Wall clock time and date at job start Tue Mar 31 2020 20:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47139 * 2 1 4 4 C 1.50703 * 109.46890 * 119.99212 * 2 1 3 5 5 H 1.08002 * 119.99234 * 120.00432 * 4 2 1 6 6 C 1.37868 * 120.00356 * 300.00411 * 4 2 1 7 7 N 1.31519 * 120.00028 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00010 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47299 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47076 * 120.00099 * 8 6 4 11 11 H 1.48502 * 109.47473 * 240.00046 * 8 6 4 12 12 N 1.46494 * 109.47501 * 239.99601 * 2 1 3 13 13 C 1.46500 * 120.00138 * 300.00371 * 12 2 1 14 14 S 1.65606 * 120.00140 * 120.00056 * 12 2 1 15 15 O 1.42098 * 106.40303 * 156.45901 * 14 12 2 16 16 O 1.42096 * 106.40064 * 23.53873 * 14 12 2 17 17 N 1.65601 * 107.21427 * 270.00066 * 14 12 2 18 18 C 1.46497 * 120.00058 * 65.00206 * 17 14 12 19 19 H 1.08996 * 109.70795 * 334.46316 * 18 17 14 20 20 C 1.53325 * 109.68083 * 213.93544 * 18 17 14 21 21 C 1.52729 * 108.39190 * 170.43082 * 20 18 17 22 22 C 1.50630 * 110.65319 * 50.91381 * 21 20 18 23 23 C 1.38912 * 117.75709 * 162.13691 * 22 21 20 24 24 C 1.37936 * 120.54395 * 179.64528 * 23 22 21 25 25 C 1.38264 * 119.76978 * 0.29383 * 24 23 22 26 26 C 1.37941 * 119.77356 * 0.14228 * 25 24 23 27 27 C 1.37664 * 122.55969 * 342.60402 * 22 21 20 28 28 C 1.50635 * 122.56549 * 0.31111 * 27 22 21 29 29 H 1.08995 * 109.47894 * 300.00038 * 1 2 3 30 30 H 1.09003 * 109.47110 * 60.01029 * 1 2 3 31 31 H 1.09002 * 109.47139 * 180.02562 * 1 2 3 32 32 H 0.97001 * 120.00038 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.46840 * 269.99835 * 13 12 2 34 34 H 1.08992 * 109.47503 * 29.99345 * 13 12 2 35 35 H 1.08999 * 109.47218 * 150.00151 * 13 12 2 36 36 H 0.96996 * 119.99971 * 244.99348 * 17 14 12 37 37 H 1.09008 * 109.67627 * 290.15424 * 20 18 17 38 38 H 1.08995 * 109.67718 * 50.66680 * 20 18 17 39 39 H 1.08999 * 109.25388 * 171.42148 * 21 20 18 40 40 H 1.09000 * 109.25498 * 290.88744 * 21 20 18 41 41 H 1.08002 * 119.73195 * 359.92818 * 23 22 21 42 42 H 1.07996 * 120.11480 * 180.27672 * 24 23 22 43 43 H 1.07994 * 120.11418 * 180.11734 * 25 24 23 44 44 H 1.08000 * 119.73058 * 179.91819 * 26 25 24 45 45 H 1.08997 * 109.25163 * 102.71247 * 28 27 22 46 46 H 1.09000 * 109.25511 * 222.17928 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5883 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 0.9426 0.8298 2.6033 8 14 2.3212 -1.1201 4.0081 9 1 3.1453 -2.2874 3.6040 10 1 3.1464 -0.1870 4.8166 11 1 1.1659 -1.5864 4.8162 12 7 2.0184 -0.6906 -1.1960 13 6 1.6645 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 3.7120 -0.8790 -2.9812 16 8 3.5794 1.1829 -1.5748 17 7 1.9608 0.8088 -3.3998 18 6 1.0292 1.8616 -2.9876 19 1 0.8003 1.7554 -1.9272 20 6 -0.2623 1.7583 -3.8074 21 6 -1.2963 2.7034 -3.1989 22 6 -0.7166 4.0824 -3.0222 23 6 -1.6016 5.1385 -2.8456 24 6 -1.1331 6.4240 -2.6712 25 6 0.2283 6.6654 -2.6783 26 6 1.1085 5.6194 -2.8625 27 6 0.6385 4.3243 -3.0398 28 6 1.6547 3.2312 -3.2440 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 0.7079 1.1611 3.4843 33 1 2.4158 -2.7377 -0.9714 34 1 0.6906 -2.3003 -0.9845 35 1 1.6240 -2.2853 -2.5000 36 1 1.9862 0.5187 -4.3250 37 1 -0.0654 2.0457 -4.8403 38 1 -0.6361 0.7350 -3.7760 39 1 -2.1646 2.7571 -3.8555 40 1 -1.6046 2.3206 -2.2260 41 1 -2.6652 4.9508 -2.8401 42 1 -1.8272 7.2392 -2.5300 43 1 0.6013 7.6695 -2.5404 44 1 2.1717 5.8089 -2.8692 45 1 2.0246 3.2713 -4.2685 46 1 2.4864 3.3805 -2.5555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282422905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:14 Heat of formation + Delta-G solvation = -63.010904 kcal Electronic energy + Delta-G solvation = -28781.615733 eV Core-core repulsion = 24990.152372 eV Total energy + Delta-G solvation = -3791.463361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.02741 -37.05877 -36.50825 -36.14672 -35.20239 -33.32625 -32.57828 -32.10514 -29.47153 -29.10795 -28.02566 -25.59869 -25.16046 -23.60686 -22.42665 -22.08450 -20.79795 -19.66262 -18.72073 -17.28167 -16.83087 -16.56566 -16.22924 -15.96388 -15.45660 -15.09214 -14.71778 -14.38198 -14.06917 -13.78106 -13.52005 -13.30079 -13.19131 -13.06189 -12.83090 -12.70149 -12.32090 -12.01778 -11.79160 -11.75656 -11.61582 -11.49065 -11.41430 -11.31826 -11.21669 -11.01836 -10.83485 -10.81333 -10.64290 -10.47260 -10.42785 -10.27641 -10.01472 -9.33167 -9.22765 -8.68453 -8.46625 -8.45490 -7.98157 -6.07583 -4.13821 1.21442 1.43233 1.44125 3.27781 3.36186 3.40214 3.50014 3.80884 4.11187 4.40316 4.64656 4.73433 4.82359 4.99332 5.01499 5.10866 5.15489 5.20656 5.24073 5.39002 5.42996 5.55352 5.61140 5.61932 5.73857 5.83626 5.95522 5.98455 6.06256 6.11354 6.14974 6.29062 6.32386 6.40995 6.55537 6.57605 6.61100 6.73939 6.75953 6.77821 6.97711 7.08120 7.18201 7.48561 7.62879 7.78282 8.03191 8.27105 8.88664 9.52160 10.98046 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011323 B = 0.004462 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.266418 B = 6273.621133 C = 7541.328956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.266 3.734 3 H 0.059 0.941 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.991 5.991 13 C 0.111 3.889 14 S 2.777 3.223 15 O -0.998 6.998 16 O -0.972 6.972 17 N -1.129 6.129 18 C 0.154 3.846 19 H 0.100 0.900 20 C -0.121 4.121 21 C -0.081 4.081 22 C -0.076 4.076 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.065 4.065 28 C -0.101 4.101 29 H 0.093 0.907 30 H 0.012 0.988 31 H 0.034 0.966 32 H 0.262 0.738 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.408 0.592 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.079 0.921 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.425 6.156 -13.831 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.163 3.837 3 H 0.076 0.924 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.834 5.834 13 C -0.035 4.035 14 S 2.786 3.214 15 O -0.982 6.982 16 O -0.955 6.955 17 N -0.886 5.886 18 C 0.046 3.954 19 H 0.118 0.882 20 C -0.160 4.160 21 C -0.118 4.118 22 C -0.076 4.076 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.135 4.135 27 C -0.066 4.066 28 C -0.140 4.140 29 H 0.112 0.888 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.240 0.760 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.097 0.903 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.529 6.374 -13.483 15.906 hybrid contribution -0.139 -0.479 0.578 0.764 sum -5.668 5.895 -12.905 15.278 Atomic orbital electron populations 1.22181 0.98328 0.99837 1.00628 1.18756 0.91231 0.92971 0.80714 0.92357 1.21358 1.31486 1.12973 0.90004 0.91916 1.24898 0.94974 0.94997 0.98981 1.69863 1.36577 1.22712 1.23667 0.86458 0.78605 0.79696 0.82756 1.19742 1.20914 1.21016 1.57691 1.70071 1.19890 1.35718 1.21123 1.01640 0.82011 0.98763 1.02041 0.73594 0.73213 0.72582 1.93545 1.69670 1.60177 1.74850 1.93600 1.73771 1.55761 1.72406 1.56294 1.57244 1.51148 1.23885 1.20741 0.88414 0.85893 1.00309 0.88241 1.21826 0.94585 1.00179 0.99398 1.20478 0.97917 0.91290 1.02157 1.19632 0.92642 0.95443 0.99898 1.21110 0.99287 0.92550 1.00857 1.21016 0.95597 0.96762 1.01013 1.21028 0.93517 0.98851 1.00813 1.21178 0.99858 0.92292 1.00203 1.19554 0.93261 0.94485 0.99316 1.21050 0.97651 0.92241 1.03040 0.88808 0.96914 0.94684 0.92770 0.93331 0.90992 0.93328 0.75976 0.91308 0.90443 0.90471 0.89741 0.86299 0.86377 0.86312 0.86107 0.90264 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.83 37.16 0.33 -2.93 16 2 C 0.27 6.33 1.92 -69.09 -0.13 6.20 16 3 H 0.06 1.55 6.76 -51.93 -0.35 1.19 16 4 C -0.52 -13.82 8.37 -34.44 -0.29 -14.11 16 5 H 0.06 1.68 7.65 -52.49 -0.40 1.28 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.44 11.32 55.43 0.63 -23.81 16 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.99 -20.14 3.12 -115.86 -0.36 -20.50 16 13 C 0.11 1.95 9.53 59.85 0.57 2.52 16 14 S 2.78 53.54 6.01 -107.50 -0.65 52.89 16 15 O -1.00 -20.59 17.21 -57.17 -0.98 -21.58 16 16 O -0.97 -22.21 16.14 -57.17 -0.92 -23.14 16 17 N -1.13 -16.16 5.55 -4.87 -0.03 -16.19 16 18 C 0.15 2.19 2.70 -67.90 -0.18 2.00 16 19 H 0.10 1.68 5.47 -51.93 -0.28 1.40 16 20 C -0.12 -1.34 5.52 -26.70 -0.15 -1.49 16 21 C -0.08 -0.90 5.67 -28.06 -0.16 -1.06 16 22 C -0.08 -0.97 5.74 -104.62 -0.60 -1.57 16 23 C -0.12 -1.39 9.61 -39.44 -0.38 -1.77 16 24 C -0.13 -1.40 10.05 -39.68 -0.40 -1.80 16 25 C -0.12 -1.43 10.05 -39.68 -0.40 -1.83 16 26 C -0.12 -1.50 9.61 -39.44 -0.38 -1.88 16 27 C -0.07 -0.89 5.74 -104.61 -0.60 -1.49 16 28 C -0.10 -1.41 5.29 -28.05 -0.15 -1.56 16 29 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 30 H 0.01 0.23 6.72 -51.93 -0.35 -0.12 16 31 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 35 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 36 H 0.41 4.63 8.83 -34.47 -0.30 4.33 16 37 H 0.07 0.67 8.10 -51.92 -0.42 0.25 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.12 1.12 8.05 -52.49 -0.42 0.70 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.12 1.39 8.05 -52.49 -0.42 0.97 16 45 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.09 1.46 7.80 -51.93 -0.41 1.06 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -32.00 373.62 -11.57 -43.57 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.85 Total: 6.22 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -3.01 Total: -19.15 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.24 Total: -60.50 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -1.91 Total: -44.71 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 53.54 SS G_CDS: -0.65 Total: 52.89 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.00 -11.57 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282422905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.441 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds