42 1.19 16 38 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.03 0.53 6.96 -51.93 -0.36 0.17 16 40 H 0.14 2.39 4.62 -52.86 -0.24 2.15 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.09 1.15 7.83 -51.93 -0.41 0.74 16 46 H 0.05 0.64 7.31 -51.93 -0.38 0.26 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -27.34 375.88 -9.69 -37.04 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.73 Total: 9.59 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -0.66 Total: -2.77 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.68 Total: -43.60 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.13 Total: -13.91 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -2.41 Total: -6.52 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.34 -9.69 -37.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269692745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.547 kcal (2) G-P(sol) polarization free energy of solvation -27.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds