Wall clock time and date at job start Tue Mar 31 2020 20:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47139 * 2 1 4 4 C 1.50703 * 109.46890 * 119.99212 * 2 1 3 5 5 H 1.08002 * 119.99234 * 120.00432 * 4 2 1 6 6 C 1.37868 * 120.00356 * 300.00411 * 4 2 1 7 7 N 1.31519 * 120.00028 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00010 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47299 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47076 * 120.00099 * 8 6 4 11 11 H 1.48502 * 109.47473 * 240.00046 * 8 6 4 12 12 N 1.46494 * 109.47501 * 239.99601 * 2 1 3 13 13 C 1.46500 * 120.00138 * 300.00371 * 12 2 1 14 14 S 1.65606 * 120.00140 * 120.00056 * 12 2 1 15 15 O 1.42098 * 106.40303 * 156.45901 * 14 12 2 16 16 O 1.42096 * 106.40064 * 23.53873 * 14 12 2 17 17 N 1.65601 * 107.21427 * 270.00066 * 14 12 2 18 18 C 1.46497 * 120.00058 * 65.00206 * 17 14 12 19 19 H 1.08996 * 109.70795 * 334.46316 * 18 17 14 20 20 C 1.53325 * 109.68083 * 213.93544 * 18 17 14 21 21 C 1.52729 * 108.39190 * 170.43082 * 20 18 17 22 22 C 1.50630 * 110.65319 * 50.91381 * 21 20 18 23 23 C 1.38912 * 117.75709 * 162.13691 * 22 21 20 24 24 C 1.37936 * 120.54395 * 179.64528 * 23 22 21 25 25 C 1.38264 * 119.76978 * 0.29383 * 24 23 22 26 26 C 1.37941 * 119.77356 * 0.14228 * 25 24 23 27 27 C 1.37664 * 122.55969 * 342.60402 * 22 21 20 28 28 C 1.50635 * 122.56549 * 0.31111 * 27 22 21 29 29 H 1.08995 * 109.47894 * 300.00038 * 1 2 3 30 30 H 1.09003 * 109.47110 * 60.01029 * 1 2 3 31 31 H 1.09002 * 109.47139 * 180.02562 * 1 2 3 32 32 H 0.97001 * 120.00038 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.46840 * 269.99835 * 13 12 2 34 34 H 1.08992 * 109.47503 * 29.99345 * 13 12 2 35 35 H 1.08999 * 109.47218 * 150.00151 * 13 12 2 36 36 H 0.96996 * 119.99971 * 244.99348 * 17 14 12 37 37 H 1.09008 * 109.67627 * 290.15424 * 20 18 17 38 38 H 1.08995 * 109.67718 * 50.66680 * 20 18 17 39 39 H 1.08999 * 109.25388 * 171.42148 * 21 20 18 40 40 H 1.09000 * 109.25498 * 290.88744 * 21 20 18 41 41 H 1.08002 * 119.73195 * 359.92818 * 23 22 21 42 42 H 1.07996 * 120.11480 * 180.27672 * 24 23 22 43 43 H 1.07994 * 120.11418 * 180.11734 * 25 24 23 44 44 H 1.08000 * 119.73058 * 179.91819 * 26 25 24 45 45 H 1.08997 * 109.25163 * 102.71247 * 28 27 22 46 46 H 1.09000 * 109.25511 * 222.17928 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5883 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 0.9426 0.8298 2.6033 8 14 2.3212 -1.1201 4.0081 9 1 3.1453 -2.2874 3.6040 10 1 3.1464 -0.1870 4.8166 11 1 1.1659 -1.5864 4.8162 12 7 2.0184 -0.6906 -1.1960 13 6 1.6645 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 3.7120 -0.8790 -2.9812 16 8 3.5794 1.1829 -1.5748 17 7 1.9608 0.8088 -3.3998 18 6 1.0292 1.8616 -2.9876 19 1 0.8003 1.7554 -1.9272 20 6 -0.2623 1.7583 -3.8074 21 6 -1.2963 2.7034 -3.1989 22 6 -0.7166 4.0824 -3.0222 23 6 -1.6016 5.1385 -2.8456 24 6 -1.1331 6.4240 -2.6712 25 6 0.2283 6.6654 -2.6783 26 6 1.1085 5.6194 -2.8625 27 6 0.6385 4.3243 -3.0398 28 6 1.6547 3.2312 -3.2440 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 0.7079 1.1611 3.4843 33 1 2.4158 -2.7377 -0.9714 34 1 0.6906 -2.3003 -0.9845 35 1 1.6240 -2.2853 -2.5000 36 1 1.9862 0.5187 -4.3250 37 1 -0.0654 2.0457 -4.8403 38 1 -0.6361 0.7350 -3.7760 39 1 -2.1646 2.7571 -3.8555 40 1 -1.6046 2.3206 -2.2260 41 1 -2.6652 4.9508 -2.8401 42 1 -1.8272 7.2392 -2.5300 43 1 0.6013 7.6695 -2.5404 44 1 2.1717 5.8089 -2.8692 45 1 2.0246 3.2713 -4.2685 46 1 2.4864 3.3805 -2.5555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282422905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:13 Heat of formation + Delta-G solvation = -83.684430 kcal Electronic energy + Delta-G solvation = -28782.512205 eV Core-core repulsion = 24990.152372 eV Total energy + Delta-G solvation = -3792.359833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.97097 -38.44391 -37.94621 -37.74117 -36.87965 -34.52358 -34.35250 -33.09429 -30.91634 -30.38302 -29.05465 -27.28261 -27.00561 -24.56110 -23.44368 -23.00534 -22.58923 -20.74480 -20.16005 -18.84946 -18.51057 -18.04806 -17.65081 -17.10881 -16.75956 -16.41924 -16.13727 -15.58953 -15.27724 -15.07117 -14.83520 -14.79626 -14.53454 -14.28235 -13.97820 -13.72478 -13.71460 -13.37856 -13.35723 -13.18403 -13.15719 -13.00296 -12.92737 -12.79188 -12.65401 -12.57228 -12.27034 -12.21049 -12.14991 -11.90224 -11.83206 -11.59170 -11.47853 -11.12514 -10.54391 -10.44928 -9.67213 -9.60045 -9.39325 -8.11448 -6.24559 -0.33227 0.51145 0.52605 1.40309 1.43612 1.53780 2.03274 2.43059 2.62574 2.89453 3.16902 3.41871 3.67895 3.74201 3.89560 4.08010 4.10591 4.11879 4.27304 4.30229 4.36079 4.51664 4.60349 4.69302 4.70003 4.73140 4.84361 4.96455 4.97370 5.01054 5.03028 5.07557 5.14374 5.16301 5.18322 5.21200 5.30631 5.42763 5.62520 5.65822 5.67037 5.72252 5.80195 5.89295 6.13027 6.19050 6.22805 6.32669 6.83072 7.44413 8.92494 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011323 B = 0.004462 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.266418 B = 6273.621133 C = 7541.328956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.274 3.726 3 H 0.023 0.977 4 C -0.538 4.538 5 H 0.054 0.946 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.952 3.048 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.997 5.997 13 C 0.104 3.896 14 S 2.792 3.208 15 O -1.011 7.011 16 O -1.014 7.014 17 N -1.107 6.107 18 C 0.151 3.849 19 H 0.070 0.930 20 C -0.113 4.113 21 C -0.080 4.080 22 C -0.090 4.090 23 C -0.127 4.127 24 C -0.129 4.129 25 C -0.131 4.131 26 C -0.138 4.138 27 C -0.088 4.088 28 C -0.098 4.098 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.426 0.574 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.122 0.878 45 H 0.096 0.904 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 5.921 -15.268 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.170 3.830 3 H 0.041 0.959 4 C -0.578 4.578 5 H 0.072 0.928 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.839 5.839 13 C -0.042 4.042 14 S 2.801 3.199 15 O -0.995 6.995 16 O -0.998 6.998 17 N -0.869 5.869 18 C 0.043 3.957 19 H 0.088 0.912 20 C -0.152 4.152 21 C -0.117 4.117 22 C -0.090 4.090 23 C -0.145 4.145 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.156 4.156 27 C -0.089 4.089 28 C -0.137 4.137 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.262 0.738 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.092 0.908 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.157 0.843 44 H 0.140 0.860 45 H 0.114 0.886 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.351 6.111 -14.941 17.738 hybrid contribution 0.447 -0.334 0.975 1.123 sum -6.904 5.777 -13.967 16.616 Atomic orbital electron populations 1.21950 0.96592 1.00329 1.00662 1.18399 0.92384 0.91095 0.81135 0.95938 1.21679 1.31556 1.12949 0.91586 0.92766 1.25593 0.95245 0.95692 1.01519 1.69980 1.37257 1.23615 1.24203 0.85597 0.78306 0.78594 0.79669 1.19553 1.21143 1.19883 1.57568 1.70041 1.21112 1.35194 1.21336 1.01675 0.80193 1.00957 1.01355 0.73548 0.72492 0.72519 1.93517 1.70468 1.60664 1.74900 1.93551 1.75213 1.57182 1.73822 1.55735 1.56516 1.50704 1.23927 1.20808 0.89873 0.85555 0.99417 0.91223 1.21824 0.92483 1.01150 0.99720 1.20529 0.98698 0.90223 1.02267 1.19903 0.92392 0.96746 0.99916 1.21451 1.00387 0.92442 1.00170 1.21401 0.95835 0.97559 0.99877 1.21333 0.93852 0.99458 1.00243 1.21375 1.00435 0.92751 1.01026 1.19650 0.93841 0.94538 1.00884 1.20973 0.97009 0.92567 1.03159 0.91581 0.94051 0.93771 0.92703 0.94280 0.90174 0.90052 0.73755 0.89271 0.89075 0.87602 0.90798 0.83997 0.83780 0.84319 0.86035 0.88563 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.88 8.83 71.98 0.64 -5.25 16 2 C 0.27 13.30 1.92 44.25 0.09 13.39 16 3 H 0.02 1.27 6.76 -2.39 -0.02 1.25 16 4 C -0.54 -29.21 8.37 25.60 0.21 -29.00 16 5 H 0.05 2.96 7.65 -2.91 -0.02 2.93 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -51.07 11.32 21.44 0.24 -50.82 16 8 Si 0.95 43.53 29.54 68.60 2.03 45.56 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 N -1.00 -40.53 3.12 -520.47 -1.62 -42.15 16 13 C 0.10 3.52 9.53 127.77 1.22 4.74 16 14 S 2.79 108.25 6.01 -56.49 -0.34 107.91 16 15 O -1.01 -41.09 17.21 -128.00 -2.20 -43.29 16 16 O -1.01 -48.33 16.14 -128.00 -2.07 -50.40 16 17 N -1.11 -30.58 5.55 -169.31 -0.94 -31.52 16 18 C 0.15 4.19 2.70 45.01 0.12 4.31 16 19 H 0.07 2.39 5.47 -2.39 -0.01 2.38 16 20 C -0.11 -2.22 5.52 30.61 0.17 -2.05 16 21 C -0.08 -1.59 5.67 29.74 0.17 -1.42 16 22 C -0.09 -2.16 5.74 -19.86 -0.11 -2.27 16 23 C -0.13 -2.67 9.61 22.36 0.21 -2.45 16 24 C -0.13 -2.60 10.05 22.20 0.22 -2.38 16 25 C -0.13 -2.89 10.05 22.21 0.22 -2.67 16 26 C -0.14 -3.57 9.61 22.36 0.21 -3.35 16 27 C -0.09 -2.41 5.74 -19.86 -0.11 -2.52 16 28 C -0.10 -2.78 5.29 29.74 0.16 -2.63 16 29 H 0.07 3.26 6.07 -2.39 -0.01 3.24 16 30 H 0.04 1.50 6.72 -2.39 -0.02 1.49 16 31 H 0.04 1.78 6.66 -2.39 -0.02 1.77 16 32 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 2.57 6.43 -2.39 -0.02 2.55 16 35 H 0.08 2.20 7.79 -2.39 -0.02 2.18 16 36 H 0.43 8.74 8.83 -96.75 -0.85 7.88 16 37 H 0.09 1.42 8.10 -2.38 -0.02 1.40 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.11 1.51 8.12 -2.39 -0.02 1.49 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.14 2.24 8.05 -2.91 -0.02 2.22 16 42 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 43 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.12 2.95 8.05 -2.91 -0.02 2.92 16 45 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.06 2.05 7.80 -2.39 -0.02 2.03 16 Total: -1.00 -70.72 373.62 -0.90 -71.62 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.13 Total: 25.13 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 3.87 Total: -32.03 kcal Atomic # 7 Polarization: -122.18 SS G_CDS: -2.32 Total: -124.50 kcal Atomic # 8 Polarization: -89.42 SS G_CDS: -4.27 Total: -93.69 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 108.25 SS G_CDS: -0.34 Total: 107.91 kcal Total: -70.72 -0.90 -71.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282422905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.062 kcal (2) G-P(sol) polarization free energy of solvation -70.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds