Wall clock time and date at job start Tue Mar 31 2020 20:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47428 * 2 1 4 4 C 1.50709 * 109.47104 * 119.99498 * 2 1 3 5 5 H 1.08001 * 119.99723 * 119.99636 * 4 2 1 6 6 C 1.37873 * 120.00214 * 300.00129 * 4 2 1 7 7 N 1.31520 * 119.99692 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00315 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47291 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47333 * 119.99824 * 8 6 4 11 11 H 1.48503 * 109.47225 * 240.00012 * 8 6 4 12 12 N 1.46497 * 109.47258 * 239.99059 * 2 1 3 13 13 C 1.46500 * 120.00541 * 300.00627 * 12 2 1 14 14 S 1.65606 * 119.99806 * 119.99771 * 12 2 1 15 15 O 1.42095 * 106.40572 * 203.54517 * 14 12 2 16 16 O 1.42101 * 106.40266 * 336.46690 * 14 12 2 17 17 N 1.65600 * 107.21590 * 90.00196 * 14 12 2 18 18 C 1.46509 * 119.99957 * 65.00247 * 17 14 12 19 19 C 1.52998 * 109.46908 * 165.14832 * 18 17 14 20 20 C 1.50697 * 115.55281 * 278.90338 * 19 18 17 21 21 C 1.38235 * 120.00105 * 148.51935 * 20 19 18 22 22 C 1.38228 * 120.00135 * 179.74687 * 21 20 19 23 23 C 1.38239 * 119.99935 * 0.52348 * 22 21 20 24 24 C 1.38235 * 119.99760 * 359.74592 * 23 22 21 25 25 C 1.38230 * 120.00041 * 328.78767 * 20 19 18 26 26 C 1.53001 * 117.49315 * 133.19585 * 19 18 17 27 27 C 1.52997 * 60.00177 * 252.50850 * 26 19 18 28 28 H 1.08995 * 109.47143 * 60.00262 * 1 2 3 29 29 H 1.09007 * 109.47183 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47438 * 300.00063 * 1 2 3 31 31 H 0.97000 * 119.99794 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47081 * 89.99780 * 13 12 2 33 33 H 1.09006 * 109.46747 * 209.99715 * 13 12 2 34 34 H 1.09000 * 109.46628 * 329.98955 * 13 12 2 35 35 H 0.97003 * 120.00292 * 245.00134 * 17 14 12 36 36 H 1.09001 * 109.46838 * 285.15156 * 18 17 14 37 37 H 1.08998 * 109.46626 * 45.15029 * 18 17 14 38 38 H 1.08005 * 119.99965 * 359.97438 * 21 20 19 39 39 H 1.07999 * 120.00585 * 180.29806 * 22 21 20 40 40 H 1.08000 * 120.00143 * 179.77677 * 23 22 21 41 41 H 1.08001 * 119.99990 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.99973 * 0.02562 * 25 20 19 43 43 H 1.08998 * 117.50459 * 0.02562 * 26 19 18 44 44 H 1.09003 * 117.49910 * 145.02372 * 26 19 18 45 45 H 1.08993 * 117.50240 * 252.51247 * 27 26 19 46 46 H 1.09007 * 117.51537 * 107.48265 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3225 -1.1192 4.0080 9 1 3.1474 -2.2861 3.6041 10 1 3.1472 -0.1854 4.8161 11 1 1.1678 -1.5863 4.8167 12 7 2.0183 -0.6908 -1.1960 13 6 1.6644 -2.0934 -1.4278 14 16 2.9704 0.1139 -2.2862 15 8 2.8228 -0.5649 -3.5258 16 8 2.6904 1.4971 -2.1194 17 7 4.5437 -0.1044 -1.8179 18 6 5.1358 -1.4443 -1.8413 19 6 6.6575 -1.3314 -1.7295 20 6 7.3813 -1.0092 -3.0114 21 6 8.5500 -0.2718 -2.9787 22 6 9.2168 0.0193 -4.1540 23 6 8.7090 -0.4178 -5.3632 24 6 7.5373 -1.1505 -5.3964 25 6 6.8736 -1.4464 -4.2205 26 6 7.3627 -2.2524 -0.7318 27 6 7.2299 -0.7580 -0.4317 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7089 1.1616 3.4843 32 1 0.7376 -2.1445 -1.9992 33 1 2.4629 -2.5821 -1.9861 34 1 1.5296 -2.5969 -0.4706 35 1 5.0734 0.6549 -1.5282 36 1 4.7519 -2.0258 -1.0030 37 1 4.8759 -1.9400 -2.7766 38 1 8.9442 0.0739 -2.0344 39 1 10.1324 0.5914 -4.1281 40 1 9.2280 -0.1873 -6.2819 41 1 7.1403 -1.4917 -6.3411 42 1 5.9579 -2.0185 -4.2465 43 1 6.7426 -2.9389 -0.1553 44 1 8.3504 -2.6255 -1.0025 45 1 8.1302 -0.1480 -0.5050 46 1 6.5224 -0.4607 0.3424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282922015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:55 Heat of formation + Delta-G solvation = -24.523261 kcal Electronic energy + Delta-G solvation = -28284.492637 eV Core-core repulsion = 24494.698225 eV Total energy + Delta-G solvation = -3789.794412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.01462 -37.47537 -36.63315 -36.13786 -35.22078 -33.85779 -32.61333 -31.05504 -30.59683 -29.09021 -26.47794 -25.48202 -25.19594 -23.19472 -22.84007 -22.03004 -20.78968 -19.61206 -18.78134 -17.55797 -16.99915 -16.73000 -16.36867 -16.01059 -15.24010 -15.18310 -14.77653 -14.72079 -14.28409 -13.93259 -13.67155 -13.42895 -13.23938 -12.94687 -12.80491 -12.68061 -12.43290 -11.99025 -11.80358 -11.69666 -11.60783 -11.50375 -11.36798 -11.22471 -11.17873 -10.99913 -10.89756 -10.85572 -10.56055 -10.42281 -10.27157 -10.22069 -10.08337 -9.35701 -9.09531 -8.99032 -8.61376 -8.50529 -7.96724 -6.11394 -4.19901 1.24976 1.27859 1.33419 3.21211 3.29698 3.31176 3.38428 3.63105 3.97382 4.17813 4.33043 4.43502 4.57042 4.63946 4.88164 4.92399 4.98980 5.06385 5.10550 5.19351 5.32531 5.41545 5.51902 5.59076 5.63402 5.74378 5.79035 5.87141 5.96705 6.02510 6.10988 6.15507 6.16049 6.34452 6.41630 6.45597 6.56296 6.65318 6.87330 6.87716 6.92432 7.11345 7.27909 7.53825 7.61856 7.77370 8.03937 8.24473 8.83142 9.46364 10.93690 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.003965 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.136276 B = 7060.465455 C = 8261.492900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.991 5.991 13 C 0.106 3.894 14 S 2.783 3.217 15 O -0.999 6.999 16 O -0.982 6.982 17 N -1.123 6.123 18 C 0.161 3.839 19 C -0.102 4.102 20 C -0.036 4.036 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.117 4.117 25 C -0.111 4.111 26 C -0.153 4.153 27 C -0.166 4.166 28 H 0.012 0.988 29 H 0.032 0.968 30 H 0.092 0.908 31 H 0.263 0.737 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.413 0.587 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.017 -5.786 -9.528 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.563 4.563 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.833 5.833 13 C -0.041 4.041 14 S 2.792 3.208 15 O -0.983 6.983 16 O -0.966 6.966 17 N -0.882 5.882 18 C 0.035 3.965 19 C -0.104 4.104 20 C -0.036 4.036 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.135 4.135 25 C -0.129 4.129 26 C -0.191 4.191 27 C -0.203 4.203 28 H 0.031 0.969 29 H 0.051 0.949 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.247 0.753 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.122 0.878 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.509 -5.337 -10.230 17.766 hybrid contribution 0.642 -0.309 1.387 1.559 sum 14.152 -5.646 -8.843 17.616 Atomic orbital electron populations 1.22054 0.98017 0.99642 1.00745 1.18720 0.91844 0.92754 0.80187 0.92380 1.21399 1.31771 1.13039 0.90136 0.91890 1.24928 0.94989 0.94975 0.98988 1.69896 1.36264 1.22597 1.23685 0.86488 0.78626 0.79552 0.82953 1.19830 1.21019 1.21020 1.57716 1.64497 1.21310 1.39802 1.21204 0.98980 0.82127 1.01791 1.01770 0.72590 0.73129 0.73348 1.93530 1.86087 1.76389 1.42257 1.93592 1.83652 1.32509 1.86865 1.55970 1.32011 1.14757 1.85457 1.20692 0.89687 0.84035 1.02110 1.20312 0.93742 1.07171 0.89141 1.18996 0.94512 0.97185 0.92927 1.21059 0.95503 0.98958 0.98479 1.21087 0.99890 1.00227 0.92571 1.21131 0.96680 0.99052 0.97821 1.21153 0.95487 0.98660 0.98169 1.21107 0.99945 0.99992 0.91825 1.23112 1.01640 0.93625 1.00733 1.23173 1.03140 0.96306 0.97681 0.96900 0.94885 0.88938 0.92702 0.93873 0.93338 0.90194 0.75344 0.90947 0.90361 0.85925 0.86260 0.86338 0.86026 0.85558 0.87850 0.88530 0.88319 0.87266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.97 37.16 0.33 -3.11 16 2 C 0.27 6.46 2.62 -69.08 -0.18 6.28 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.52 -13.10 7.99 -34.44 -0.28 -13.38 16 5 H 0.06 1.52 7.33 -52.49 -0.38 1.13 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -24.10 11.32 55.43 0.63 -23.47 16 8 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 N -0.99 -20.21 3.12 -115.85 -0.36 -20.57 16 13 C 0.11 1.84 9.28 59.85 0.56 2.39 16 14 S 2.78 54.55 6.09 -107.50 -0.66 53.89 16 15 O -1.00 -20.34 16.68 -57.17 -0.95 -21.29 16 16 O -0.98 -22.68 16.70 -57.17 -0.95 -23.64 16 17 N -1.12 -17.85 6.03 -10.61 -0.06 -17.91 16 18 C 0.16 2.19 5.96 -4.04 -0.02 2.17 16 19 C -0.10 -1.20 2.05 -155.66 -0.32 -1.52 16 20 C -0.04 -0.43 5.48 -104.63 -0.57 -1.00 16 21 C -0.12 -1.32 9.37 -39.59 -0.37 -1.69 16 22 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 23 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 24 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 25 C -0.11 -1.35 9.31 -39.59 -0.37 -1.72 16 26 C -0.15 -1.55 9.86 -26.73 -0.26 -1.81 16 27 C -0.17 -1.80 9.33 -26.73 -0.25 -2.05 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.03 0.73 7.67 -51.92 -0.40 0.33 16 30 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.72 7.79 -51.93 -0.40 0.31 16 34 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 35 H 0.41 6.16 8.45 -34.47 -0.29 5.87 16 36 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 37 H 0.08 1.04 5.79 -51.93 -0.30 0.74 16 38 H 0.12 1.14 5.94 -52.48 -0.31 0.83 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.13 1.51 6.33 -52.49 -0.33 1.18 16 43 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.10 0.93 6.09 -51.93 -0.32 0.61 16 46 H 0.11 1.31 8.14 -51.92 -0.42 0.89 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -31.15 382.92 -11.34 -42.49 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.70 Total: 8.61 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -3.02 Total: -18.85 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 0.20 Total: -61.95 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -1.91 Total: -44.93 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 54.55 SS G_CDS: -0.66 Total: 53.89 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.15 -11.34 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282922015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.963 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds