Wall clock time and date at job start Tue Mar 31 2020 20:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47267 * 2 1 4 4 C 1.50697 * 109.46697 * 240.00238 * 2 1 3 5 5 H 1.08007 * 119.99815 * 245.41797 * 4 2 1 6 6 C 1.37877 * 120.00355 * 65.41595 * 4 2 1 7 7 N 1.31516 * 119.99586 * 5.19973 * 6 4 2 8 8 Si 1.86801 * 120.00248 * 185.19828 * 6 4 2 9 9 H 1.48503 * 109.47010 * 5.00029 * 8 6 4 10 10 H 1.48498 * 109.47172 * 125.00088 * 8 6 4 11 11 H 1.48502 * 109.47072 * 245.00194 * 8 6 4 12 12 N 1.46498 * 109.47108 * 120.00321 * 2 1 3 13 13 C 1.46499 * 119.99980 * 64.75804 * 12 2 1 14 14 S 1.65605 * 120.00081 * 244.75595 * 12 2 1 15 15 O 1.42103 * 106.39987 * 18.63526 * 14 12 2 16 16 O 1.42099 * 106.40116 * 151.55458 * 14 12 2 17 17 N 1.65598 * 107.21457 * 265.09478 * 14 12 2 18 18 C 1.47429 * 125.64868 * 94.60014 * 17 14 12 19 19 C 1.54693 * 104.94212 * 204.06884 * 18 17 14 20 20 C 1.55153 * 101.67425 * 323.27739 * 19 18 17 21 21 C 1.47020 * 125.65150 * 274.89759 * 17 14 12 22 22 H 1.09008 * 109.87747 * 59.33642 * 21 17 14 23 23 C 1.50702 * 109.88533 * 298.33025 * 21 17 14 24 24 C 1.38231 * 119.99620 * 314.60959 * 23 21 17 25 25 C 1.38235 * 119.99881 * 179.80926 * 24 23 21 26 26 C 1.38237 * 119.99915 * 0.41637 * 25 24 23 27 27 C 1.38236 * 119.99714 * 359.81390 * 26 25 24 28 28 C 1.38229 * 120.00038 * 134.87474 * 23 21 17 29 29 H 1.09008 * 109.46885 * 299.99832 * 1 2 3 30 30 H 1.08998 * 109.47236 * 59.99558 * 1 2 3 31 31 H 1.08995 * 109.47267 * 180.02562 * 1 2 3 32 32 H 0.97004 * 119.99835 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.47024 * 269.99923 * 13 12 2 34 34 H 1.09002 * 109.47327 * 29.99978 * 13 12 2 35 35 H 1.08999 * 109.47303 * 150.00264 * 13 12 2 36 36 H 1.09000 * 110.36066 * 322.99953 * 18 17 14 37 37 H 1.09001 * 110.36515 * 85.32078 * 18 17 14 38 38 H 1.08999 * 111.10114 * 205.10906 * 19 18 17 39 39 H 1.08998 * 110.81259 * 81.31575 * 19 18 17 40 40 H 1.09007 * 110.71871 * 276.97007 * 20 19 18 41 41 H 1.09002 * 110.71955 * 153.70217 * 20 19 18 42 42 H 1.08004 * 120.00476 * 359.97438 * 24 23 21 43 43 H 1.08001 * 120.00695 * 180.19994 * 25 24 23 44 44 H 1.08004 * 120.00121 * 179.78951 * 26 25 24 45 45 H 1.08006 * 119.99617 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.00258 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5791 -1.6367 -1.1339 6 6 1.7937 -0.1778 -2.4797 7 7 1.2185 0.9994 -2.5937 8 14 2.2873 -1.1283 -4.0102 9 1 2.8001 -2.4657 -3.6183 10 1 1.1056 -1.2909 -4.8946 11 1 3.3488 -0.3839 -4.7342 12 7 2.0183 -0.6907 1.1961 13 6 1.7524 -2.1200 1.3765 14 16 2.8710 0.1443 2.3443 15 8 2.5929 1.5210 2.1284 16 8 2.6289 -0.5129 3.5807 17 7 4.4792 -0.0661 2.0099 18 6 5.3193 0.8510 1.2182 19 6 6.4743 -0.0279 0.6830 20 6 6.7223 -0.9834 1.8800 21 6 5.3042 -1.2014 2.4480 22 1 4.8874 -2.1325 2.0638 23 6 5.3563 -1.2463 3.9535 24 6 5.5801 -0.0869 4.6721 25 6 5.6240 -0.1274 6.0532 26 6 5.4526 -1.3287 6.7152 27 6 5.2336 -2.4889 5.9963 28 6 5.1857 -2.4478 4.6154 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.0503 1.3740 -3.4725 33 1 0.8100 -2.2499 1.9088 34 1 1.6888 -2.6036 0.4017 35 1 2.5604 -2.5699 1.9533 36 1 4.7469 1.2710 0.3911 37 1 5.7128 1.6465 1.8510 38 1 7.3593 0.5726 0.4726 39 1 6.1610 -0.5827 -0.2013 40 1 7.3669 -0.5125 2.6223 41 1 7.1502 -1.9261 1.5387 42 1 5.7180 0.8511 4.1548 43 1 5.7956 0.7790 6.6149 44 1 5.4903 -1.3609 7.7941 45 1 5.1001 -3.4276 6.5136 46 1 5.0148 -3.3542 4.0538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282956636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:07 Heat of formation + Delta-G solvation = -44.014057 kcal Electronic energy + Delta-G solvation = -29281.969331 eV Core-core repulsion = 25491.329735 eV Total energy + Delta-G solvation = -3790.639596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.71537 -37.61337 -36.60557 -36.11096 -35.16049 -32.56919 -31.75684 -30.82032 -30.62411 -29.17953 -27.70974 -25.45830 -25.20450 -23.05608 -22.47685 -21.50134 -20.73528 -20.66040 -18.39057 -17.33879 -16.97239 -16.58824 -16.29122 -15.88297 -15.27110 -14.90194 -14.59411 -14.45584 -13.79797 -13.59800 -13.40757 -13.29054 -13.10770 -13.06451 -12.76683 -12.63482 -12.29987 -11.93612 -11.81752 -11.73659 -11.45150 -11.38784 -11.22503 -11.20391 -11.06516 -11.03450 -11.01928 -10.86476 -10.76814 -10.57525 -10.46512 -10.27387 -10.06205 -9.31067 -8.86214 -8.77175 -8.50452 -8.46261 -7.95549 -6.12488 -4.18562 1.19678 1.49607 1.54371 3.21693 3.30642 3.32467 3.50312 3.89843 4.17591 4.33963 4.53282 4.71962 4.81272 4.97735 5.07895 5.14951 5.18104 5.19881 5.21872 5.39062 5.55830 5.62912 5.65339 5.71730 5.83811 5.93126 5.96545 6.00208 6.09977 6.16896 6.17681 6.29632 6.34851 6.40953 6.56090 6.59019 6.61120 6.69646 6.79718 6.84321 6.87603 7.07266 7.12657 7.46003 7.60797 7.76006 7.95890 8.23651 8.84671 9.46840 10.94714 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016881 B = 0.004370 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.280845 B = 6405.173908 C = 6921.484493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.265 3.735 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.990 5.990 13 C 0.107 3.893 14 S 2.788 3.212 15 O -0.978 6.978 16 O -0.981 6.981 17 N -1.010 6.010 18 C 0.123 3.877 19 C -0.129 4.129 20 C -0.117 4.117 21 C 0.192 3.808 22 H 0.080 0.920 23 C -0.084 4.084 24 C -0.103 4.103 25 C -0.121 4.121 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.101 4.101 29 H 0.014 0.986 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.263 0.737 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.250 -5.446 11.142 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.162 3.838 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.799 3.201 15 O -0.962 6.962 16 O -0.965 6.965 17 N -0.847 5.847 18 C -0.002 4.002 19 C -0.168 4.168 20 C -0.156 4.156 21 C 0.085 3.915 22 H 0.098 0.902 23 C -0.085 4.085 24 C -0.122 4.122 25 C -0.139 4.139 26 C -0.142 4.142 27 C -0.137 4.137 28 C -0.120 4.120 29 H 0.033 0.967 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.712 -4.768 11.737 16.590 hybrid contribution 0.185 -0.693 -1.242 1.434 sum 10.897 -5.461 10.495 16.084 Atomic orbital electron populations 1.22003 0.98414 0.99476 1.00104 1.18732 0.91350 0.93205 0.80478 0.91906 1.21348 1.36047 1.08747 0.90221 0.91818 1.24932 0.95132 0.94737 0.98957 1.69954 1.42521 1.15894 1.23970 0.86527 0.78193 0.80098 0.83048 1.19800 1.21002 1.20973 1.57828 1.68102 1.18654 1.38615 1.21182 0.99146 0.81505 1.02086 1.01736 0.71657 0.73425 0.73286 1.93577 1.83447 1.32700 1.86508 1.93576 1.84135 1.76897 1.41906 1.59356 1.26751 1.31692 1.66911 1.21889 0.91990 0.91675 0.94674 1.22757 0.98069 0.97835 0.98134 1.22672 0.94629 1.00520 0.97744 1.20145 0.92207 0.89878 0.89284 0.90242 1.20153 0.99163 0.93831 0.95374 1.20921 0.99367 0.97877 0.94001 1.21076 1.00588 0.97800 0.94394 1.21070 1.00668 0.92954 0.99481 1.21037 1.00432 0.98164 0.94085 1.20914 0.99430 0.97197 0.94470 0.96689 0.90268 0.94683 0.92682 0.93928 0.90145 0.93606 0.89656 0.92156 0.90280 0.89993 0.90617 0.90246 0.86483 0.86408 0.86516 0.86343 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.09 37.16 0.34 -3.02 16 2 C 0.27 6.54 2.48 -69.08 -0.17 6.37 16 3 H 0.06 1.74 6.85 -51.93 -0.36 1.38 16 4 C -0.52 -13.30 8.00 -34.44 -0.28 -13.58 16 5 H 0.06 1.57 6.81 -52.48 -0.36 1.21 16 6 C 0.07 1.70 5.27 -17.82 -0.09 1.61 16 7 N -0.89 -24.31 11.95 55.43 0.66 -23.65 16 8 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.99 -21.01 3.12 -115.85 -0.36 -21.37 16 13 C 0.11 1.95 9.46 59.85 0.57 2.52 16 14 S 2.79 57.29 6.26 -107.50 -0.67 56.62 16 15 O -0.98 -23.29 16.15 -57.17 -0.92 -24.22 16 16 O -0.98 -20.75 15.63 -57.17 -0.89 -21.65 16 17 N -1.01 -16.83 2.94 -105.76 -0.31 -17.14 16 18 C 0.12 1.84 6.93 -2.64 -0.02 1.82 16 19 C -0.13 -1.52 7.07 -24.70 -0.17 -1.69 16 20 C -0.12 -1.28 6.43 -24.90 -0.16 -1.44 16 21 C 0.19 2.66 3.30 -68.11 -0.22 2.43 16 22 H 0.08 1.06 7.85 -51.92 -0.41 0.66 16 23 C -0.08 -1.19 3.35 -104.63 -0.35 -1.54 16 24 C -0.10 -1.47 8.94 -39.59 -0.35 -1.83 16 25 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 26 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 27 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 28 C -0.10 -1.33 9.67 -39.59 -0.38 -1.71 16 29 H 0.01 0.33 8.14 -51.92 -0.42 -0.10 16 30 H 0.08 2.04 6.72 -51.93 -0.35 1.69 16 31 H 0.03 0.78 7.79 -51.93 -0.40 0.37 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.47 6.56 -51.93 -0.34 1.13 16 35 H 0.05 0.72 7.80 -51.93 -0.41 0.31 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.08 0.77 7.60 -51.93 -0.39 0.37 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.12 1.61 7.90 -52.48 -0.41 1.20 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 45 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 46 H 0.12 1.33 8.00 -52.49 -0.42 0.91 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -31.59 380.43 -11.50 -43.09 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.21 Total: 3.26 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -2.50 Total: -15.74 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -0.01 Total: -62.16 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -1.82 Total: -45.86 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 57.29 SS G_CDS: -0.67 Total: 56.62 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.59 -11.50 -43.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282956636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.925 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds