Wall clock time and date at job start Tue Mar 31 2020 20:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47581 * 2 1 4 4 C 1.50703 * 109.47166 * 239.99492 * 2 1 3 5 5 H 1.07995 * 120.00411 * 275.05285 * 4 2 1 6 6 C 1.37882 * 119.99649 * 95.06053 * 4 2 1 7 7 N 1.31516 * 120.00101 * 184.90646 * 6 4 2 8 8 Si 1.86800 * 119.99903 * 4.89698 * 6 4 2 9 9 H 1.48501 * 109.46817 * 84.83596 * 8 6 4 10 10 H 1.48502 * 109.47111 * 204.83306 * 8 6 4 11 11 H 1.48495 * 109.47360 * 324.83440 * 8 6 4 12 12 N 1.46504 * 109.46893 * 120.00196 * 2 1 3 13 13 C 1.46498 * 120.00324 * 59.99675 * 12 2 1 14 14 S 1.65607 * 119.99768 * 239.99786 * 12 2 1 15 15 O 1.42095 * 106.39955 * 23.54229 * 14 12 2 16 16 O 1.42098 * 106.40046 * 156.45455 * 14 12 2 17 17 N 1.65594 * 107.21867 * 270.00120 * 14 12 2 18 18 C 1.47420 * 125.65254 * 90.02362 * 17 14 12 19 19 C 1.54913 * 104.83396 * 155.83247 * 18 17 14 20 20 C 1.55160 * 101.58068 * 37.01360 * 19 18 17 21 21 C 1.47029 * 125.64415 * 269.71696 * 17 14 12 22 22 H 1.08998 * 109.88094 * 300.51342 * 21 17 14 23 23 C 1.50694 * 109.88479 * 61.68073 * 21 17 14 24 24 C 1.38237 * 120.00287 * 39.72497 * 23 21 17 25 25 C 1.38229 * 120.00395 * 179.81328 * 24 23 21 26 26 C 1.38243 * 119.99748 * 0.41561 * 25 24 23 27 27 C 1.38232 * 120.00014 * 359.81595 * 26 25 24 28 28 C 1.38237 * 119.99980 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47037 * 294.97868 * 1 2 3 30 30 H 1.09002 * 109.46868 * 54.97979 * 1 2 3 31 31 H 1.09001 * 109.47463 * 174.97438 * 1 2 3 32 32 H 0.96994 * 120.00031 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.47046 * 270.00220 * 13 12 2 34 34 H 1.09003 * 109.46939 * 150.00202 * 13 12 2 35 35 H 1.09005 * 109.46994 * 30.00299 * 13 12 2 36 36 H 1.08999 * 110.36884 * 274.67398 * 18 17 14 37 37 H 1.09004 * 110.36468 * 36.99610 * 18 17 14 38 38 H 1.09000 * 111.00314 * 155.08314 * 19 18 17 39 39 H 1.08994 * 111.00355 * 278.93767 * 19 18 17 40 40 H 1.08998 * 110.72136 * 82.85965 * 20 19 18 41 41 H 1.08996 * 110.71981 * 206.13806 * 20 19 18 42 42 H 1.07997 * 119.99795 * 359.97438 * 24 23 21 43 43 H 1.07997 * 120.00422 * 180.20628 * 25 24 23 44 44 H 1.07996 * 119.99782 * 179.78866 * 26 25 24 45 45 H 1.07998 * 120.00369 * 179.97438 * 27 26 25 46 46 H 1.07993 * 120.00034 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1347 -1.7856 -1.2292 6 6 2.3614 0.0121 -2.3577 7 7 2.7073 -0.6131 -3.4618 8 14 2.3157 1.8791 -2.3166 9 1 3.6013 2.3940 -1.7804 10 1 2.1091 2.3996 -3.6920 11 1 1.2005 2.3279 -1.4448 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4281 14 16 2.9704 0.1141 2.2863 15 8 2.6903 1.4972 2.1193 16 8 2.8226 -0.5645 3.5260 17 7 4.5437 -0.1043 1.8181 18 6 5.2967 0.7708 0.9014 19 6 6.7847 0.5395 1.2651 20 6 6.7953 -0.9792 1.5826 21 6 5.4228 -1.1997 2.2528 22 1 5.5304 -1.1804 3.3373 23 6 4.8483 -2.5223 1.8153 24 6 4.2596 -2.6423 0.5703 25 6 3.7361 -3.8566 0.1674 26 6 3.7937 -4.9488 1.0130 27 6 4.3781 -4.8276 2.2598 28 6 4.9055 -3.6144 2.6609 29 1 -0.3633 0.4339 0.9315 30 1 -0.3633 0.5898 -0.8416 31 1 -0.3634 -1.0237 -0.0900 32 1 2.9384 -0.1047 -4.2549 33 1 0.7374 -2.1443 1.9994 34 1 2.4628 -2.5819 1.9865 35 1 1.5294 -2.5969 0.4708 36 1 5.1105 0.4856 -0.1340 37 1 5.0244 1.8138 1.0633 38 1 7.4335 0.7663 0.4191 39 1 7.0682 1.1236 2.1406 40 1 6.8796 -1.5641 0.6667 41 1 7.6026 -1.2233 2.2730 42 1 4.2109 -1.7880 -0.0886 43 1 3.2791 -3.9512 -0.8065 44 1 3.3816 -5.8966 0.6995 45 1 4.4228 -5.6807 2.9205 46 1 5.3617 -3.5196 3.6352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282956640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:10 Heat of formation + Delta-G solvation = -38.666340 kcal Electronic energy + Delta-G solvation = -30482.653547 eV Core-core repulsion = 26692.245845 eV Total energy + Delta-G solvation = -3790.407702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.67673 -37.58693 -36.73736 -36.19180 -35.27888 -32.50871 -31.60323 -30.80546 -30.46357 -29.79221 -27.59437 -25.62110 -25.15456 -22.92394 -22.19012 -21.45657 -20.71457 -20.36364 -18.30422 -17.59810 -17.09292 -16.82923 -16.25783 -15.80887 -15.34411 -14.69339 -14.43063 -14.35657 -13.75320 -13.68811 -13.46586 -13.21774 -12.97719 -12.95893 -12.61266 -12.52434 -12.36563 -12.25344 -11.83980 -11.72748 -11.60896 -11.52726 -11.35208 -11.27117 -11.17161 -11.00717 -10.84924 -10.77438 -10.71080 -10.55203 -10.46324 -10.32354 -9.84861 -9.39343 -8.83802 -8.66653 -8.46681 -8.29335 -7.98953 -6.24970 -4.24699 1.15525 1.64661 1.80205 3.18805 3.29110 3.37293 3.43564 4.05578 4.17369 4.28203 4.54175 4.81018 4.85387 5.06745 5.12742 5.22176 5.22942 5.34703 5.49180 5.57177 5.68477 5.69222 5.82710 5.89390 5.96532 5.98293 5.99762 6.15593 6.17237 6.21032 6.30512 6.34097 6.41128 6.43109 6.48066 6.54301 6.59875 6.70785 6.72009 6.79541 6.99739 7.01816 7.05980 7.21842 7.39241 7.45371 7.69357 8.37776 8.80554 9.37379 10.86081 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011093 B = 0.006835 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.594444 B = 4095.684550 C = 4470.932474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.232 3.768 3 H 0.054 0.946 4 C -0.516 4.516 5 H 0.087 0.913 6 C 0.081 3.919 7 N -0.886 5.886 8 Si 0.854 3.146 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.981 5.981 13 C 0.102 3.898 14 S 2.786 3.214 15 O -0.986 6.986 16 O -0.989 6.989 17 N -1.010 6.010 18 C 0.114 3.886 19 C -0.128 4.128 20 C -0.117 4.117 21 C 0.197 3.803 22 H 0.081 0.919 23 C -0.126 4.126 24 C -0.078 4.078 25 C -0.112 4.112 26 C -0.121 4.121 27 C -0.133 4.133 28 C -0.106 4.106 29 H 0.026 0.974 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.266 0.734 33 H 0.035 0.965 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.146 0.854 43 H 0.126 0.874 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.112 -4.311 8.472 11.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.129 3.871 3 H 0.072 0.928 4 C -0.556 4.556 5 H 0.105 0.895 6 C -0.123 4.123 7 N -0.523 5.523 8 Si 0.680 3.320 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.823 5.823 13 C -0.044 4.044 14 S 2.798 3.202 15 O -0.970 6.970 16 O -0.973 6.973 17 N -0.848 5.848 18 C -0.012 4.012 19 C -0.167 4.167 20 C -0.155 4.155 21 C 0.091 3.909 22 H 0.099 0.901 23 C -0.127 4.127 24 C -0.096 4.096 25 C -0.130 4.130 26 C -0.139 4.139 27 C -0.151 4.151 28 C -0.124 4.124 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.164 0.836 43 H 0.144 0.856 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.769 -3.744 9.087 11.934 hybrid contribution -0.012 0.715 -0.554 0.905 sum 6.757 -3.028 8.533 11.298 Atomic orbital electron populations 1.22152 0.98043 1.01045 0.99005 1.19100 0.91764 0.92852 0.83395 0.92803 1.21202 1.43738 0.96118 0.94495 0.89515 1.24929 0.94264 0.97755 0.95356 1.69872 1.45066 1.35798 1.01600 0.87218 0.80123 0.87011 0.77622 1.19486 1.21159 1.18481 1.57901 1.64064 1.21424 1.38880 1.21527 0.99105 0.81944 1.01874 1.01711 0.71860 0.73226 0.73354 1.93549 1.83725 1.32637 1.87082 1.93532 1.85651 1.76143 1.41986 1.59229 1.29140 1.35623 1.60773 1.22064 0.90688 0.94246 0.94159 1.22761 0.96081 0.95982 1.01848 1.22673 0.94983 0.96613 1.01274 1.20090 0.89567 0.83072 0.98198 0.90116 1.20291 1.01501 0.95360 0.95555 1.21483 0.94129 0.98757 0.95194 1.21259 0.99119 0.92614 1.00049 1.21161 0.99664 0.98662 0.94398 1.20977 1.00178 0.97263 0.96675 1.20886 0.99966 0.92710 0.98860 0.95495 0.92809 0.92892 0.92410 0.94638 0.91966 0.90094 0.90500 0.90480 0.90074 0.90939 0.90091 0.90465 0.83598 0.85572 0.86658 0.86692 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.10 37.16 0.34 -2.63 16 2 C 0.23 5.21 2.29 -69.08 -0.16 5.06 16 3 H 0.05 1.30 4.06 -51.93 -0.21 1.09 16 4 C -0.52 -12.47 7.80 -34.44 -0.27 -12.74 16 5 H 0.09 2.19 6.77 -52.49 -0.36 1.84 16 6 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.89 -24.07 13.96 55.43 0.77 -23.30 16 8 Si 0.85 20.06 26.99 -169.99 -4.59 15.47 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.26 -6.10 6.82 56.52 0.39 -5.72 16 12 N -0.98 -19.99 2.64 -115.85 -0.31 -20.30 16 13 C 0.10 1.86 7.07 59.85 0.42 2.29 16 14 S 2.79 56.91 6.00 -107.50 -0.65 56.26 16 15 O -0.99 -22.62 16.02 -57.18 -0.92 -23.54 16 16 O -0.99 -21.07 16.79 -57.18 -0.96 -22.03 16 17 N -1.01 -17.40 2.72 -105.64 -0.29 -17.69 16 18 C 0.11 1.81 7.11 -2.53 -0.02 1.79 16 19 C -0.13 -1.52 7.08 -24.58 -0.17 -1.69 16 20 C -0.12 -1.38 6.45 -24.90 -0.16 -1.54 16 21 C 0.20 2.88 3.03 -68.11 -0.21 2.68 16 22 H 0.08 1.12 8.02 -51.93 -0.42 0.71 16 23 C -0.13 -1.90 3.42 -104.63 -0.36 -2.26 16 24 C -0.08 -1.29 6.04 -39.59 -0.24 -1.53 16 25 C -0.11 -1.76 8.05 -39.58 -0.32 -2.08 16 26 C -0.12 -1.62 10.04 -39.58 -0.40 -2.02 16 27 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 28 C -0.11 -1.44 9.45 -39.58 -0.37 -1.82 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 1.04 7.84 -51.93 -0.41 0.63 16 32 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.10 4.67 -51.93 -0.24 0.86 16 35 H 0.08 1.50 5.59 -51.93 -0.29 1.21 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.08 1.25 7.78 -51.93 -0.40 0.85 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.00 7.78 -51.93 -0.40 0.59 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.15 2.82 6.73 -52.49 -0.35 2.46 16 43 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 44 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.12 1.37 8.04 -52.49 -0.42 0.94 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -29.26 365.33 -10.71 -39.98 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.88 Total: 6.24 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -2.41 Total: -16.61 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.18 Total: -61.28 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -1.88 Total: -45.56 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.59 Total: 15.47 kcal Atomic # 16 Polarization: 56.91 SS G_CDS: -0.65 Total: 56.26 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.26 -10.71 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282956640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.310 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds