Wall clock time and date at job start Tue Mar 31 2020 20:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47213 * 2 1 4 4 C 1.50703 * 109.47316 * 119.99762 * 2 1 3 5 5 H 1.08001 * 119.99534 * 84.40699 * 4 2 1 6 6 C 1.37867 * 120.00354 * 264.40975 * 4 2 1 7 7 N 1.31510 * 120.00577 * 171.91448 * 6 4 2 8 8 Si 1.86806 * 119.99903 * 351.91464 * 6 4 2 9 9 H 1.48511 * 109.46766 * 270.00098 * 8 6 4 10 10 H 1.48495 * 109.47274 * 29.99883 * 8 6 4 11 11 H 1.48494 * 109.47360 * 150.00170 * 8 6 4 12 12 N 1.46503 * 109.47136 * 239.99613 * 2 1 3 13 13 C 1.46493 * 120.00378 * 300.00445 * 12 2 1 14 14 S 1.65607 * 119.99432 * 119.99661 * 12 2 1 15 15 O 1.42106 * 106.40069 * 203.54083 * 14 12 2 16 16 O 1.42100 * 106.40461 * 336.46374 * 14 12 2 17 17 N 1.65609 * 107.21516 * 90.00608 * 14 12 2 18 18 C 1.46495 * 119.99774 * 269.99849 * 17 14 12 19 19 C 1.46492 * 119.99942 * 89.99394 * 17 14 12 20 20 H 1.08998 * 110.27410 * 351.62177 * 19 17 14 21 21 C 1.54352 * 110.30062 * 113.69546 * 19 17 14 22 22 C 1.54348 * 102.39103 * 92.57384 * 21 19 17 23 23 C 1.51369 * 105.17168 * 26.34522 * 22 21 19 24 24 C 1.38492 * 130.39551 * 162.78895 * 23 22 21 25 25 C 1.38108 * 120.21878 * 180.02562 * 24 23 22 26 26 C 1.38249 * 119.93073 * 0.02562 * 25 24 23 27 27 C 1.38104 * 119.93889 * 359.97438 * 26 25 24 28 28 C 1.38223 * 109.75724 * 342.82057 * 23 22 21 29 29 H 1.09008 * 109.47269 * 295.50779 * 1 2 3 30 30 H 1.08995 * 109.47202 * 55.50879 * 1 2 3 31 31 H 1.09004 * 109.47350 * 175.51368 * 1 2 3 32 32 H 0.97003 * 119.99767 * 354.86579 * 7 6 4 33 33 H 1.09000 * 109.47442 * 89.99459 * 13 12 2 34 34 H 1.09005 * 109.47032 * 209.99763 * 13 12 2 35 35 H 1.09005 * 109.46809 * 329.99500 * 13 12 2 36 36 H 1.08998 * 109.47402 * 93.62396 * 18 17 14 37 37 H 1.09002 * 109.47238 * 213.63062 * 18 17 14 38 38 H 1.09007 * 109.47055 * 333.62319 * 18 17 14 39 39 H 1.09006 * 110.82259 * 210.79728 * 21 19 17 40 40 H 1.08999 * 110.82131 * 334.34418 * 21 19 17 41 41 H 1.08995 * 110.30537 * 145.27034 * 22 21 19 42 42 H 1.09001 * 110.30340 * 267.32637 * 22 21 19 43 43 H 1.08004 * 119.89263 * 0.04082 * 24 23 22 44 44 H 1.07995 * 120.03366 * 179.97438 * 25 24 23 45 45 H 1.08007 * 120.03056 * 179.97438 * 26 25 24 46 46 H 1.08003 * 119.89318 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.1264 -1.7863 1.2323 6 6 2.3718 0.0131 2.3539 7 7 2.6572 -0.6102 3.4762 8 14 2.4265 1.8790 2.2820 9 1 3.7895 2.3195 1.8901 10 1 1.4425 2.3648 1.2815 11 1 2.0911 2.4359 3.6170 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 16 2.9703 0.1142 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6903 1.4973 -2.1193 17 7 4.5438 -0.1042 -1.8180 18 6 5.1724 0.8457 -0.8969 19 6 5.3068 -1.2474 -2.3249 20 1 4.6522 -1.9257 -2.8721 21 6 6.4566 -0.7632 -3.2337 22 6 7.6344 -0.6449 -2.2431 23 6 7.3212 -1.6285 -1.1360 24 6 8.1416 -2.1775 -0.1647 25 6 7.6277 -3.0692 0.7564 26 6 6.2902 -3.4158 0.7090 27 6 5.4705 -2.8694 -0.2589 28 6 5.9839 -1.9748 -1.1831 29 1 -0.3634 0.4426 0.9275 30 1 -0.3633 0.5819 -0.8470 31 1 -0.3634 -1.0245 -0.0804 32 1 2.5570 -1.5732 3.5351 33 1 0.7375 -2.1444 -1.9993 34 1 2.4629 -2.5819 -1.9864 35 1 1.5295 -2.5969 -0.4708 36 1 5.0682 0.4834 0.1258 37 1 6.2301 0.9436 -1.1418 38 1 4.6868 1.8172 -0.9895 39 1 6.6742 -1.4987 -4.0083 40 1 6.2211 0.2060 -3.6733 41 1 8.5698 -0.9132 -2.7340 42 1 7.6937 0.3682 -1.8453 43 1 9.1866 -1.9074 -0.1271 44 1 8.2703 -3.4958 1.5123 45 1 5.8868 -4.1132 1.4283 46 1 4.4257 -3.1403 -0.2949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282928046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:41 Heat of formation + Delta-G solvation = -59.865774 kcal Electronic energy + Delta-G solvation = -29836.000908 eV Core-core repulsion = 26044.673929 eV Total energy + Delta-G solvation = -3791.326978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31741 -38.49319 -38.02288 -37.76756 -36.98022 -34.66177 -34.56939 -32.06214 -31.59865 -29.84816 -28.79827 -27.30943 -26.70523 -25.97591 -23.62237 -22.28375 -21.81739 -21.71074 -19.92007 -19.76193 -18.89359 -18.58131 -17.87256 -16.88253 -16.43126 -16.13629 -15.95196 -15.85899 -15.51820 -15.24037 -15.00712 -14.72483 -14.49693 -14.12403 -13.99313 -13.91665 -13.69619 -13.59749 -13.43153 -13.41326 -13.26457 -13.09227 -13.02174 -12.99081 -12.72989 -12.55517 -12.32764 -12.29555 -12.25544 -11.98132 -11.82894 -11.64867 -11.54960 -10.99293 -10.60188 -10.11843 -9.78166 -9.71921 -9.48382 -8.63726 -6.33654 -0.44798 0.43085 0.50681 1.44387 1.46916 1.64834 1.86677 2.42813 2.44691 2.87820 3.12466 3.25394 3.35027 3.58235 3.86214 4.02647 4.05819 4.16153 4.18387 4.19534 4.36340 4.39712 4.42907 4.57392 4.61644 4.62985 4.73147 4.75517 4.79202 4.86758 4.88128 4.94731 5.00079 5.01706 5.05082 5.13798 5.21228 5.26902 5.31330 5.41360 5.52719 5.56741 5.64165 5.73436 5.86207 5.98304 6.11343 6.12248 6.66167 7.41389 8.70422 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.006552 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.205293 B = 4272.618931 C = 5376.432325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.233 3.767 3 H 0.049 0.951 4 C -0.572 4.572 5 H 0.041 0.959 6 C -0.004 4.004 7 N -0.934 5.934 8 Si 1.047 2.953 9 H -0.262 1.262 10 H -0.257 1.257 11 H -0.282 1.282 12 N -0.994 5.994 13 C 0.105 3.895 14 S 2.780 3.220 15 O -0.998 6.998 16 O -1.006 7.006 17 N -0.989 5.989 18 C 0.084 3.916 19 C 0.183 3.817 20 H 0.095 0.905 21 C -0.125 4.125 22 C -0.078 4.078 23 C -0.090 4.090 24 C -0.116 4.116 25 C -0.115 4.115 26 C -0.138 4.138 27 C -0.101 4.101 28 C -0.121 4.121 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.256 0.744 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.035 0.965 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.122 0.878 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.033 -2.449 -10.969 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.129 3.871 3 H 0.066 0.934 4 C -0.612 4.612 5 H 0.060 0.940 6 C -0.204 4.204 7 N -0.571 5.571 8 Si 0.870 3.130 9 H -0.187 1.187 10 H -0.181 1.181 11 H -0.207 1.207 12 N -0.835 5.835 13 C -0.041 4.041 14 S 2.792 3.208 15 O -0.982 6.982 16 O -0.991 6.991 17 N -0.827 5.827 18 C -0.061 4.061 19 C 0.077 3.923 20 H 0.113 0.887 21 C -0.164 4.164 22 C -0.114 4.114 23 C -0.090 4.090 24 C -0.133 4.133 25 C -0.133 4.133 26 C -0.156 4.156 27 C -0.120 4.120 28 C -0.122 4.122 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.106 0.894 41 H 0.122 0.878 42 H 0.108 0.892 43 H 0.165 0.835 44 H 0.162 0.838 45 H 0.140 0.860 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.074 -0.583 -10.878 15.534 hybrid contribution -0.827 -2.092 0.279 2.267 sum 10.248 -2.675 -10.600 14.984 Atomic orbital electron populations 1.22130 0.96872 1.01237 1.00103 1.19066 0.92704 0.92480 0.82891 0.93372 1.22232 1.46757 0.94345 0.97902 0.94049 1.26599 0.92761 1.08979 0.92083 1.70894 1.47550 1.10768 1.27860 0.83942 0.79429 0.72793 0.76812 1.18680 1.18128 1.20737 1.57864 1.65245 1.22098 1.38300 1.21291 1.00377 0.80878 1.01528 1.01802 0.72981 0.72828 0.73198 1.93523 1.86310 1.76105 1.42268 1.93512 1.84480 1.33796 1.87273 1.57769 1.29320 1.35225 1.60427 1.21651 1.00843 0.91436 0.92208 1.20419 0.94424 0.85523 0.91943 0.88689 1.22719 0.93089 1.03342 0.97257 1.21192 0.99609 0.97769 0.92843 1.20870 0.93428 0.97487 0.97246 1.20899 1.00645 0.97308 0.94493 1.21346 0.95020 0.97868 0.99079 1.21201 0.94841 1.01207 0.98359 1.20726 0.99237 0.97005 0.95045 1.20698 0.95737 0.97781 0.98014 0.92881 0.93867 0.92507 0.93446 0.92211 0.91573 0.91581 0.94586 0.87903 0.90795 0.87918 0.89374 0.87813 0.89210 0.83515 0.83772 0.85956 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.93 9.25 71.98 0.67 -5.27 16 2 C 0.23 10.66 2.35 44.24 0.10 10.77 16 3 H 0.05 2.32 3.77 -2.39 -0.01 2.31 16 4 C -0.57 -29.67 8.57 25.60 0.22 -29.45 16 5 H 0.04 2.31 6.82 -2.91 -0.02 2.29 16 6 C 0.00 -0.21 5.47 84.65 0.46 0.26 16 7 N -0.93 -55.23 13.69 21.44 0.29 -54.94 16 8 Si 1.05 48.93 27.63 68.60 1.90 50.83 16 9 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.26 -11.28 6.45 99.48 0.64 -10.64 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 N -0.99 -40.27 3.12 -520.44 -1.62 -41.89 16 13 C 0.10 3.67 9.25 127.77 1.18 4.85 16 14 S 2.78 108.00 6.04 -56.49 -0.34 107.66 16 15 O -1.00 -38.99 15.90 -128.00 -2.04 -41.03 16 16 O -1.01 -43.89 15.27 -128.00 -1.95 -45.84 16 17 N -0.99 -33.11 3.17 -516.94 -1.64 -34.75 16 18 C 0.08 2.76 9.70 127.77 1.24 3.99 16 19 C 0.18 5.21 3.28 44.92 0.15 5.36 16 20 H 0.10 2.76 7.15 -2.39 -0.02 2.74 16 21 C -0.13 -2.59 6.51 31.51 0.21 -2.39 16 22 C -0.08 -1.43 5.99 30.52 0.18 -1.24 16 23 C -0.09 -2.19 5.89 -19.59 -0.12 -2.31 16 24 C -0.12 -2.62 10.04 22.30 0.22 -2.39 16 25 C -0.12 -2.84 10.05 22.24 0.22 -2.62 16 26 C -0.14 -4.11 10.05 22.24 0.22 -3.89 16 27 C -0.10 -3.33 10.04 22.30 0.22 -3.11 16 28 C -0.12 -3.57 5.04 -19.60 -0.10 -3.67 16 29 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 2.20 7.52 -2.39 -0.02 2.18 16 32 H 0.26 15.30 8.73 -92.71 -0.81 14.49 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 2.06 7.79 -2.38 -0.02 2.04 16 35 H 0.07 2.44 6.56 -2.38 -0.02 2.43 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.10 2.63 4.89 -2.39 -0.01 2.62 16 38 H 0.07 2.48 6.94 -2.38 -0.02 2.47 16 39 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.09 1.76 8.08 -2.39 -0.02 1.74 16 41 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.09 1.56 6.24 -2.39 -0.01 1.54 16 43 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 44 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 45 H 0.12 3.45 8.06 -2.91 -0.02 3.42 16 46 H 0.10 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -66.44 372.54 0.56 -65.88 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.88 Total: 25.18 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 5.09 Total: -31.11 kcal Atomic # 7 Polarization: -128.61 SS G_CDS: -2.97 Total: -131.58 kcal Atomic # 8 Polarization: -82.88 SS G_CDS: -3.99 Total: -86.87 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 1.90 Total: 50.83 kcal Atomic # 16 Polarization: 108.00 SS G_CDS: -0.34 Total: 107.66 kcal Total: -66.44 0.56 -65.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282928046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.018 kcal (2) G-P(sol) polarization free energy of solvation -66.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds