Wall clock time and date at job start Tue Mar 31 2020 20:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47668 * 2 1 4 4 C 1.50696 * 109.46847 * 239.99218 * 2 1 3 5 5 H 1.07998 * 120.00294 * 275.00528 * 4 2 1 6 6 C 1.37874 * 119.99959 * 95.00675 * 4 2 1 7 7 N 1.31512 * 120.00427 * 184.90694 * 6 4 2 8 8 Si 1.86799 * 119.99957 * 4.90418 * 6 4 2 9 9 H 1.48505 * 109.47179 * 84.82211 * 8 6 4 10 10 H 1.48498 * 109.47479 * 204.81618 * 8 6 4 11 11 H 1.48496 * 109.47401 * 324.81859 * 8 6 4 12 12 N 1.46506 * 109.46735 * 119.99566 * 2 1 3 13 13 C 1.46502 * 119.99940 * 60.00017 * 12 2 1 14 14 S 1.65594 * 120.00077 * 239.99347 * 12 2 1 15 15 O 1.42106 * 106.40190 * 336.46623 * 14 12 2 16 16 O 1.42097 * 106.40795 * 203.54399 * 14 12 2 17 17 N 1.65604 * 107.21860 * 90.00089 * 14 12 2 18 18 C 1.46496 * 120.00452 * 270.00524 * 17 14 12 19 19 C 1.46501 * 119.99727 * 90.00114 * 17 14 12 20 20 H 1.09006 * 110.34639 * 357.87398 * 19 17 14 21 21 C 1.54340 * 110.30424 * 120.00430 * 19 17 14 22 22 C 1.54347 * 102.39434 * 145.26840 * 21 19 17 23 23 C 1.51369 * 105.25529 * 333.60374 * 22 21 19 24 24 C 1.38298 * 130.55408 * 197.14832 * 23 22 21 25 25 C 1.38105 * 120.28386 * 180.02562 * 24 23 22 26 26 C 1.38253 * 119.93317 * 0.02620 * 25 24 23 27 27 C 1.38101 * 119.93778 * 0.02562 * 26 25 24 28 28 C 1.38455 * 109.62546 * 17.23172 * 23 22 21 29 29 H 1.09000 * 109.46955 * 55.10144 * 1 2 3 30 30 H 1.08995 * 109.47353 * 175.10640 * 1 2 3 31 31 H 1.09002 * 109.47050 * 295.10951 * 1 2 3 32 32 H 0.97003 * 120.00370 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.46803 * 269.99588 * 13 12 2 34 34 H 1.08995 * 109.46947 * 29.99680 * 13 12 2 35 35 H 1.08998 * 109.46944 * 149.99824 * 13 12 2 36 36 H 1.08997 * 109.46910 * 270.00103 * 18 17 14 37 37 H 1.09004 * 109.47210 * 29.99298 * 18 17 14 38 38 H 1.08992 * 109.47950 * 149.99566 * 18 17 14 39 39 H 1.09001 * 110.82496 * 27.04364 * 21 19 17 40 40 H 1.09004 * 110.81975 * 263.49876 * 21 19 17 41 41 H 1.09008 * 110.29788 * 92.57444 * 22 21 19 42 42 H 1.08995 * 110.30309 * 214.62689 * 22 21 19 43 43 H 1.08004 * 119.82482 * 0.06466 * 24 23 22 44 44 H 1.08003 * 120.03222 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.02881 * 179.97438 * 26 25 24 46 46 H 1.07994 * 119.89427 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.1353 -1.7856 -1.2289 6 6 2.3603 0.0118 -2.3580 7 7 2.7061 -0.6135 -3.4620 8 14 2.3135 1.8787 -2.3176 9 1 3.5989 2.3947 -1.7820 10 1 2.1062 2.3986 -3.6931 11 1 1.1982 2.3272 -1.4457 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 16 2.9704 0.1142 2.2862 15 8 3.5795 1.1829 1.5747 16 8 3.7118 -0.8788 2.9816 17 7 1.9608 0.8093 3.3998 18 6 1.4470 2.1632 3.1783 19 6 1.5813 0.0702 4.6064 20 1 2.0195 -0.9279 4.5930 21 6 2.0327 0.8363 5.8679 22 6 0.9013 0.5212 6.8694 23 6 -0.3181 0.2407 6.0175 24 6 -1.6602 0.2127 6.3500 25 6 -2.6100 -0.0720 5.3888 26 6 -2.2193 -0.3310 4.0882 27 6 -0.8799 -0.3049 3.7528 28 6 0.0742 -0.0193 4.7154 29 1 -0.3633 0.5880 -0.8429 30 1 -0.3634 -1.0239 -0.0877 31 1 -0.3633 0.4361 0.9306 32 1 2.9372 -0.1053 -4.2553 33 1 0.7374 -2.1442 1.9995 34 1 1.5294 -2.5968 0.4711 35 1 2.4627 -2.5818 1.9866 36 1 2.1323 2.8882 3.6173 37 1 1.3596 2.3480 2.1076 38 1 0.4669 2.2609 3.6449 39 1 2.0892 1.9070 5.6715 40 1 2.9881 0.4569 6.2305 41 1 1.1566 -0.3555 7.4647 42 1 0.7206 1.3784 7.5179 43 1 -1.9662 0.4152 7.3658 44 1 -3.6571 -0.0924 5.6529 45 1 -2.9607 -0.5543 3.3354 46 1 -0.5754 -0.5069 2.7366 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282928027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:33 Heat of formation + Delta-G solvation = -40.675219 kcal Electronic energy + Delta-G solvation = -29402.854154 eV Core-core repulsion = 25612.359340 eV Total energy + Delta-G solvation = -3790.494814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.38107 -36.86911 -36.69174 -36.31951 -35.28437 -34.12088 -32.46710 -31.03116 -29.96200 -29.03046 -27.56644 -25.70904 -25.30639 -25.05456 -22.75320 -21.05023 -20.77599 -20.51217 -18.52547 -17.53047 -17.42785 -16.75450 -16.41782 -15.80628 -15.36044 -15.15611 -14.99583 -14.39734 -14.02331 -13.90613 -13.54174 -13.33695 -13.25106 -12.90136 -12.79049 -12.62873 -12.50867 -12.42121 -12.14151 -11.97419 -11.89832 -11.83484 -11.52887 -11.39458 -11.37399 -11.17345 -11.12295 -11.03560 -10.87196 -10.75160 -10.61914 -10.32704 -9.81179 -9.38842 -9.03530 -8.87111 -8.64358 -8.60128 -8.06671 -6.18143 -4.18701 1.01096 1.27836 1.33961 3.26215 3.32798 3.36150 3.44403 3.68873 3.95458 4.26275 4.36485 4.43462 4.72904 4.85230 4.91564 4.99638 5.03043 5.06604 5.13989 5.17200 5.41537 5.48151 5.53509 5.58783 5.62939 5.70672 5.80508 5.84772 5.90896 5.92418 6.00851 6.05722 6.10288 6.18726 6.31774 6.36888 6.38272 6.47782 6.49652 6.55784 6.61771 6.73031 6.92228 6.94375 7.16024 7.48574 7.64711 8.41896 8.86218 9.43325 10.93708 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.004605 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.399467 B = 6078.500906 C = 6703.526359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.235 3.765 3 H 0.055 0.945 4 C -0.516 4.516 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.888 5.888 8 Si 0.866 3.134 9 H -0.264 1.264 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.983 5.983 13 C 0.094 3.906 14 S 2.766 3.234 15 O -0.972 6.972 16 O -0.991 6.991 17 N -1.005 6.005 18 C 0.097 3.903 19 C 0.189 3.811 20 H 0.112 0.888 21 C -0.129 4.129 22 C -0.080 4.080 23 C -0.093 4.093 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.092 4.092 28 C -0.104 4.104 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.026 0.974 32 H 0.267 0.733 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.206 2.719 20.019 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.132 3.868 3 H 0.073 0.927 4 C -0.556 4.556 5 H 0.100 0.900 6 C -0.125 4.125 7 N -0.525 5.525 8 Si 0.692 3.308 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.825 5.825 13 C -0.052 4.052 14 S 2.777 3.223 15 O -0.956 6.956 16 O -0.974 6.974 17 N -0.842 5.842 18 C -0.049 4.049 19 C 0.082 3.918 20 H 0.130 0.870 21 C -0.168 4.168 22 C -0.117 4.117 23 C -0.094 4.094 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.139 4.139 27 C -0.110 4.110 28 C -0.105 4.105 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.135 0.865 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.155 2.827 19.814 21.612 hybrid contribution -0.559 0.931 -0.221 1.108 sum -8.714 3.758 19.593 21.770 Atomic orbital electron populations 1.22283 0.98298 1.01262 0.98855 1.19099 0.91167 0.93128 0.83450 0.92748 1.21124 1.44198 0.95954 0.94372 0.89969 1.24983 0.93849 0.98417 0.95295 1.69883 1.44825 1.36079 1.01724 0.87028 0.80167 0.86368 0.77203 1.18930 1.21244 1.18884 1.57973 1.69918 1.19894 1.34688 1.21349 0.98814 0.82221 1.02804 1.02549 0.74079 0.73204 0.72444 1.93591 1.73897 1.55996 1.72120 1.93514 1.69224 1.60201 1.74503 1.58252 1.67334 1.24611 1.33990 1.21347 0.99423 0.82047 1.02034 1.20367 0.90222 0.96306 0.84861 0.87009 1.22689 0.98557 1.01642 0.93911 1.21025 0.91539 1.01987 0.97160 1.20537 0.94125 0.99544 0.95145 1.20498 0.91607 1.01597 0.99373 1.21036 0.99111 1.00100 0.93335 1.21080 0.95755 1.00586 0.96498 1.20885 0.92199 0.98244 0.99674 1.20852 0.95430 1.00174 0.94089 0.92749 0.92779 0.95473 0.92318 0.94477 0.89635 0.91695 0.92795 0.91014 0.91283 0.89972 0.89832 0.89957 0.90618 0.86520 0.86125 0.85872 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.10 37.16 0.34 -2.48 16 2 C 0.23 5.29 2.28 -69.08 -0.16 5.13 16 3 H 0.05 1.30 4.06 -51.93 -0.21 1.09 16 4 C -0.52 -13.87 8.72 -34.44 -0.30 -14.17 16 5 H 0.08 2.35 6.82 -52.49 -0.36 1.99 16 6 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 7 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 8 Si 0.87 21.54 26.99 -169.99 -4.59 16.95 16 9 H -0.26 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.26 -6.08 6.82 56.52 0.39 -5.69 16 12 N -0.98 -19.63 3.12 -115.85 -0.36 -19.99 16 13 C 0.09 1.63 9.81 59.85 0.59 2.21 16 14 S 2.77 54.19 6.05 -107.50 -0.65 53.54 16 15 O -0.97 -22.51 15.78 -57.17 -0.90 -23.41 16 16 O -0.99 -20.38 15.36 -57.17 -0.88 -21.26 16 17 N -1.01 -15.08 3.17 -114.74 -0.36 -15.45 16 18 C 0.10 1.31 9.21 59.84 0.55 1.86 16 19 C 0.19 2.44 3.24 -68.05 -0.22 2.21 16 20 H 0.11 1.51 7.02 -51.93 -0.36 1.14 16 21 C -0.13 -1.33 6.67 -25.32 -0.17 -1.50 16 22 C -0.08 -0.70 6.76 -26.85 -0.18 -0.88 16 23 C -0.09 -0.98 6.15 -104.19 -0.64 -1.63 16 24 C -0.11 -1.09 10.03 -39.61 -0.40 -1.48 16 25 C -0.12 -1.13 10.05 -39.62 -0.40 -1.53 16 26 C -0.12 -1.31 10.05 -39.63 -0.40 -1.70 16 27 C -0.09 -1.14 10.00 -39.53 -0.40 -1.53 16 28 C -0.10 -1.26 4.58 -104.11 -0.48 -1.74 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.99 7.83 -51.93 -0.41 0.58 16 31 H 0.03 0.44 6.82 -51.93 -0.35 0.08 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.04 0.53 7.48 -51.93 -0.39 0.14 16 34 H 0.09 1.57 6.56 -51.93 -0.34 1.23 16 35 H 0.06 1.09 7.02 -51.93 -0.36 0.72 16 36 H 0.05 0.65 7.94 -51.93 -0.41 0.24 16 37 H 0.07 1.06 7.79 -51.93 -0.40 0.65 16 38 H 0.07 0.82 7.13 -51.93 -0.37 0.45 16 39 H 0.08 0.82 7.06 -51.93 -0.37 0.46 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 44 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 45 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 46 H 0.13 1.71 6.07 -52.49 -0.32 1.39 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -32.61 372.25 -10.49 -43.10 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.77 Total: 1.65 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.36 Total: -15.09 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.05 Total: -61.10 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -1.78 Total: -44.67 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.59 Total: 16.95 kcal Atomic # 16 Polarization: 54.19 SS G_CDS: -0.65 Total: 53.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.61 -10.49 -43.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282928027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.425 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds