Wall clock time and date at job start Tue Mar 31 2020 20:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48495 * 109.46964 * 209.99990 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 S 1.65603 * 120.00110 * 119.99604 * 12 2 1 15 15 O 1.42103 * 106.39984 * 203.54254 * 14 12 2 16 16 O 1.42101 * 106.40348 * 336.46504 * 14 12 2 17 17 N 1.65604 * 107.21689 * 90.00259 * 14 12 2 18 18 C 1.46497 * 119.99842 * 64.99780 * 17 14 12 19 19 H 1.09002 * 109.67849 * 25.00121 * 18 17 14 20 20 C 1.53323 * 109.68176 * 145.51828 * 18 17 14 21 21 C 1.52730 * 108.38935 * 189.59203 * 20 18 17 22 22 C 1.50632 * 110.58968 * 308.90225 * 21 20 18 23 23 C 1.38918 * 117.75208 * 197.72604 * 22 21 20 24 24 C 1.37929 * 120.54227 * 180.23316 * 23 22 21 25 25 C 1.38269 * 119.77048 * 0.04008 * 24 23 22 26 26 C 1.37923 * 119.77464 * 359.87778 * 25 24 23 27 27 C 1.37656 * 122.56292 * 17.78430 * 22 21 20 28 28 C 1.50642 * 122.57791 * 359.28826 * 27 22 21 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 34 34 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 35 35 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 36 36 H 0.96995 * 119.99880 * 245.00500 * 17 14 12 37 37 H 1.09001 * 109.67879 * 309.31843 * 20 18 17 38 38 H 1.08999 * 109.68097 * 69.82734 * 20 18 17 39 39 H 1.09000 * 109.25496 * 69.18542 * 21 20 18 40 40 H 1.08999 * 109.25600 * 188.64794 * 21 20 18 41 41 H 1.08000 * 119.72601 * 0.26030 * 23 22 21 42 42 H 1.07999 * 120.11339 * 180.02562 * 24 23 22 43 43 H 1.08005 * 120.11063 * 179.85509 * 25 24 23 44 44 H 1.07998 * 119.73011 * 179.97438 * 26 25 24 45 45 H 1.09005 * 109.23371 * 257.46907 * 28 27 22 46 46 H 1.08999 * 109.28788 * 138.03486 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 2.8227 -0.5644 -3.5260 16 8 2.6904 1.4974 -2.1193 17 7 4.5438 -0.1041 -1.8181 18 6 5.1357 -1.4439 -1.8417 19 1 4.6112 -2.0642 -2.5684 20 6 6.6183 -1.3468 -2.2202 21 6 7.1451 -2.7584 -2.4707 22 6 6.8028 -3.6641 -1.3168 23 6 7.5097 -4.8539 -1.1966 24 6 7.2400 -5.7282 -0.1645 25 6 6.2576 -5.4191 0.7581 26 6 5.5558 -4.2376 0.6414 27 6 5.8278 -3.3543 -0.3957 28 6 5.0322 -2.0766 -0.4554 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 0.7096 1.1617 3.4844 33 1 0.7376 -2.1442 -1.9994 34 1 2.4629 -2.5818 -1.9864 35 1 1.5295 -2.5968 -0.4710 36 1 5.0733 0.6551 -1.5282 37 1 6.7278 -0.7482 -3.1245 38 1 7.1759 -0.8856 -1.4050 39 1 6.6965 -3.1528 -3.3825 40 1 8.2279 -2.7221 -2.5896 41 1 8.2770 -5.0960 -1.9170 42 1 7.7941 -6.6511 -0.0774 43 1 6.0403 -6.1009 1.5671 44 1 4.7883 -3.9971 1.3622 45 1 5.4175 -1.3786 0.2879 46 1 3.9866 -2.2930 -0.2363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282422908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:17 Heat of formation + Delta-G solvation = -64.988709 kcal Electronic energy + Delta-G solvation = -28996.087070 eV Core-core repulsion = 25204.537945 eV Total energy + Delta-G solvation = -3791.549126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.04565 -37.02904 -36.55836 -36.12610 -35.24982 -33.33379 -32.62240 -32.07245 -29.48219 -29.09837 -27.99750 -25.51131 -25.21743 -23.60349 -22.42644 -22.08438 -20.79688 -19.66284 -18.77766 -17.18996 -16.86356 -16.53154 -16.27315 -15.92177 -15.46370 -15.21803 -14.70563 -14.44354 -14.08370 -13.73681 -13.49392 -13.33130 -13.18312 -12.98296 -12.85587 -12.67786 -12.36670 -11.99499 -11.81089 -11.76331 -11.57209 -11.51375 -11.38568 -11.35878 -11.22450 -11.00825 -10.92278 -10.88500 -10.65038 -10.55262 -10.43215 -10.20619 -10.08173 -9.30999 -9.17823 -8.70747 -8.50304 -8.48087 -7.97002 -6.11599 -4.19853 1.25712 1.39970 1.42498 3.21407 3.29058 3.29739 3.47167 3.78825 4.14125 4.32395 4.59119 4.72928 4.81158 4.97091 5.01192 5.04712 5.10964 5.19393 5.25129 5.36467 5.39899 5.54041 5.55493 5.61984 5.79681 5.86206 5.94086 5.99984 6.04747 6.09491 6.15791 6.28414 6.35607 6.46367 6.53296 6.59513 6.64149 6.75671 6.87091 6.87849 7.06885 7.11576 7.25304 7.52503 7.61844 7.77280 8.03735 8.24118 8.82765 9.46282 10.93466 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009828 B = 0.005645 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.271718 B = 4958.724970 C = 6997.510803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.269 3.731 3 H 0.059 0.941 4 C -0.524 4.524 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.989 5.989 13 C 0.104 3.896 14 S 2.781 3.219 15 O -0.999 6.999 16 O -0.982 6.982 17 N -1.123 6.123 18 C 0.158 3.842 19 H 0.090 0.910 20 C -0.123 4.123 21 C -0.077 4.077 22 C -0.083 4.083 23 C -0.122 4.122 24 C -0.128 4.128 25 C -0.123 4.123 26 C -0.115 4.115 27 C -0.062 4.062 28 C -0.109 4.109 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.011 0.989 32 H 0.263 0.737 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.413 0.587 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.125 0.875 45 H 0.089 0.911 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.729 -9.503 -6.448 16.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.563 4.563 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.832 5.832 13 C -0.042 4.042 14 S 2.790 3.210 15 O -0.982 6.982 16 O -0.966 6.966 17 N -0.880 5.880 18 C 0.050 3.950 19 H 0.108 0.892 20 C -0.162 4.162 21 C -0.115 4.115 22 C -0.083 4.083 23 C -0.140 4.140 24 C -0.146 4.146 25 C -0.141 4.141 26 C -0.134 4.134 27 C -0.063 4.063 28 C -0.147 4.147 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.246 0.754 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.143 0.857 45 H 0.107 0.893 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.212 -9.023 -7.153 16.072 hybrid contribution 0.652 -0.476 1.618 1.808 sum 11.864 -9.500 -5.535 16.175 Atomic orbital electron populations 1.22051 0.98034 0.99625 1.00709 1.18718 0.91824 0.92748 0.80122 0.92374 1.21380 1.31795 1.13085 0.90037 0.91702 1.24906 0.94965 0.94967 0.98898 1.69877 1.36159 1.22593 1.23751 0.86601 0.78626 0.79977 0.82794 1.20705 1.21258 1.19879 1.57700 1.64485 1.21246 1.39765 1.21227 0.99031 0.82137 1.01835 1.01835 0.72676 0.73116 0.73396 1.93541 1.86052 1.76385 1.42264 1.93594 1.83648 1.32506 1.86876 1.56109 1.32350 1.14501 1.85002 1.20633 0.94698 0.82896 0.96769 0.89248 1.21834 0.95076 0.96801 1.02475 1.20443 1.01201 0.93606 0.96249 1.19625 0.96282 0.95649 0.96763 1.21079 1.00091 0.94265 0.98583 1.21003 0.98552 0.99490 0.95569 1.21060 0.96608 0.97139 0.99263 1.21287 0.99962 0.94058 0.98046 1.19656 0.95862 0.96187 0.94617 1.21227 1.01659 0.93824 0.98011 0.88966 0.94897 0.96945 0.92672 0.93810 0.93302 0.90138 0.75427 0.90621 0.90909 0.90349 0.90528 0.86491 0.86490 0.86322 0.85737 0.89256 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.97 37.16 0.33 -3.04 16 2 C 0.27 6.31 2.62 -69.08 -0.18 6.13 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.52 -12.66 7.99 -34.44 -0.28 -12.94 16 5 H 0.06 1.49 5.96 -52.49 -0.31 1.17 16 6 C 0.07 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.77 11.32 55.43 0.63 -23.14 16 8 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 12 N -0.99 -19.65 3.02 -115.86 -0.35 -20.00 16 13 C 0.10 1.80 8.10 59.85 0.48 2.28 16 14 S 2.78 53.19 6.08 -107.50 -0.65 52.53 16 15 O -1.00 -20.17 16.56 -57.17 -0.95 -21.11 16 16 O -0.98 -22.07 16.70 -57.17 -0.95 -23.03 16 17 N -1.12 -17.06 5.55 -4.87 -0.03 -17.08 16 18 C 0.16 2.14 2.83 -67.90 -0.19 1.95 16 19 H 0.09 1.26 7.04 -51.93 -0.37 0.89 16 20 C -0.12 -1.33 5.52 -26.70 -0.15 -1.48 16 21 C -0.08 -0.77 5.67 -28.05 -0.16 -0.93 16 22 C -0.08 -0.98 5.74 -104.62 -0.60 -1.58 16 23 C -0.12 -1.31 9.61 -39.44 -0.38 -1.68 16 24 C -0.13 -1.36 10.05 -39.68 -0.40 -1.76 16 25 C -0.12 -1.43 10.05 -39.69 -0.40 -1.83 16 26 C -0.12 -1.54 9.61 -39.45 -0.38 -1.92 16 27 C -0.06 -0.84 5.74 -104.61 -0.60 -1.44 16 28 C -0.11 -1.56 5.29 -28.05 -0.15 -1.71 16 29 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 30 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.74 7.28 -51.93 -0.38 0.36 16 35 H 0.08 1.40 7.02 -51.93 -0.36 1.03 16 36 H 0.41 5.56 8.84 -34.47 -0.30 5.25 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 41 H 0.12 0.99 8.05 -52.49 -0.42 0.56 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.12 1.69 8.05 -52.49 -0.42 1.27 16 45 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.10 1.56 5.34 -51.93 -0.28 1.28 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -30.22 372.76 -11.70 -41.92 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.86 Total: 7.91 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -3.14 Total: -18.38 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.25 Total: -60.22 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -1.90 Total: -44.14 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 53.19 SS G_CDS: -0.65 Total: 52.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.22 -11.70 -41.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282422908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.070 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds