Wall clock time and date at job start Tue Mar 31 2020 20:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47202 * 2 1 4 4 C 1.50696 * 109.46908 * 239.99922 * 2 1 3 5 5 H 1.07996 * 120.00258 * 239.99831 * 4 2 1 6 6 C 1.37880 * 120.00074 * 60.00448 * 4 2 1 7 7 N 1.31521 * 119.99949 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00158 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46935 * 89.99918 * 8 6 4 10 10 H 1.48499 * 109.47084 * 210.00014 * 8 6 4 11 11 H 1.48494 * 109.46925 * 329.99642 * 8 6 4 12 12 N 1.46499 * 109.46868 * 120.00366 * 2 1 3 13 13 C 1.46499 * 120.00225 * 59.99572 * 12 2 1 14 14 S 1.65600 * 119.99691 * 239.99718 * 12 2 1 15 15 O 1.42102 * 106.40015 * 23.54405 * 14 12 2 16 16 O 1.42097 * 106.40174 * 156.45969 * 14 12 2 17 17 N 1.65599 * 107.22069 * 270.00182 * 14 12 2 18 18 C 1.46493 * 120.00048 * 64.99840 * 17 14 12 19 19 H 1.09003 * 109.67806 * 335.51699 * 18 17 14 20 20 C 1.53328 * 109.68494 * 215.00582 * 18 17 14 21 21 C 1.52725 * 108.38910 * 170.41048 * 20 18 17 22 22 C 1.50630 * 110.59499 * 51.09732 * 21 20 18 23 23 C 1.38907 * 117.75924 * 162.27619 * 22 21 20 24 24 C 1.37931 * 120.54748 * 179.76610 * 23 22 21 25 25 C 1.38265 * 119.76921 * 359.95679 * 24 23 22 26 26 C 1.37926 * 119.77254 * 0.12075 * 25 24 23 27 27 C 1.37660 * 122.55953 * 342.22652 * 22 21 20 28 28 C 1.50630 * 122.56434 * 0.72686 * 27 22 21 29 29 H 1.09002 * 109.46830 * 59.99794 * 1 2 3 30 30 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47040 * 300.00243 * 1 2 3 32 32 H 0.96995 * 120.00084 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47391 * 270.00005 * 13 12 2 34 34 H 1.09001 * 109.46813 * 150.00061 * 13 12 2 35 35 H 1.09004 * 109.47041 * 30.00189 * 13 12 2 36 36 H 0.97004 * 119.99974 * 245.00532 * 17 14 12 37 37 H 1.09006 * 109.67602 * 290.13191 * 20 18 17 38 38 H 1.09001 * 109.68087 * 50.63943 * 20 18 17 39 39 H 1.09001 * 109.25587 * 171.38957 * 21 20 18 40 40 H 1.09005 * 109.25370 * 290.84796 * 21 20 18 41 41 H 1.08001 * 119.72463 * 359.77860 * 23 22 21 42 42 H 1.07997 * 120.11428 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.10917 * 180.09903 * 25 24 23 44 44 H 1.08004 * 119.72491 * 180.02562 * 26 25 24 45 45 H 1.09001 * 109.25769 * 221.92392 * 28 27 22 46 46 H 1.09008 * 109.25217 * 102.49958 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4873 -0.1402 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 2.6903 1.4972 2.1193 16 8 2.8227 -0.5647 3.5258 17 7 4.5438 -0.1043 1.8180 18 6 5.0139 0.4529 0.5474 19 1 4.1711 0.5797 -0.1321 20 6 6.0457 -0.4917 -0.0805 21 6 6.3360 -0.0122 -1.5012 22 6 6.6761 1.4551 -1.5061 23 6 7.3225 1.9657 -2.6246 24 6 7.6566 3.3023 -2.6920 25 6 7.3451 4.1417 -1.6385 26 6 6.7048 3.6364 -0.5263 27 6 6.3703 2.2900 -0.4552 28 6 5.6843 1.8028 0.7942 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7088 1.1614 -3.4843 33 1 0.7375 -2.1444 1.9993 34 1 2.4628 -2.5819 1.9863 35 1 1.5294 -2.5969 0.4707 36 1 5.1540 -0.6013 2.3851 37 1 6.9636 -0.4755 0.5072 38 1 5.6459 -1.5053 -0.1089 39 1 7.1754 -0.5771 -1.9067 40 1 5.4567 -0.1789 -2.1236 41 1 7.5653 1.3108 -3.4483 42 1 8.1594 3.6917 -3.5648 43 1 7.6027 5.1895 -1.6861 44 1 6.4615 4.2929 0.2961 45 1 4.9296 2.5290 1.0964 46 1 6.4207 1.6981 1.5911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282422901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:10 Heat of formation + Delta-G solvation = -83.777551 kcal Electronic energy + Delta-G solvation = -29174.742937 eV Core-core repulsion = 25382.379066 eV Total energy + Delta-G solvation = -3792.363871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94685 -38.41411 -37.89789 -37.73254 -36.88344 -34.46911 -34.33102 -33.08375 -30.90107 -30.37042 -29.03749 -27.24563 -26.97738 -24.54151 -23.41930 -23.00627 -22.55896 -20.76302 -20.16732 -18.69279 -18.32986 -18.27203 -17.58832 -17.08873 -16.71772 -16.39419 -16.08902 -15.56960 -15.19932 -15.11145 -14.88075 -14.66301 -14.50364 -14.22287 -13.95978 -13.71921 -13.67851 -13.39718 -13.36911 -13.20579 -13.14468 -12.99130 -12.91888 -12.72662 -12.65153 -12.58853 -12.26004 -12.23760 -12.09325 -11.88369 -11.79704 -11.60511 -11.45961 -11.13067 -10.47010 -10.42058 -9.64899 -9.60444 -9.38751 -8.05102 -6.18992 -0.28438 0.51306 0.52477 1.46199 1.48805 1.56718 2.01627 2.47857 2.63109 2.89352 3.24208 3.44345 3.71546 3.77709 3.96502 4.10121 4.13374 4.15059 4.29284 4.30977 4.44354 4.53013 4.61972 4.71601 4.73149 4.75766 4.82267 4.95836 4.97861 4.99962 5.00940 5.07847 5.17112 5.17810 5.23057 5.28169 5.34228 5.44397 5.63761 5.65859 5.66393 5.71286 5.81169 5.86626 6.09675 6.19153 6.26249 6.33101 6.90083 7.50498 8.99407 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009456 B = 0.006130 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.451342 B = 4566.431020 C = 6338.984635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.274 3.726 3 H 0.023 0.977 4 C -0.519 4.519 5 H 0.073 0.927 6 C 0.022 3.978 7 N -0.917 5.917 8 Si 0.945 3.055 9 H -0.281 1.281 10 H -0.294 1.294 11 H -0.254 1.254 12 N -0.997 5.997 13 C 0.101 3.899 14 S 2.794 3.206 15 O -1.015 7.015 16 O -1.010 7.010 17 N -1.107 6.107 18 C 0.153 3.847 19 H 0.076 0.924 20 C -0.109 4.109 21 C -0.082 4.082 22 C -0.089 4.089 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.129 4.129 26 C -0.135 4.135 27 C -0.087 4.087 28 C -0.095 4.095 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.015 0.985 32 H 0.261 0.739 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.424 0.576 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.136 0.864 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.127 0.873 45 H 0.062 0.938 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.079 -1.824 2.119 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.170 3.830 3 H 0.041 0.959 4 C -0.559 4.559 5 H 0.091 0.909 6 C -0.178 4.178 7 N -0.556 5.556 8 Si 0.771 3.229 9 H -0.207 1.207 10 H -0.220 1.220 11 H -0.177 1.177 12 N -0.839 5.839 13 C -0.045 4.045 14 S 2.803 3.197 15 O -0.999 6.999 16 O -0.994 6.994 17 N -0.868 5.868 18 C 0.045 3.955 19 H 0.094 0.906 20 C -0.148 4.148 21 C -0.119 4.119 22 C -0.089 4.089 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.153 4.153 27 C -0.088 4.088 28 C -0.134 4.134 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.260 0.740 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.160 0.840 44 H 0.145 0.855 45 H 0.081 0.919 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.559 -1.126 2.670 13.865 hybrid contribution -0.032 -0.339 -0.983 1.040 sum 13.527 -1.465 1.688 13.710 Atomic orbital electron populations 1.21960 0.98264 0.99994 0.99764 1.18407 0.91741 0.91325 0.81545 0.95886 1.21535 1.31311 1.12900 0.90104 0.90879 1.25598 0.95210 0.95434 1.01560 1.70019 1.37521 1.24018 1.24052 0.85749 0.79580 0.78181 0.79392 1.20687 1.22002 1.17731 1.57595 1.65131 1.22501 1.38654 1.21376 1.00362 0.80435 1.02299 1.01275 0.73316 0.72863 0.72212 1.93543 1.84800 1.34698 1.86835 1.93524 1.86529 1.76139 1.43216 1.55680 1.29308 1.70407 1.31450 1.20750 0.98264 0.92858 0.83594 0.90629 1.21745 0.98608 0.98950 0.95508 1.20502 1.02312 0.91436 0.97657 1.19870 0.98491 0.96348 0.94162 1.21424 0.99239 0.96561 0.97699 1.21376 1.00372 0.93529 0.99360 1.21336 0.98989 1.00781 0.93610 1.21380 0.99687 0.94699 0.99510 1.19673 0.99115 0.94196 0.95819 1.20952 0.99475 0.97026 0.95920 0.91236 0.93743 0.96591 0.93008 0.93289 0.90593 0.90273 0.74012 0.89273 0.89849 0.88151 0.91767 0.84624 0.83790 0.83973 0.85533 0.91924 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.69 8.97 71.98 0.65 -6.04 16 2 C 0.27 13.10 1.93 44.25 0.09 13.19 16 3 H 0.02 1.28 6.74 -2.39 -0.02 1.26 16 4 C -0.52 -25.05 7.35 25.60 0.19 -24.86 16 5 H 0.07 3.33 7.33 -2.91 -0.02 3.31 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.92 -50.13 11.32 21.45 0.24 -49.88 16 8 Si 0.94 39.89 29.54 68.60 2.03 41.92 16 9 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 10 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 12 N -1.00 -39.86 3.12 -520.44 -1.62 -41.48 16 13 C 0.10 3.35 9.28 127.77 1.19 4.54 16 14 S 2.79 106.99 6.00 -56.49 -0.34 106.66 16 15 O -1.02 -46.67 16.25 -128.00 -2.08 -48.75 16 16 O -1.01 -39.82 17.21 -128.00 -2.20 -42.03 16 17 N -1.11 -32.92 5.55 -169.31 -0.94 -33.86 16 18 C 0.15 4.82 2.71 45.01 0.12 4.95 16 19 H 0.08 3.04 6.38 -2.39 -0.02 3.02 16 20 C -0.11 -2.73 5.52 30.61 0.17 -2.56 16 21 C -0.08 -2.16 5.67 29.73 0.17 -1.99 16 22 C -0.09 -2.54 5.74 -19.86 -0.11 -2.66 16 23 C -0.13 -3.33 9.61 22.36 0.21 -3.11 16 24 C -0.13 -2.96 10.05 22.20 0.22 -2.73 16 25 C -0.13 -3.07 10.05 22.20 0.22 -2.85 16 26 C -0.13 -3.70 9.61 22.36 0.21 -3.49 16 27 C -0.09 -2.63 5.74 -19.86 -0.11 -2.74 16 28 C -0.09 -2.90 5.28 29.74 0.16 -2.74 16 29 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 30 H 0.04 1.95 7.67 -2.39 -0.02 1.93 16 31 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 2.11 7.79 -2.39 -0.02 2.09 16 35 H 0.08 2.64 7.02 -2.38 -0.02 2.62 16 36 H 0.42 9.56 8.84 -96.74 -0.86 8.71 16 37 H 0.09 1.79 8.10 -2.38 -0.02 1.77 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 39 H 0.10 2.07 8.12 -2.39 -0.02 2.06 16 40 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.14 2.84 8.05 -2.91 -0.02 2.81 16 42 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 43 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 44 H 0.13 3.14 8.05 -2.91 -0.02 3.11 16 45 H 0.06 2.20 7.91 -2.39 -0.02 2.18 16 46 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -65.15 376.34 -0.97 -66.12 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.13 Total: 32.86 kcal Atomic # 6 Polarization: -35.38 SS G_CDS: 3.82 Total: -31.56 kcal Atomic # 7 Polarization: -122.90 SS G_CDS: -2.32 Total: -125.22 kcal Atomic # 8 Polarization: -86.50 SS G_CDS: -4.28 Total: -90.78 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Atomic # 16 Polarization: 106.99 SS G_CDS: -0.34 Total: 106.66 kcal Total: -65.15 -0.97 -66.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282422901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.657 kcal (2) G-P(sol) polarization free energy of solvation -65.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds