Wall clock time and date at job start Tue Mar 31 2020 21:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47034 * 2 1 4 4 C 1.50707 * 109.46673 * 240.00578 * 2 1 3 5 5 O 1.21274 * 120.00002 * 254.01900 * 4 2 1 6 6 N 1.34777 * 119.99814 * 73.74590 * 4 2 1 7 7 C 1.46494 * 120.00231 * 356.40859 * 6 4 2 8 8 C 1.50700 * 109.47559 * 95.57644 * 7 6 4 9 9 H 1.07998 * 119.99835 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00292 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00353 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00024 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47098 * 59.99872 * 12 10 8 14 14 H 1.48503 * 109.46847 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47123 * 299.99729 * 12 10 8 16 16 C 1.46503 * 119.99940 * 176.40437 * 6 4 2 17 17 C 1.50707 * 109.46837 * 85.10372 * 16 6 4 18 18 C 1.34511 * 125.78798 * 90.00164 * 17 16 6 19 19 C 1.41379 * 106.83689 * 179.97438 * 18 17 16 20 20 C 1.34505 * 106.84503 * 0.02562 * 19 18 17 21 21 O 1.34298 * 125.78860 * 269.69245 * 17 16 6 22 22 N 1.46896 * 109.47175 * 120.00761 * 2 1 3 23 23 C 1.46470 * 110.99984 * 60.98116 * 22 2 1 24 24 C 1.53251 * 109.85577 * 162.23396 * 23 22 2 25 25 S 1.81898 * 108.50845 * 62.00335 * 24 23 22 26 26 C 1.81904 * 101.91161 * 308.69110 * 25 24 23 27 27 C 1.46462 * 111.00008 * 294.99498 * 22 2 1 28 28 H 1.09002 * 109.46696 * 186.54202 * 1 2 3 29 29 H 1.08998 * 109.46813 * 306.53534 * 1 2 3 30 30 H 1.08998 * 109.47355 * 66.54295 * 1 2 3 31 31 H 1.09002 * 109.47387 * 215.57513 * 7 6 4 32 32 H 1.09006 * 109.47450 * 335.57865 * 7 6 4 33 33 H 0.96994 * 120.00184 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.47086 * 205.10402 * 16 6 4 35 35 H 1.08995 * 109.47022 * 325.10562 * 16 6 4 36 36 H 1.08001 * 126.57980 * 359.96110 * 18 17 16 37 37 H 1.08004 * 126.57729 * 179.97438 * 19 18 17 38 38 H 1.08002 * 125.79361 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.40260 * 282.34561 * 23 22 2 40 40 H 1.08996 * 109.40735 * 42.11578 * 23 22 2 41 41 H 1.09000 * 109.63591 * 302.29458 * 24 23 22 42 42 H 1.09001 * 109.79622 * 181.80210 * 24 23 22 43 43 H 1.09001 * 109.63364 * 291.60338 * 26 25 24 44 44 H 1.08995 * 109.79320 * 171.10724 * 26 25 24 45 45 H 1.08999 * 109.41217 * 317.89251 * 27 22 2 46 46 H 1.09007 * 109.40548 * 77.64925 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.5070 -1.8224 -1.1376 6 7 1.9488 -0.1119 -2.4353 7 6 1.2990 1.1951 -2.5606 8 6 2.3418 2.2818 -2.5078 9 1 3.3843 2.0246 -2.3921 10 6 1.9649 3.6043 -2.6062 11 7 0.6954 3.9177 -2.7466 12 14 3.2575 4.9513 -2.5401 13 1 4.2203 4.7687 -3.6559 14 1 2.5988 6.2761 -2.6672 15 1 3.9811 4.8799 -1.2452 16 6 2.5080 -0.7683 -3.6197 17 6 1.4936 -1.7266 -4.1889 18 6 0.5651 -1.4301 -5.1159 19 6 -0.1667 -2.6156 -5.3563 20 6 0.3579 -3.5654 -4.5614 21 8 1.3670 -3.0227 -3.8608 22 7 2.0197 -0.6926 1.1993 23 6 1.5693 -2.0862 1.2213 24 6 2.4240 -2.8940 2.2039 25 16 2.1988 -2.2006 3.8704 26 6 2.5175 -0.4322 3.5875 27 6 1.6500 0.0367 2.4144 28 1 -0.3633 -1.0210 0.1171 29 1 -0.3633 0.6118 0.8257 30 1 -0.3634 0.4091 -0.9427 31 1 0.7678 1.2472 -3.5110 32 1 0.5925 1.3296 -1.7415 33 1 0.4302 4.8481 -2.8154 34 1 2.7575 -0.0163 -4.3682 35 1 3.4083 -1.3158 -3.3406 36 1 0.4086 -0.4705 -5.5862 37 1 -0.9897 -2.7354 -6.0453 38 1 0.0268 -4.5916 -4.5002 39 1 0.5255 -2.1245 1.5329 40 1 1.6640 -2.5132 0.2230 41 1 3.4736 -2.8263 1.9179 42 1 2.1089 -3.9375 2.1959 43 1 3.5701 -0.2837 3.3467 44 1 2.2626 0.1365 4.4817 45 1 1.8013 1.1045 2.2562 46 1 0.6005 -0.1490 2.6431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269692745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:46 Heat of formation + Delta-G solvation = -7.980489 kcal Electronic energy + Delta-G solvation = -28655.703687 eV Core-core repulsion = 24866.626623 eV Total energy + Delta-G solvation = -3789.077064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.43916 -41.45201 -38.83438 -36.93189 -34.67576 -33.95168 -33.60528 -32.48218 -31.54731 -29.17238 -28.99698 -27.18462 -25.46636 -24.59978 -24.29811 -22.58990 -21.98759 -21.36045 -20.05597 -18.78178 -18.19229 -17.91901 -17.65351 -17.47058 -16.88321 -16.40625 -16.27859 -16.04700 -15.76894 -15.39444 -15.28490 -14.76878 -14.70546 -14.44520 -14.11750 -13.90087 -13.84284 -13.68080 -13.61811 -13.48700 -13.40103 -13.14518 -12.93530 -12.84713 -12.75475 -12.57366 -12.41931 -12.16175 -12.00195 -11.72476 -11.66473 -10.89315 -10.81049 -10.56963 -10.19974 -9.64880 -9.44235 -9.28445 -8.68848 -8.18276 -6.31617 0.75716 0.84821 1.45015 1.46959 1.53007 1.54707 1.64506 1.68875 2.14668 2.33547 2.43587 2.86715 3.13100 3.56724 3.79395 3.85890 3.94449 4.07731 4.12698 4.17254 4.18421 4.21720 4.27383 4.35306 4.38709 4.46922 4.57660 4.59029 4.69855 4.78594 4.81093 4.87183 4.93124 4.97650 5.03557 5.04660 5.08655 5.21546 5.29676 5.61161 5.66053 5.78409 5.89300 6.06771 6.10179 6.27367 6.55784 6.81056 7.26989 7.41602 8.87091 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007627 B = 0.005246 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3670.494046 B = 5335.820242 C = 8299.327528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.082 3.918 3 H 0.106 0.894 4 C 0.522 3.478 5 O -0.560 6.560 6 N -0.591 5.591 7 C 0.242 3.758 8 C -0.546 4.546 9 H 0.055 0.945 10 C 0.029 3.971 11 N -0.916 5.916 12 Si 0.950 3.050 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.198 3.802 17 C -0.039 4.039 18 C -0.208 4.208 19 C -0.223 4.223 20 C -0.045 4.045 21 O -0.186 6.186 22 N -0.538 5.538 23 C 0.036 3.964 24 C -0.054 4.054 25 S -0.303 6.303 26 C -0.061 4.061 27 C 0.054 3.946 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.019 0.981 32 H 0.051 0.949 33 H 0.267 0.733 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.148 0.852 37 H 0.171 0.829 38 H 0.237 0.763 39 H 0.039 0.961 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.086 0.914 44 H 0.129 0.871 45 H 0.092 0.908 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 -9.769 3.945 10.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.029 4.029 3 H 0.124 0.876 4 C 0.311 3.689 5 O -0.441 6.441 6 N -0.321 5.321 7 C 0.122 3.878 8 C -0.585 4.585 9 H 0.073 0.927 10 C -0.172 4.172 11 N -0.555 5.555 12 Si 0.776 3.224 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.075 3.925 17 C -0.091 4.091 18 C -0.228 4.228 19 C -0.242 4.242 20 C -0.113 4.113 21 O -0.082 6.082 22 N -0.263 5.263 23 C -0.093 4.093 24 C -0.203 4.203 25 S -0.077 6.077 26 C -0.210 4.210 27 C -0.075 4.075 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.165 0.835 37 H 0.189 0.811 38 H 0.253 0.747 39 H 0.057 0.943 40 H 0.130 0.870 41 H 0.097 0.903 42 H 0.133 0.867 43 H 0.105 0.895 44 H 0.147 0.853 45 H 0.111 0.889 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.198 -10.849 5.135 12.063 hybrid contribution -0.131 1.732 -1.484 2.285 sum -1.329 -9.117 3.651 9.911 Atomic orbital electron populations 1.22412 0.94336 1.02478 1.03981 1.21399 0.94887 0.98572 0.88039 0.87617 1.20651 0.77879 0.85399 0.85008 1.90428 1.47512 1.20326 1.85790 1.48239 1.57071 1.20841 1.05908 1.19434 0.92806 0.77482 0.98118 1.21627 0.94049 0.91481 1.51339 0.92695 1.25527 0.96894 1.00409 0.94383 1.69986 1.16512 1.19307 1.49714 0.85728 0.79417 0.78401 0.78855 1.19895 1.20980 1.19745 1.19680 0.92297 0.92207 0.88292 1.23020 1.02725 0.83089 1.00230 1.21872 0.98334 1.00884 1.01752 1.22120 1.04538 0.92574 1.04995 1.24834 0.90005 1.01206 0.95217 1.84096 1.45819 1.23051 1.55268 1.61043 1.61646 1.02397 1.01231 1.22718 0.95661 0.88202 1.02687 1.23378 1.03424 1.01781 0.91706 1.86703 1.93353 1.09856 1.17823 1.23493 1.03385 0.92592 1.01514 1.22281 0.97779 0.99031 0.88385 0.92165 0.90054 0.91499 0.96308 0.93096 0.92363 0.86574 0.90012 0.83466 0.81107 0.74696 0.94304 0.87030 0.90289 0.86730 0.89490 0.85335 0.88937 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.47 8.19 71.98 0.59 -4.88 16 2 C 0.08 2.87 1.90 44.17 0.08 2.95 16 3 H 0.11 4.07 7.28 -2.39 -0.02 4.05 16 4 C 0.52 20.59 6.74 87.66 0.59 21.18 16 5 O -0.56 -23.42 13.04 -3.01 -0.04 -23.46 16 6 N -0.59 -23.66 2.45 -830.49 -2.04 -25.70 16 7 C 0.24 10.76 4.61 85.63 0.39 11.15 16 8 C -0.55 -26.58 9.19 25.60 0.24 -26.34 16 9 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 10 C 0.03 1.43 5.46 84.65 0.46 1.89 16 11 N -0.92 -47.75 13.29 21.45 0.28 -47.46 16 12 Si 0.95 39.89 29.54 68.60 2.03 41.92 16 13 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 14 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 16 C 0.20 7.27 5.88 85.63 0.50 7.77 16 17 C -0.04 -1.38 6.86 24.83 0.17 -1.21 16 18 C -0.21 -6.66 10.81 22.19 0.24 -6.42 16 19 C -0.22 -5.87 10.91 22.19 0.24 -5.62 16 20 C -0.05 -1.16 12.09 66.96 0.81 -0.35 16 21 O -0.19 -6.36 10.65 -2.45 -0.03 -6.39 16 22 N -0.54 -16.80 4.29 -876.66 -3.76 -20.56 16 23 C 0.04 1.08 4.05 86.47 0.35 1.43 16 24 C -0.05 -1.47 6.69 72.07 0.48 -0.99 16 25 S -0.30 -7.77 22.40 -56.49 -1.27 -9.03 16 26 C -0.06 -1.41 6.69 72.07 0.48 -0.93 16 27 C 0.05 1.39 4.65 86.47 0.40 1.79 16 28 H 0.06 1.82 6.51 -2.39 -0.02 1.81 16 29 H 0.08 2.26 7.28 -2.39 -0.02 2.25 16 30 H 0.07 2.36 5.60 -2.39 -0.01 2.34 16 31 H 0.02 0.90 8.11 -2.39 -0.02 0.88 16 32 H 0.05 2.31 4.14 -2.38 -0.01 2.30 16 33 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 34 H 0.12 4.06 8.03 -2.39 -0.02 4.04 16 35 H 0.08 3.01 7.63 -2.39 -0.02 2.99 16 36 H 0.15 4.60 8.06 -2.91 -0.02 4.57 16 37 H 0.17 3.40 8.06 -2.91 -0.02 3.37 16 38 H 0.24 3.72 8.06 -2.91 -0.02 3.70 16 39 H 0.04 1.13 6.96 -2.39 -0.02 1.12 16 40 H 0.11 3.98 4.62 -17.06 -0.08 3.90 16 41 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.09 2.29 7.83 -2.39 -0.02 2.27 16 46 H 0.05 1.33 7.31 -2.38 -0.02 1.31 16 Total: -1.00 -58.14 375.88 2.14 -56.00 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.92 Total: 33.25 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 6.04 Total: 1.43 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -5.51 Total: -93.72 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.07 Total: -29.85 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Atomic # 16 Polarization: -7.77 SS G_CDS: -1.27 Total: -9.03 kcal Total: -58.14 2.14 -56.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269692745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.019 kcal (2) G-P(sol) polarization free energy of solvation -58.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds