Wall clock time and date at job start Tue Mar 31 2020 20:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47267 * 2 1 4 4 C 1.50697 * 109.46697 * 240.00238 * 2 1 3 5 5 H 1.08007 * 119.99815 * 245.41797 * 4 2 1 6 6 C 1.37877 * 120.00355 * 65.41595 * 4 2 1 7 7 N 1.31516 * 119.99586 * 5.19973 * 6 4 2 8 8 Si 1.86801 * 120.00248 * 185.19828 * 6 4 2 9 9 H 1.48503 * 109.47010 * 5.00029 * 8 6 4 10 10 H 1.48498 * 109.47172 * 125.00088 * 8 6 4 11 11 H 1.48502 * 109.47072 * 245.00194 * 8 6 4 12 12 N 1.46498 * 109.47108 * 120.00321 * 2 1 3 13 13 C 1.46499 * 119.99980 * 64.75804 * 12 2 1 14 14 S 1.65605 * 120.00081 * 244.75595 * 12 2 1 15 15 O 1.42103 * 106.39987 * 18.63526 * 14 12 2 16 16 O 1.42099 * 106.40116 * 151.55458 * 14 12 2 17 17 N 1.65598 * 107.21457 * 265.09478 * 14 12 2 18 18 C 1.47429 * 125.64868 * 94.60014 * 17 14 12 19 19 C 1.54693 * 104.94212 * 204.06884 * 18 17 14 20 20 C 1.55153 * 101.67425 * 323.27739 * 19 18 17 21 21 C 1.47020 * 125.65150 * 274.89759 * 17 14 12 22 22 H 1.09008 * 109.87747 * 59.33642 * 21 17 14 23 23 C 1.50702 * 109.88533 * 298.33025 * 21 17 14 24 24 C 1.38231 * 119.99620 * 314.60959 * 23 21 17 25 25 C 1.38235 * 119.99881 * 179.80926 * 24 23 21 26 26 C 1.38237 * 119.99915 * 0.41637 * 25 24 23 27 27 C 1.38236 * 119.99714 * 359.81390 * 26 25 24 28 28 C 1.38229 * 120.00038 * 134.87474 * 23 21 17 29 29 H 1.09008 * 109.46885 * 299.99832 * 1 2 3 30 30 H 1.08998 * 109.47236 * 59.99558 * 1 2 3 31 31 H 1.08995 * 109.47267 * 180.02562 * 1 2 3 32 32 H 0.97004 * 119.99835 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.47024 * 269.99923 * 13 12 2 34 34 H 1.09002 * 109.47327 * 29.99978 * 13 12 2 35 35 H 1.08999 * 109.47303 * 150.00264 * 13 12 2 36 36 H 1.09000 * 110.36066 * 322.99953 * 18 17 14 37 37 H 1.09001 * 110.36515 * 85.32078 * 18 17 14 38 38 H 1.08999 * 111.10114 * 205.10906 * 19 18 17 39 39 H 1.08998 * 110.81259 * 81.31575 * 19 18 17 40 40 H 1.09007 * 110.71871 * 276.97007 * 20 19 18 41 41 H 1.09002 * 110.71955 * 153.70217 * 20 19 18 42 42 H 1.08004 * 120.00476 * 359.97438 * 24 23 21 43 43 H 1.08001 * 120.00695 * 180.19994 * 25 24 23 44 44 H 1.08004 * 120.00121 * 179.78951 * 26 25 24 45 45 H 1.08006 * 119.99617 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.00258 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5791 -1.6367 -1.1339 6 6 1.7937 -0.1778 -2.4797 7 7 1.2185 0.9994 -2.5937 8 14 2.2873 -1.1283 -4.0102 9 1 2.8001 -2.4657 -3.6183 10 1 1.1056 -1.2909 -4.8946 11 1 3.3488 -0.3839 -4.7342 12 7 2.0183 -0.6907 1.1961 13 6 1.7524 -2.1200 1.3765 14 16 2.8710 0.1443 2.3443 15 8 2.5929 1.5210 2.1284 16 8 2.6289 -0.5129 3.5807 17 7 4.4792 -0.0661 2.0099 18 6 5.3193 0.8510 1.2182 19 6 6.4743 -0.0279 0.6830 20 6 6.7223 -0.9834 1.8800 21 6 5.3042 -1.2014 2.4480 22 1 4.8874 -2.1325 2.0638 23 6 5.3563 -1.2463 3.9535 24 6 5.5801 -0.0869 4.6721 25 6 5.6240 -0.1274 6.0532 26 6 5.4526 -1.3287 6.7152 27 6 5.2336 -2.4889 5.9963 28 6 5.1857 -2.4478 4.6154 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.0503 1.3740 -3.4725 33 1 0.8100 -2.2499 1.9088 34 1 1.6888 -2.6036 0.4017 35 1 2.5604 -2.5699 1.9533 36 1 4.7469 1.2710 0.3911 37 1 5.7128 1.6465 1.8510 38 1 7.3593 0.5726 0.4726 39 1 6.1610 -0.5827 -0.2013 40 1 7.3669 -0.5125 2.6223 41 1 7.1502 -1.9261 1.5387 42 1 5.7180 0.8511 4.1548 43 1 5.7956 0.7790 6.6149 44 1 5.4903 -1.3609 7.7941 45 1 5.1001 -3.4276 6.5136 46 1 5.0148 -3.3542 4.0538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282956636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:06 Heat of formation + Delta-G solvation = -62.786494 kcal Electronic energy + Delta-G solvation = -29282.783365 eV Core-core repulsion = 25491.329735 eV Total energy + Delta-G solvation = -3791.453630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.73313 -38.66713 -38.30935 -37.88955 -36.87911 -34.48607 -32.76182 -31.87294 -31.66222 -31.04235 -28.74310 -27.22057 -27.05406 -24.13665 -23.45421 -22.73889 -22.36453 -21.76504 -19.81785 -18.83854 -18.48907 -18.30090 -17.65484 -17.24746 -16.69076 -16.34384 -15.83999 -15.60063 -15.31173 -15.01240 -14.70807 -14.55410 -14.47279 -14.20453 -14.15866 -13.80323 -13.67360 -13.52127 -13.34096 -13.21106 -13.15011 -12.98112 -12.84674 -12.67978 -12.65813 -12.60132 -12.26947 -12.15413 -12.07687 -11.95971 -11.88777 -11.73496 -11.52011 -11.20304 -10.50598 -10.11208 -9.73740 -9.69664 -9.48397 -8.11166 -6.24009 -0.37311 0.50643 0.57893 1.44756 1.47723 1.57958 2.00370 2.45513 2.56557 2.94659 3.19631 3.24859 3.69900 3.72405 3.91265 4.01796 4.10396 4.19074 4.22714 4.29955 4.40132 4.59745 4.64524 4.66035 4.73126 4.75074 4.85544 4.87228 4.92112 4.96570 4.99362 5.03070 5.09444 5.15828 5.17110 5.21975 5.24504 5.37566 5.45221 5.57698 5.62573 5.65730 5.67097 5.79868 5.84757 6.04992 6.19730 6.26357 6.85399 7.45160 8.96407 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016881 B = 0.004370 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.280845 B = 6405.173908 C = 6921.484493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.271 3.729 3 H 0.023 0.977 4 C -0.526 4.526 5 H 0.072 0.928 6 C 0.017 3.983 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.260 1.260 10 H -0.286 1.286 11 H -0.283 1.283 12 N -0.998 5.998 13 C 0.102 3.898 14 S 2.800 3.200 15 O -1.020 7.020 16 O -0.989 6.989 17 N -1.009 6.009 18 C 0.113 3.887 19 C -0.119 4.119 20 C -0.105 4.105 21 C 0.183 3.817 22 H 0.085 0.915 23 C -0.098 4.098 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.115 4.115 29 H 0.017 0.983 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.263 0.737 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.134 0.866 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.077 -7.893 11.741 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.041 0.959 4 C -0.565 4.565 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.184 1.184 10 H -0.212 1.212 11 H -0.209 1.209 12 N -0.839 5.839 13 C -0.044 4.044 14 S 2.812 3.188 15 O -1.005 7.005 16 O -0.973 6.973 17 N -0.848 5.848 18 C -0.012 4.012 19 C -0.158 4.158 20 C -0.143 4.143 21 C 0.077 3.923 22 H 0.103 0.897 23 C -0.100 4.100 24 C -0.145 4.145 25 C -0.152 4.152 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.134 4.134 29 H 0.036 0.964 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.151 0.849 44 H 0.161 0.839 45 H 0.163 0.837 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.535 -7.242 12.357 19.033 hybrid contribution -0.353 0.081 -1.313 1.362 sum 12.182 -7.161 11.043 17.935 Atomic orbital electron populations 1.21905 0.98269 1.00074 0.99169 1.18397 0.91474 0.91641 0.81812 0.95873 1.21573 1.35646 1.08784 0.90503 0.90991 1.25717 0.95191 0.95416 1.01948 1.70094 1.43884 1.17492 1.24561 0.85496 0.77614 0.79210 0.79208 1.18411 1.21168 1.20876 1.57744 1.68905 1.19872 1.37368 1.21377 1.00632 0.79754 1.02618 1.01107 0.72400 0.72358 0.72976 1.93515 1.84636 1.35337 1.86981 1.93552 1.84869 1.76727 1.42130 1.59027 1.25613 1.33107 1.67081 1.22074 0.92520 0.92612 0.93950 1.22731 0.97478 0.97606 0.97977 1.22674 0.92951 1.01522 0.97185 1.20470 0.93368 0.88791 0.89666 0.89676 1.20243 1.00008 0.94348 0.95389 1.21058 1.00657 0.97903 0.94877 1.21387 1.00488 0.99119 0.94192 1.21451 0.99706 0.92562 1.00970 1.21433 0.99412 0.99379 0.93972 1.21232 0.99357 0.97489 0.95284 0.96388 0.92436 0.93165 0.92762 0.93187 0.90185 0.91058 0.92807 0.90912 0.87539 0.90828 0.89587 0.87737 0.87114 0.84853 0.83946 0.83730 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.59 9.09 71.98 0.65 -5.93 16 2 C 0.27 13.69 2.48 44.25 0.11 13.80 16 3 H 0.02 1.36 6.85 -2.39 -0.02 1.35 16 4 C -0.53 -26.77 8.00 25.60 0.20 -26.56 16 5 H 0.07 3.48 6.81 -2.91 -0.02 3.46 16 6 C 0.02 0.89 5.27 84.65 0.45 1.34 16 7 N -0.92 -51.82 11.95 21.45 0.26 -51.57 16 8 Si 0.96 40.95 29.54 68.60 2.03 42.98 16 9 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 10 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 12 N -1.00 -42.57 3.12 -520.45 -1.62 -44.20 16 13 C 0.10 3.56 9.46 127.77 1.21 4.77 16 14 S 2.80 116.95 6.26 -56.49 -0.35 116.59 16 15 O -1.02 -50.90 16.15 -128.00 -2.07 -52.96 16 16 O -0.99 -41.63 15.63 -128.00 -2.00 -43.63 16 17 N -1.01 -33.49 2.94 -488.51 -1.44 -34.92 16 18 C 0.11 3.42 6.93 86.78 0.60 4.02 16 19 C -0.12 -2.59 7.07 31.91 0.23 -2.36 16 20 C -0.10 -2.01 6.43 31.78 0.20 -1.80 16 21 C 0.18 4.76 3.30 44.59 0.15 4.91 16 22 H 0.09 2.09 7.85 -2.38 -0.02 2.07 16 23 C -0.10 -2.64 3.35 -19.87 -0.07 -2.70 16 24 C -0.13 -3.50 8.94 22.27 0.20 -3.30 16 25 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 26 C -0.13 -2.79 10.05 22.27 0.22 -2.57 16 27 C -0.12 -2.67 10.05 22.27 0.22 -2.44 16 28 C -0.12 -2.75 9.67 22.27 0.22 -2.53 16 29 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.06 3.05 6.72 -2.39 -0.02 3.03 16 31 H 0.05 2.24 7.79 -2.39 -0.02 2.22 16 32 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 33 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.08 2.80 6.56 -2.39 -0.02 2.79 16 35 H 0.07 2.10 7.80 -2.39 -0.02 2.08 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.09 1.51 7.60 -2.38 -0.02 1.49 16 41 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.11 3.06 7.90 -2.91 -0.02 3.04 16 43 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 44 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 45 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 46 H 0.14 2.65 8.00 -2.91 -0.02 2.62 16 Total: -1.00 -69.40 380.43 0.58 -68.82 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.96 Total: 23.30 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 4.82 Total: -24.42 kcal Atomic # 7 Polarization: -127.89 SS G_CDS: -2.80 Total: -130.69 kcal Atomic # 8 Polarization: -92.53 SS G_CDS: -4.07 Total: -96.59 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: 116.95 SS G_CDS: -0.35 Total: 116.59 kcal Total: -69.40 0.58 -68.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282956636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.038 kcal (2) G-P(sol) polarization free energy of solvation -69.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds