Wall clock time and date at job start Tue Mar 31 2020 20:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47213 * 2 1 4 4 C 1.50703 * 109.47316 * 119.99762 * 2 1 3 5 5 H 1.08001 * 119.99534 * 84.40699 * 4 2 1 6 6 C 1.37867 * 120.00354 * 264.40975 * 4 2 1 7 7 N 1.31510 * 120.00577 * 171.91448 * 6 4 2 8 8 Si 1.86806 * 119.99903 * 351.91464 * 6 4 2 9 9 H 1.48511 * 109.46766 * 270.00098 * 8 6 4 10 10 H 1.48495 * 109.47274 * 29.99883 * 8 6 4 11 11 H 1.48494 * 109.47360 * 150.00170 * 8 6 4 12 12 N 1.46503 * 109.47136 * 239.99613 * 2 1 3 13 13 C 1.46493 * 120.00378 * 300.00445 * 12 2 1 14 14 S 1.65607 * 119.99432 * 119.99661 * 12 2 1 15 15 O 1.42106 * 106.40069 * 203.54083 * 14 12 2 16 16 O 1.42100 * 106.40461 * 336.46374 * 14 12 2 17 17 N 1.65609 * 107.21516 * 90.00608 * 14 12 2 18 18 C 1.46495 * 119.99774 * 269.99849 * 17 14 12 19 19 C 1.46492 * 119.99942 * 89.99394 * 17 14 12 20 20 H 1.08998 * 110.27410 * 351.62177 * 19 17 14 21 21 C 1.54352 * 110.30062 * 113.69546 * 19 17 14 22 22 C 1.54348 * 102.39103 * 92.57384 * 21 19 17 23 23 C 1.51369 * 105.17168 * 26.34522 * 22 21 19 24 24 C 1.38492 * 130.39551 * 162.78895 * 23 22 21 25 25 C 1.38108 * 120.21878 * 180.02562 * 24 23 22 26 26 C 1.38249 * 119.93073 * 0.02562 * 25 24 23 27 27 C 1.38104 * 119.93889 * 359.97438 * 26 25 24 28 28 C 1.38223 * 109.75724 * 342.82057 * 23 22 21 29 29 H 1.09008 * 109.47269 * 295.50779 * 1 2 3 30 30 H 1.08995 * 109.47202 * 55.50879 * 1 2 3 31 31 H 1.09004 * 109.47350 * 175.51368 * 1 2 3 32 32 H 0.97003 * 119.99767 * 354.86579 * 7 6 4 33 33 H 1.09000 * 109.47442 * 89.99459 * 13 12 2 34 34 H 1.09005 * 109.47032 * 209.99763 * 13 12 2 35 35 H 1.09005 * 109.46809 * 329.99500 * 13 12 2 36 36 H 1.08998 * 109.47402 * 93.62396 * 18 17 14 37 37 H 1.09002 * 109.47238 * 213.63062 * 18 17 14 38 38 H 1.09007 * 109.47055 * 333.62319 * 18 17 14 39 39 H 1.09006 * 110.82259 * 210.79728 * 21 19 17 40 40 H 1.08999 * 110.82131 * 334.34418 * 21 19 17 41 41 H 1.08995 * 110.30537 * 145.27034 * 22 21 19 42 42 H 1.09001 * 110.30340 * 267.32637 * 22 21 19 43 43 H 1.08004 * 119.89263 * 0.04082 * 24 23 22 44 44 H 1.07995 * 120.03366 * 179.97438 * 25 24 23 45 45 H 1.08007 * 120.03056 * 179.97438 * 26 25 24 46 46 H 1.08003 * 119.89318 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.1264 -1.7863 1.2323 6 6 2.3718 0.0131 2.3539 7 7 2.6572 -0.6102 3.4762 8 14 2.4265 1.8790 2.2820 9 1 3.7895 2.3195 1.8901 10 1 1.4425 2.3648 1.2815 11 1 2.0911 2.4359 3.6170 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 16 2.9703 0.1142 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6903 1.4973 -2.1193 17 7 4.5438 -0.1042 -1.8180 18 6 5.1724 0.8457 -0.8969 19 6 5.3068 -1.2474 -2.3249 20 1 4.6522 -1.9257 -2.8721 21 6 6.4566 -0.7632 -3.2337 22 6 7.6344 -0.6449 -2.2431 23 6 7.3212 -1.6285 -1.1360 24 6 8.1416 -2.1775 -0.1647 25 6 7.6277 -3.0692 0.7564 26 6 6.2902 -3.4158 0.7090 27 6 5.4705 -2.8694 -0.2589 28 6 5.9839 -1.9748 -1.1831 29 1 -0.3634 0.4426 0.9275 30 1 -0.3633 0.5819 -0.8470 31 1 -0.3634 -1.0245 -0.0804 32 1 2.5570 -1.5732 3.5351 33 1 0.7375 -2.1444 -1.9993 34 1 2.4629 -2.5819 -1.9864 35 1 1.5295 -2.5969 -0.4708 36 1 5.0682 0.4834 0.1258 37 1 6.2301 0.9436 -1.1418 38 1 4.6868 1.8172 -0.9895 39 1 6.6742 -1.4987 -4.0083 40 1 6.2211 0.2060 -3.6733 41 1 8.5698 -0.9132 -2.7340 42 1 7.6937 0.3682 -1.8453 43 1 9.1866 -1.9074 -0.1271 44 1 8.2703 -3.4958 1.5123 45 1 5.8868 -4.1132 1.4283 46 1 4.4257 -3.1403 -0.2949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282928046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:42 Heat of formation + Delta-G solvation = -41.428046 kcal Electronic energy + Delta-G solvation = -29835.201388 eV Core-core repulsion = 26044.673929 eV Total energy + Delta-G solvation = -3790.527459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.24359 -36.85861 -36.59549 -36.29725 -35.33410 -33.48835 -32.57710 -30.95322 -29.84129 -28.81888 -27.62911 -25.71545 -24.78935 -24.71050 -22.57942 -20.80240 -20.67414 -20.33431 -18.41735 -17.81106 -17.38493 -16.91710 -16.63407 -15.52085 -15.22903 -14.94521 -14.82810 -14.31996 -13.85437 -13.63575 -13.40386 -13.26051 -13.10132 -13.02565 -12.83042 -12.35168 -12.26192 -12.06712 -12.00796 -11.92390 -11.73210 -11.70298 -11.53025 -11.42538 -11.29557 -11.21338 -10.91125 -10.79426 -10.70734 -10.62310 -10.51162 -10.45606 -9.67899 -9.08176 -8.78302 -8.61219 -8.50965 -8.42951 -8.06538 -6.52387 -4.21740 1.07817 1.54416 1.60524 3.30685 3.37837 3.41479 3.53199 3.94736 4.03407 4.38550 4.39036 4.61433 4.80337 5.03863 5.08274 5.17172 5.17323 5.22477 5.28732 5.37451 5.51918 5.57165 5.65751 5.77337 5.83778 5.89569 6.02735 6.03601 6.06762 6.09086 6.16519 6.24370 6.33162 6.36619 6.39027 6.44925 6.54675 6.61408 6.68147 6.72408 6.78089 6.86049 7.01077 7.17678 7.19024 7.57596 7.90294 8.26776 8.78995 9.47257 10.83557 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.006552 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.205293 B = 4272.618931 C = 5376.432325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.232 3.768 3 H 0.058 0.942 4 C -0.588 4.588 5 H 0.065 0.935 6 C 0.038 3.962 7 N -0.901 5.901 8 Si 1.026 2.974 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.282 1.282 12 N -0.986 5.986 13 C 0.108 3.892 14 S 2.770 3.230 15 O -0.995 6.995 16 O -0.983 6.983 17 N -0.993 5.993 18 C 0.082 3.918 19 C 0.193 3.807 20 H 0.100 0.900 21 C -0.129 4.129 22 C -0.083 4.083 23 C -0.089 4.089 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.075 4.075 28 C -0.103 4.103 29 H 0.056 0.944 30 H 0.025 0.975 31 H 0.047 0.953 32 H 0.269 0.731 33 H 0.042 0.958 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.073 -3.267 -9.171 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.129 3.871 3 H 0.076 0.924 4 C -0.628 4.628 5 H 0.083 0.917 6 C -0.169 4.169 7 N -0.534 5.534 8 Si 0.854 3.146 9 H -0.203 1.203 10 H -0.197 1.197 11 H -0.208 1.208 12 N -0.827 5.827 13 C -0.038 4.038 14 S 2.782 3.218 15 O -0.979 6.979 16 O -0.967 6.967 17 N -0.830 5.830 18 C -0.063 4.063 19 C 0.086 3.914 20 H 0.118 0.882 21 C -0.168 4.168 22 C -0.119 4.119 23 C -0.090 4.090 24 C -0.134 4.134 25 C -0.132 4.132 26 C -0.136 4.136 27 C -0.094 4.094 28 C -0.104 4.104 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.131 -1.378 -9.061 12.938 hybrid contribution -0.252 -1.709 -0.210 1.740 sum 8.879 -3.087 -9.271 13.203 Atomic orbital electron populations 1.22175 0.98365 1.00260 0.99515 1.19231 0.91527 0.93232 0.83101 0.92422 1.22202 1.48189 0.95435 0.96991 0.91709 1.25673 0.92839 1.06164 0.92217 1.70797 1.44443 1.11561 1.26642 0.84203 0.78114 0.75953 0.76376 1.20343 1.19722 1.20802 1.58015 1.64466 1.21114 1.39139 1.21159 0.98880 0.82215 1.01585 1.02260 0.72602 0.73542 0.73407 1.93531 1.85943 1.76175 1.42268 1.93547 1.83776 1.32396 1.86971 1.57928 1.30191 1.34376 1.60484 1.21633 0.98884 0.92056 0.93729 1.20108 0.93596 0.86267 0.91385 0.88163 1.22664 0.94356 1.02571 0.97203 1.21144 0.98736 0.98195 0.93853 1.20508 0.94273 0.97512 0.96677 1.20509 0.99189 0.98273 0.95403 1.21007 0.95604 0.98099 0.98509 1.21032 0.93746 1.00584 0.98270 1.20683 0.99744 0.95437 0.93527 1.20618 0.94563 0.97417 0.97830 0.92535 0.95557 0.93428 0.92087 0.93943 0.93231 0.90468 0.91792 0.91212 0.90388 0.89952 0.89936 0.90819 0.89921 0.86650 0.86221 0.86031 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.25 37.16 0.34 -2.68 16 2 C 0.23 5.33 2.35 -69.08 -0.16 5.17 16 3 H 0.06 1.40 3.77 -51.93 -0.20 1.21 16 4 C -0.59 -14.88 8.57 -34.44 -0.30 -15.18 16 5 H 0.06 1.73 6.82 -52.49 -0.36 1.37 16 6 C 0.04 1.01 5.47 -17.83 -0.10 0.91 16 7 N -0.90 -25.79 13.69 55.43 0.76 -25.03 16 8 Si 1.03 24.35 27.63 -169.99 -4.70 19.65 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.27 -6.18 6.45 56.52 0.36 -5.82 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.99 -20.10 3.12 -115.85 -0.36 -20.46 16 13 C 0.11 1.90 9.25 59.84 0.55 2.45 16 14 S 2.77 55.04 6.04 -107.50 -0.65 54.39 16 15 O -1.00 -20.12 15.90 -57.17 -0.91 -21.03 16 16 O -0.98 -21.91 15.27 -57.17 -0.87 -22.78 16 17 N -0.99 -17.13 3.17 -114.74 -0.36 -17.49 16 18 C 0.08 1.40 9.70 59.84 0.58 1.98 16 19 C 0.19 2.89 3.28 -68.05 -0.22 2.66 16 20 H 0.10 1.49 7.15 -51.93 -0.37 1.12 16 21 C -0.13 -1.54 6.51 -25.32 -0.16 -1.71 16 22 C -0.08 -0.92 5.99 -26.85 -0.16 -1.08 16 23 C -0.09 -1.20 5.89 -104.21 -0.61 -1.82 16 24 C -0.12 -1.48 10.04 -39.54 -0.40 -1.87 16 25 C -0.11 -1.50 10.05 -39.62 -0.40 -1.89 16 26 C -0.12 -1.73 10.05 -39.63 -0.40 -2.13 16 27 C -0.08 -1.20 10.04 -39.54 -0.40 -1.59 16 28 C -0.10 -1.56 5.04 -104.21 -0.53 -2.08 16 29 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.94 7.52 -51.93 -0.39 0.55 16 32 H 0.27 7.66 8.73 -40.82 -0.36 7.30 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 35 H 0.08 1.39 6.56 -51.93 -0.34 1.05 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.07 0.98 4.89 -51.93 -0.25 0.72 16 38 H 0.08 1.35 6.94 -51.93 -0.36 0.99 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.90 6.24 -51.93 -0.32 0.58 16 43 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 44 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 45 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 46 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -30.53 372.54 -10.67 -41.20 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.84 Total: 4.81 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.36 Total: -18.86 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 0.03 Total: -62.98 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -1.78 Total: -43.82 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -4.70 Total: 19.65 kcal Atomic # 16 Polarization: 55.04 SS G_CDS: -0.65 Total: 54.39 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.53 -10.67 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282928046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.231 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds