Wall clock time and date at job start Tue Mar 31 2020 20:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47428 * 2 1 4 4 C 1.50709 * 109.47104 * 119.99498 * 2 1 3 5 5 H 1.08001 * 119.99723 * 119.99636 * 4 2 1 6 6 C 1.37873 * 120.00214 * 300.00129 * 4 2 1 7 7 N 1.31520 * 119.99692 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00315 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47291 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47333 * 119.99824 * 8 6 4 11 11 H 1.48503 * 109.47225 * 240.00012 * 8 6 4 12 12 N 1.46497 * 109.47258 * 239.99059 * 2 1 3 13 13 C 1.46500 * 120.00541 * 300.00627 * 12 2 1 14 14 S 1.65606 * 119.99806 * 119.99771 * 12 2 1 15 15 O 1.42095 * 106.40572 * 203.54517 * 14 12 2 16 16 O 1.42101 * 106.40266 * 336.46690 * 14 12 2 17 17 N 1.65600 * 107.21590 * 90.00196 * 14 12 2 18 18 C 1.46509 * 119.99957 * 65.00247 * 17 14 12 19 19 C 1.52998 * 109.46908 * 165.14832 * 18 17 14 20 20 C 1.50697 * 115.55281 * 278.90338 * 19 18 17 21 21 C 1.38235 * 120.00105 * 148.51935 * 20 19 18 22 22 C 1.38228 * 120.00135 * 179.74687 * 21 20 19 23 23 C 1.38239 * 119.99935 * 0.52348 * 22 21 20 24 24 C 1.38235 * 119.99760 * 359.74592 * 23 22 21 25 25 C 1.38230 * 120.00041 * 328.78767 * 20 19 18 26 26 C 1.53001 * 117.49315 * 133.19585 * 19 18 17 27 27 C 1.52997 * 60.00177 * 252.50850 * 26 19 18 28 28 H 1.08995 * 109.47143 * 60.00262 * 1 2 3 29 29 H 1.09007 * 109.47183 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47438 * 300.00063 * 1 2 3 31 31 H 0.97000 * 119.99794 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47081 * 89.99780 * 13 12 2 33 33 H 1.09006 * 109.46747 * 209.99715 * 13 12 2 34 34 H 1.09000 * 109.46628 * 329.98955 * 13 12 2 35 35 H 0.97003 * 120.00292 * 245.00134 * 17 14 12 36 36 H 1.09001 * 109.46838 * 285.15156 * 18 17 14 37 37 H 1.08998 * 109.46626 * 45.15029 * 18 17 14 38 38 H 1.08005 * 119.99965 * 359.97438 * 21 20 19 39 39 H 1.07999 * 120.00585 * 180.29806 * 22 21 20 40 40 H 1.08000 * 120.00143 * 179.77677 * 23 22 21 41 41 H 1.08001 * 119.99990 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.99973 * 0.02562 * 25 20 19 43 43 H 1.08998 * 117.50459 * 0.02562 * 26 19 18 44 44 H 1.09003 * 117.49910 * 145.02372 * 26 19 18 45 45 H 1.08993 * 117.50240 * 252.51247 * 27 26 19 46 46 H 1.09007 * 117.51537 * 107.48265 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3225 -1.1192 4.0080 9 1 3.1474 -2.2861 3.6041 10 1 3.1472 -0.1854 4.8161 11 1 1.1678 -1.5863 4.8167 12 7 2.0183 -0.6908 -1.1960 13 6 1.6644 -2.0934 -1.4278 14 16 2.9704 0.1139 -2.2862 15 8 2.8228 -0.5649 -3.5258 16 8 2.6904 1.4971 -2.1194 17 7 4.5437 -0.1044 -1.8179 18 6 5.1358 -1.4443 -1.8413 19 6 6.6575 -1.3314 -1.7295 20 6 7.3813 -1.0092 -3.0114 21 6 8.5500 -0.2718 -2.9787 22 6 9.2168 0.0193 -4.1540 23 6 8.7090 -0.4178 -5.3632 24 6 7.5373 -1.1505 -5.3964 25 6 6.8736 -1.4464 -4.2205 26 6 7.3627 -2.2524 -0.7318 27 6 7.2299 -0.7580 -0.4317 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7089 1.1616 3.4843 32 1 0.7376 -2.1445 -1.9992 33 1 2.4629 -2.5821 -1.9861 34 1 1.5296 -2.5969 -0.4706 35 1 5.0734 0.6549 -1.5282 36 1 4.7519 -2.0258 -1.0030 37 1 4.8759 -1.9400 -2.7766 38 1 8.9442 0.0739 -2.0344 39 1 10.1324 0.5914 -4.1281 40 1 9.2280 -0.1873 -6.2819 41 1 7.1403 -1.4917 -6.3411 42 1 5.9579 -2.0185 -4.2465 43 1 6.7426 -2.9389 -0.1553 44 1 8.3504 -2.6255 -1.0025 45 1 8.1302 -0.1480 -0.5050 46 1 6.5224 -0.4607 0.3424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282922015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:54 Heat of formation + Delta-G solvation = -43.551580 kcal Electronic energy + Delta-G solvation = -28285.317767 eV Core-core repulsion = 24494.698225 eV Total energy + Delta-G solvation = -3790.619542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.85617 -38.42855 -38.23307 -37.86763 -36.90309 -35.06036 -34.49162 -31.86136 -31.38634 -30.92233 -27.59070 -27.22409 -26.95773 -24.03316 -23.67186 -22.85178 -22.60484 -20.57836 -20.24766 -18.84908 -18.44971 -18.24939 -17.99318 -17.33214 -16.81466 -16.15778 -16.02386 -15.58709 -15.51764 -15.12649 -14.89541 -14.87777 -14.49360 -14.48126 -13.83821 -13.72722 -13.71297 -13.49469 -13.44550 -13.21621 -13.14590 -12.97803 -12.86748 -12.73791 -12.66470 -12.41354 -12.16286 -12.13146 -11.95797 -11.89820 -11.78551 -11.42753 -11.19565 -11.10289 -10.49384 -10.41873 -9.79629 -9.66692 -9.42360 -8.07328 -6.22112 -0.29028 0.44902 0.52703 1.45876 1.48869 1.58548 2.00113 2.46970 2.58633 2.74926 3.10851 3.21578 3.43657 3.59221 3.71495 3.74401 4.05306 4.10608 4.16006 4.21040 4.29399 4.45163 4.58759 4.60876 4.70697 4.79237 4.79987 4.84594 4.89769 4.94838 4.98049 5.05978 5.07461 5.15939 5.18599 5.21432 5.27258 5.29427 5.62181 5.63006 5.65910 5.68118 5.73477 5.85575 6.06129 6.14594 6.17579 6.30393 6.87536 7.47656 8.97655 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.003965 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.136276 B = 7060.465455 C = 8261.492900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.273 3.727 3 H 0.023 0.977 4 C -0.525 4.525 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.260 1.260 10 H -0.287 1.287 11 H -0.286 1.286 12 N -0.996 5.996 13 C 0.098 3.902 14 S 2.798 3.202 15 O -1.006 7.006 16 O -1.021 7.021 17 N -1.114 6.114 18 C 0.155 3.845 19 C -0.110 4.110 20 C -0.048 4.048 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.134 4.134 24 C -0.128 4.128 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.168 4.168 28 H 0.016 0.984 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.262 0.738 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.418 0.582 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.134 0.866 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.093 -7.265 -9.644 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.041 0.959 4 C -0.564 4.564 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.184 1.184 10 H -0.213 1.213 11 H -0.212 1.212 12 N -0.838 5.838 13 C -0.047 4.047 14 S 2.807 3.193 15 O -0.990 6.990 16 O -1.006 7.006 17 N -0.875 5.875 18 C 0.030 3.970 19 C -0.112 4.112 20 C -0.048 4.048 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.151 4.151 24 C -0.146 4.146 25 C -0.152 4.152 26 C -0.176 4.176 27 C -0.204 4.204 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.253 0.747 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.154 0.846 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.152 0.848 42 H 0.138 0.862 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.585 -6.841 -10.366 19.929 hybrid contribution 0.041 0.146 1.336 1.344 sum 15.627 -6.695 -9.030 19.250 Atomic orbital electron populations 1.21952 0.98049 1.00088 0.99842 1.18392 0.91832 0.91389 0.81496 0.95918 1.21649 1.31344 1.13020 0.90406 0.90923 1.25700 0.95241 0.95599 1.01896 1.70037 1.37605 1.24102 1.24186 0.85490 0.77980 0.78705 0.79299 1.18358 1.21285 1.21176 1.57591 1.65175 1.22450 1.38537 1.21424 1.00474 0.80517 1.02335 1.01144 0.73120 0.71973 0.73080 1.93515 1.86592 1.76275 1.42592 1.93534 1.84682 1.35035 1.87317 1.55668 1.30534 1.16177 1.85150 1.20886 0.91241 0.82510 1.02399 1.20217 0.92388 1.08878 0.89713 1.19079 0.95143 0.97805 0.92736 1.21288 0.95295 0.98777 0.99555 1.21436 1.00539 0.99842 0.92243 1.21460 0.96361 0.98364 0.98961 1.21409 0.95958 0.98863 0.98380 1.21221 1.00324 1.00993 0.92673 1.23187 1.02041 0.93148 0.99217 1.23204 1.03327 0.97337 0.96574 0.96450 0.93641 0.91201 0.92847 0.93132 0.90653 0.90222 0.74737 0.90611 0.90104 0.84580 0.83912 0.84068 0.84786 0.86220 0.87473 0.87098 0.86794 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.72 8.97 71.98 0.65 -6.07 16 2 C 0.27 13.32 2.62 44.25 0.12 13.44 16 3 H 0.02 1.28 6.91 -2.39 -0.02 1.26 16 4 C -0.52 -26.04 7.99 25.60 0.20 -25.83 16 5 H 0.07 3.39 7.33 -2.91 -0.02 3.37 16 6 C 0.02 0.78 5.30 84.65 0.45 1.22 16 7 N -0.92 -50.78 11.32 21.45 0.24 -50.54 16 8 Si 0.96 40.52 29.54 68.60 2.03 42.55 16 9 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 10 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 12 N -1.00 -40.31 3.12 -520.45 -1.62 -41.93 16 13 C 0.10 3.27 9.28 127.77 1.19 4.45 16 14 S 2.80 109.85 6.09 -56.49 -0.34 109.51 16 15 O -1.01 -40.41 16.68 -128.00 -2.14 -42.55 16 16 O -1.02 -48.34 16.70 -128.00 -2.14 -50.48 16 17 N -1.11 -35.01 6.03 -187.48 -1.13 -36.14 16 18 C 0.16 4.05 5.96 86.38 0.51 4.57 16 19 C -0.11 -2.42 2.05 -52.93 -0.11 -2.53 16 20 C -0.05 -1.07 5.48 -19.87 -0.11 -1.18 16 21 C -0.13 -2.58 9.37 22.27 0.21 -2.37 16 22 C -0.12 -2.16 10.05 22.27 0.22 -1.93 16 23 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 24 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 25 C -0.13 -3.16 9.31 22.27 0.21 -2.96 16 26 C -0.14 -2.48 9.86 30.59 0.30 -2.17 16 27 C -0.17 -3.34 9.33 30.59 0.29 -3.06 16 28 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.04 2.01 7.67 -2.38 -0.02 1.99 16 30 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 31 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 2.08 7.79 -2.38 -0.02 2.06 16 34 H 0.08 2.66 7.02 -2.39 -0.02 2.64 16 35 H 0.42 12.45 8.45 -96.74 -0.82 11.63 16 36 H 0.08 1.92 7.94 -2.39 -0.02 1.90 16 37 H 0.08 2.07 5.79 -2.39 -0.01 2.06 16 38 H 0.14 2.19 5.94 -2.91 -0.02 2.17 16 39 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 42 H 0.12 2.85 6.33 -2.91 -0.02 2.83 16 43 H 0.11 1.84 8.08 -2.39 -0.02 1.82 16 44 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.11 1.89 6.09 -2.39 -0.01 1.87 16 46 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -66.36 382.92 -0.35 -66.72 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.18 Total: 31.87 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 4.57 Total: -29.01 kcal Atomic # 7 Polarization: -126.10 SS G_CDS: -2.51 Total: -128.61 kcal Atomic # 8 Polarization: -88.75 SS G_CDS: -4.27 Total: -93.03 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 16 Polarization: 109.85 SS G_CDS: -0.34 Total: 109.51 kcal Total: -66.36 -0.35 -66.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282922015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.164 kcal (2) G-P(sol) polarization free energy of solvation -66.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds