Wall clock time and date at job start Tue Mar 31 2020 20:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46871 * 2 1 4 4 C 1.50705 * 109.46721 * 239.99837 * 2 1 3 5 5 H 1.07997 * 120.00016 * 239.99568 * 4 2 1 6 6 C 1.37873 * 120.00113 * 60.00447 * 4 2 1 7 7 N 1.31522 * 119.99911 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00026 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47174 * 90.00044 * 8 6 4 10 10 H 1.48503 * 109.47008 * 209.99530 * 8 6 4 11 11 H 1.48501 * 109.47260 * 329.99684 * 8 6 4 12 12 N 1.46500 * 109.46826 * 120.00146 * 2 1 3 13 13 C 1.46497 * 120.00445 * 60.00080 * 12 2 1 14 14 S 1.65605 * 119.99700 * 239.99491 * 12 2 1 15 15 O 1.42100 * 106.40270 * 336.46608 * 14 12 2 16 16 O 1.42101 * 106.40042 * 203.54242 * 14 12 2 17 17 N 1.65602 * 107.21440 * 90.00296 * 14 12 2 18 18 C 1.46496 * 119.99789 * 65.00269 * 17 14 12 19 19 C 1.53000 * 109.47028 * 163.17933 * 18 17 14 20 20 C 1.50697 * 115.55485 * 297.44110 * 19 18 17 21 21 C 1.38231 * 119.99978 * 114.44786 * 20 19 18 22 22 C 1.38234 * 119.99994 * 180.02562 * 21 20 19 23 23 C 1.38238 * 120.00179 * 0.02562 * 22 21 20 24 24 C 1.38234 * 119.99472 * 359.97014 * 23 22 21 25 25 C 1.38231 * 120.00450 * 0.05558 * 24 23 22 26 26 C 1.53002 * 117.49779 * 83.11155 * 19 18 17 27 27 C 1.53000 * 117.49827 * 151.77118 * 19 18 17 28 28 H 1.09003 * 109.47062 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47242 * 300.00052 * 1 2 3 30 30 H 1.09005 * 109.47169 * 60.00053 * 1 2 3 31 31 H 0.96993 * 119.99826 * 180.02562 * 7 6 4 32 32 H 1.08990 * 109.47301 * 269.99890 * 13 12 2 33 33 H 1.09006 * 109.46715 * 29.99825 * 13 12 2 34 34 H 1.09003 * 109.47385 * 149.99338 * 13 12 2 35 35 H 0.97000 * 120.00171 * 244.99617 * 17 14 12 36 36 H 1.08997 * 109.47756 * 43.18136 * 18 17 14 37 37 H 1.09004 * 109.47152 * 283.17830 * 18 17 14 38 38 H 1.08001 * 120.00299 * 0.02562 * 21 20 19 39 39 H 1.08004 * 120.00191 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00224 * 179.70027 * 23 22 21 41 41 H 1.08009 * 119.99766 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.00252 * 179.97438 * 25 24 23 43 43 H 1.08999 * 117.50061 * 215.00039 * 26 19 18 44 44 H 1.09000 * 117.50173 * 0.02729 * 26 19 18 45 45 H 1.08998 * 117.50465 * 359.97438 * 27 19 18 46 46 H 1.09008 * 117.50015 * 144.97549 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3446 -2.1616 -4.4123 10 1 2.4871 -0.1403 -5.1121 11 1 3.6307 -1.7568 -3.7120 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.5794 1.1829 1.5748 16 8 3.7118 -0.8790 2.9814 17 7 1.9607 0.8090 3.3998 18 6 1.1510 -0.0352 4.2816 19 6 0.6461 0.7970 5.4620 20 6 1.7139 1.3627 6.3625 21 6 1.8974 2.7304 6.4425 22 6 2.8772 3.2492 7.2681 23 6 3.6739 2.4003 8.0134 24 6 3.4902 1.0325 7.9335 25 6 2.5108 0.5136 7.1075 26 6 -0.6139 1.6376 5.2461 27 6 -0.6741 0.3755 6.1102 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.7082 1.1608 -3.4844 32 1 0.7376 -2.1444 1.9993 33 1 1.5295 -2.5969 0.4708 34 1 2.4629 -2.5819 1.9863 35 1 1.9054 1.7750 3.4682 36 1 1.7584 -0.8608 4.6527 37 1 0.3008 -0.4308 3.7259 38 1 1.2753 3.3937 5.8599 39 1 3.0209 4.3179 7.3303 40 1 4.4426 2.8054 8.6548 41 1 4.1130 0.3691 8.5156 42 1 2.3676 -0.5550 7.0448 43 1 -0.6706 2.5997 5.7553 44 1 -1.0835 1.5973 4.2632 45 1 -1.1833 -0.4944 5.6955 46 1 -0.7703 0.5069 7.1880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282922012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:51 Heat of formation + Delta-G solvation = -46.546582 kcal Electronic energy + Delta-G solvation = -28135.163388 eV Core-core repulsion = 24344.413973 eV Total energy + Delta-G solvation = -3790.749415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.75974 -38.41941 -38.21203 -37.85695 -36.88329 -35.06968 -34.50734 -31.78097 -31.43978 -30.90343 -27.47047 -27.22602 -26.93108 -24.01682 -23.88962 -22.65577 -22.58709 -20.59659 -20.17481 -18.82707 -18.57886 -18.30321 -17.80869 -17.25214 -16.82703 -16.21110 -16.00350 -15.58317 -15.45053 -15.20091 -15.05816 -14.85002 -14.48410 -14.27309 -14.02425 -13.78760 -13.63770 -13.46239 -13.42706 -13.16560 -13.12017 -13.00200 -12.84658 -12.68748 -12.60884 -12.32092 -12.23490 -12.11902 -12.01813 -11.90922 -11.84866 -11.34183 -11.15839 -10.98936 -10.50445 -10.42681 -9.79043 -9.65729 -9.53074 -8.11219 -6.24526 -0.31013 0.46414 0.52960 1.42194 1.44584 1.53879 2.04701 2.43517 2.60884 2.82014 2.96197 3.17137 3.43375 3.63199 3.75319 3.91522 4.06583 4.16018 4.17693 4.20722 4.31499 4.45579 4.60756 4.66878 4.77196 4.78441 4.81060 4.84010 4.89880 4.95908 5.04737 5.07171 5.08328 5.18214 5.19008 5.22296 5.28496 5.31707 5.62264 5.62309 5.65082 5.70543 5.73164 5.88877 6.06455 6.14894 6.21296 6.31533 6.83093 7.44217 8.92896 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019968 B = 0.003240 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.879361 B = 8641.045458 C = 9006.290218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.274 3.726 3 H 0.023 0.977 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.995 5.995 13 C 0.090 3.910 14 S 2.796 3.204 15 O -1.021 7.021 16 O -1.010 7.010 17 N -1.114 6.114 18 C 0.159 3.841 19 C -0.112 4.112 20 C -0.052 4.052 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.134 4.134 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.163 4.163 27 C -0.139 4.139 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.264 0.736 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.418 0.582 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.127 0.873 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.388 0.343 21.547 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.170 3.830 3 H 0.040 0.960 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.837 5.837 13 C -0.056 4.056 14 S 2.805 3.195 15 O -1.005 7.005 16 O -0.993 6.993 17 N -0.876 5.876 18 C 0.034 3.966 19 C -0.113 4.113 20 C -0.052 4.052 21 C -0.146 4.146 22 C -0.147 4.147 23 C -0.152 4.152 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.200 4.200 27 C -0.177 4.177 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.253 0.747 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.145 0.855 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.132 0.868 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.485 0.279 21.395 21.678 hybrid contribution 0.156 0.201 -1.144 1.172 sum -3.329 0.480 20.250 20.528 Atomic orbital electron populations 1.21884 0.96599 1.00219 1.00442 1.18384 0.92365 0.91225 0.81063 0.95970 1.21671 1.31641 1.13056 0.91549 0.92514 1.25629 0.95247 0.95711 1.01629 1.69977 1.37291 1.23631 1.24316 0.85607 0.78779 0.78445 0.79096 1.19382 1.20993 1.20039 1.57516 1.69915 1.21080 1.35170 1.21515 1.00624 0.80673 1.02739 1.01160 0.73645 0.72297 0.72366 1.93544 1.76007 1.57521 1.73436 1.93495 1.69982 1.61306 1.74544 1.55673 1.62255 1.17901 1.51749 1.20873 0.94917 0.91925 0.88927 1.20182 0.88748 1.04840 0.97555 1.19102 0.96357 0.93423 0.96272 1.21288 0.99107 0.94807 0.99420 1.21444 0.95736 1.00879 0.96655 1.21466 0.99986 0.93672 1.00076 1.21434 0.98142 0.96063 0.99173 1.21208 0.96061 1.00283 0.96799 1.23180 0.98192 0.96364 1.02262 1.23143 0.95458 0.99242 0.99829 0.93890 0.94489 0.91676 0.92660 0.91078 0.90985 0.91110 0.74723 0.90503 0.89948 0.85064 0.84361 0.84286 0.84524 0.85540 0.87699 0.87965 0.86825 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 8.97 71.98 0.65 -5.15 16 2 C 0.27 13.42 2.62 44.25 0.12 13.53 16 3 H 0.02 1.25 6.91 -2.39 -0.02 1.24 16 4 C -0.54 -29.24 7.99 25.60 0.20 -29.04 16 5 H 0.06 3.06 7.33 -2.91 -0.02 3.04 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.91 -51.23 11.32 21.45 0.24 -50.99 16 8 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 N -0.99 -40.45 3.12 -520.45 -1.62 -42.07 16 13 C 0.09 3.01 9.65 127.77 1.23 4.24 16 14 S 2.80 110.62 6.14 -56.49 -0.35 110.27 16 15 O -1.02 -49.80 16.70 -128.00 -2.14 -51.93 16 16 O -1.01 -41.82 16.19 -128.00 -2.07 -43.89 16 17 N -1.11 -32.64 5.90 -187.50 -1.11 -33.75 16 18 C 0.16 3.68 6.03 86.38 0.52 4.20 16 19 C -0.11 -2.12 1.76 -52.93 -0.09 -2.22 16 20 C -0.05 -1.09 4.98 -19.87 -0.10 -1.19 16 21 C -0.13 -2.59 9.23 22.27 0.21 -2.39 16 22 C -0.13 -2.43 10.05 22.27 0.22 -2.20 16 23 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 24 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 25 C -0.13 -2.68 9.66 22.27 0.22 -2.47 16 26 C -0.16 -2.61 9.44 30.62 0.29 -2.32 16 27 C -0.14 -1.99 9.94 30.62 0.30 -1.68 16 28 H 0.04 1.75 7.67 -2.39 -0.02 1.73 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 3.24 6.07 -2.38 -0.01 3.23 16 31 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 2.58 7.02 -2.38 -0.02 2.56 16 34 H 0.07 2.24 7.02 -2.39 -0.02 2.22 16 35 H 0.42 11.45 8.67 -96.74 -0.84 10.62 16 36 H 0.08 1.82 7.71 -2.39 -0.02 1.80 16 37 H 0.08 1.68 8.11 -2.38 -0.02 1.66 16 38 H 0.13 2.30 7.02 -2.91 -0.02 2.28 16 39 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16 43 H 0.10 1.52 7.14 -2.39 -0.02 1.50 16 44 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -70.23 387.87 -0.21 -70.44 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.14 Total: 26.38 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 4.66 Total: -29.83 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -2.49 Total: -126.81 kcal Atomic # 8 Polarization: -91.61 SS G_CDS: -4.21 Total: -95.82 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 110.62 SS G_CDS: -0.35 Total: 110.27 kcal Total: -70.23 -0.21 -70.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282922012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.895 kcal (2) G-P(sol) polarization free energy of solvation -70.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds