Wall clock time and date at job start Tue Mar 31 2020 20:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47581 * 2 1 4 4 C 1.50703 * 109.47166 * 239.99492 * 2 1 3 5 5 H 1.07995 * 120.00411 * 275.05285 * 4 2 1 6 6 C 1.37882 * 119.99649 * 95.06053 * 4 2 1 7 7 N 1.31516 * 120.00101 * 184.90646 * 6 4 2 8 8 Si 1.86800 * 119.99903 * 4.89698 * 6 4 2 9 9 H 1.48501 * 109.46817 * 84.83596 * 8 6 4 10 10 H 1.48502 * 109.47111 * 204.83306 * 8 6 4 11 11 H 1.48495 * 109.47360 * 324.83440 * 8 6 4 12 12 N 1.46504 * 109.46893 * 120.00196 * 2 1 3 13 13 C 1.46498 * 120.00324 * 59.99675 * 12 2 1 14 14 S 1.65607 * 119.99768 * 239.99786 * 12 2 1 15 15 O 1.42095 * 106.39955 * 23.54229 * 14 12 2 16 16 O 1.42098 * 106.40046 * 156.45455 * 14 12 2 17 17 N 1.65594 * 107.21867 * 270.00120 * 14 12 2 18 18 C 1.47420 * 125.65254 * 90.02362 * 17 14 12 19 19 C 1.54913 * 104.83396 * 155.83247 * 18 17 14 20 20 C 1.55160 * 101.58068 * 37.01360 * 19 18 17 21 21 C 1.47029 * 125.64415 * 269.71696 * 17 14 12 22 22 H 1.08998 * 109.88094 * 300.51342 * 21 17 14 23 23 C 1.50694 * 109.88479 * 61.68073 * 21 17 14 24 24 C 1.38237 * 120.00287 * 39.72497 * 23 21 17 25 25 C 1.38229 * 120.00395 * 179.81328 * 24 23 21 26 26 C 1.38243 * 119.99748 * 0.41561 * 25 24 23 27 27 C 1.38232 * 120.00014 * 359.81595 * 26 25 24 28 28 C 1.38237 * 119.99980 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47037 * 294.97868 * 1 2 3 30 30 H 1.09002 * 109.46868 * 54.97979 * 1 2 3 31 31 H 1.09001 * 109.47463 * 174.97438 * 1 2 3 32 32 H 0.96994 * 120.00031 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.47046 * 270.00220 * 13 12 2 34 34 H 1.09003 * 109.46939 * 150.00202 * 13 12 2 35 35 H 1.09005 * 109.46994 * 30.00299 * 13 12 2 36 36 H 1.08999 * 110.36884 * 274.67398 * 18 17 14 37 37 H 1.09004 * 110.36468 * 36.99610 * 18 17 14 38 38 H 1.09000 * 111.00314 * 155.08314 * 19 18 17 39 39 H 1.08994 * 111.00355 * 278.93767 * 19 18 17 40 40 H 1.08998 * 110.72136 * 82.85965 * 20 19 18 41 41 H 1.08996 * 110.71981 * 206.13806 * 20 19 18 42 42 H 1.07997 * 119.99795 * 359.97438 * 24 23 21 43 43 H 1.07997 * 120.00422 * 180.20628 * 25 24 23 44 44 H 1.07996 * 119.99782 * 179.78866 * 26 25 24 45 45 H 1.07998 * 120.00369 * 179.97438 * 27 26 25 46 46 H 1.07993 * 120.00034 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1347 -1.7856 -1.2292 6 6 2.3614 0.0121 -2.3577 7 7 2.7073 -0.6131 -3.4618 8 14 2.3157 1.8791 -2.3166 9 1 3.6013 2.3940 -1.7804 10 1 2.1091 2.3996 -3.6920 11 1 1.2005 2.3279 -1.4448 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4281 14 16 2.9704 0.1141 2.2863 15 8 2.6903 1.4972 2.1193 16 8 2.8226 -0.5645 3.5260 17 7 4.5437 -0.1043 1.8181 18 6 5.2967 0.7708 0.9014 19 6 6.7847 0.5395 1.2651 20 6 6.7953 -0.9792 1.5826 21 6 5.4228 -1.1997 2.2528 22 1 5.5304 -1.1804 3.3373 23 6 4.8483 -2.5223 1.8153 24 6 4.2596 -2.6423 0.5703 25 6 3.7361 -3.8566 0.1674 26 6 3.7937 -4.9488 1.0130 27 6 4.3781 -4.8276 2.2598 28 6 4.9055 -3.6144 2.6609 29 1 -0.3633 0.4339 0.9315 30 1 -0.3633 0.5898 -0.8416 31 1 -0.3634 -1.0237 -0.0900 32 1 2.9384 -0.1047 -4.2549 33 1 0.7374 -2.1443 1.9994 34 1 2.4628 -2.5819 1.9865 35 1 1.5294 -2.5969 0.4708 36 1 5.1105 0.4856 -0.1340 37 1 5.0244 1.8138 1.0633 38 1 7.4335 0.7663 0.4191 39 1 7.0682 1.1236 2.1406 40 1 6.8796 -1.5641 0.6667 41 1 7.6026 -1.2233 2.2730 42 1 4.2109 -1.7880 -0.0886 43 1 3.2791 -3.9512 -0.8065 44 1 3.3816 -5.8966 0.6995 45 1 4.4228 -5.6807 2.9205 46 1 5.3617 -3.5196 3.6352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282956640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:09 Heat of formation + Delta-G solvation = -56.212368 kcal Electronic energy + Delta-G solvation = -30483.414400 eV Core-core repulsion = 26692.245845 eV Total energy + Delta-G solvation = -3791.168555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.82856 -38.77256 -38.43471 -37.86011 -36.97632 -34.44228 -32.73662 -32.02804 -31.73634 -31.36338 -28.73239 -27.32542 -26.94176 -24.11405 -23.32576 -22.66603 -22.24977 -21.66698 -19.77256 -19.33559 -18.65455 -18.45090 -17.58950 -17.28667 -16.71013 -16.24921 -15.84626 -15.54336 -15.34620 -15.06144 -14.77693 -14.55558 -14.49218 -14.34945 -14.15126 -14.08444 -13.73483 -13.52182 -13.42693 -13.32460 -13.20868 -13.06424 -12.96589 -12.67892 -12.66036 -12.52888 -12.42958 -12.07991 -12.03105 -11.88129 -11.77846 -11.66171 -11.51907 -11.24468 -10.69762 -10.13511 -9.72002 -9.54778 -9.44261 -8.26523 -6.26525 -0.41647 0.51879 0.66809 1.28827 1.36200 1.44335 1.90221 2.32419 2.50635 3.00077 3.09642 3.18215 3.68460 3.72464 3.92000 4.06415 4.13171 4.18882 4.29890 4.42971 4.44372 4.46594 4.60325 4.68143 4.69097 4.75678 4.82227 4.83308 4.84555 4.94514 4.97007 5.00862 5.05467 5.10335 5.14194 5.21617 5.28402 5.35418 5.38628 5.45872 5.49135 5.57705 5.70051 5.83863 5.89811 5.98968 6.25565 6.40116 6.79905 7.37174 8.87448 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011093 B = 0.006835 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.594444 B = 4095.684550 C = 4470.932474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.234 3.766 3 H 0.039 0.961 4 C -0.496 4.496 5 H 0.070 0.930 6 C 0.043 3.957 7 N -0.925 5.925 8 Si 0.887 3.113 9 H -0.264 1.264 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.985 5.985 13 C 0.105 3.895 14 S 2.795 3.205 15 O -1.015 7.015 16 O -0.997 6.997 17 N -1.010 6.010 18 C 0.104 3.896 19 C -0.116 4.116 20 C -0.108 4.108 21 C 0.187 3.813 22 H 0.095 0.905 23 C -0.133 4.133 24 C -0.092 4.092 25 C -0.128 4.128 26 C -0.117 4.117 27 C -0.125 4.125 28 C -0.107 4.107 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.265 0.735 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.105 0.895 44 H 0.138 0.862 45 H 0.148 0.852 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.346 -5.238 10.798 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.130 3.870 3 H 0.057 0.943 4 C -0.535 4.535 5 H 0.088 0.912 6 C -0.157 4.157 7 N -0.564 5.564 8 Si 0.713 3.287 9 H -0.189 1.189 10 H -0.210 1.210 11 H -0.183 1.183 12 N -0.826 5.826 13 C -0.041 4.041 14 S 2.808 3.192 15 O -0.999 6.999 16 O -0.981 6.981 17 N -0.849 5.849 18 C -0.021 4.021 19 C -0.155 4.155 20 C -0.146 4.146 21 C 0.082 3.918 22 H 0.112 0.888 23 C -0.135 4.135 24 C -0.110 4.110 25 C -0.146 4.146 26 C -0.135 4.135 27 C -0.143 4.143 28 C -0.126 4.126 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.123 0.877 44 H 0.156 0.844 45 H 0.166 0.834 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.988 -4.674 11.424 14.702 hybrid contribution -0.369 0.899 -1.205 1.548 sum 7.619 -3.775 10.219 13.294 Atomic orbital electron populations 1.22115 0.96693 1.01757 0.99659 1.18956 0.92800 0.91926 0.83348 0.94294 1.21246 1.42039 0.95355 0.94903 0.91206 1.25367 0.94714 1.00294 0.95331 1.69957 1.47450 1.36800 1.02234 0.86662 0.80339 0.84162 0.77543 1.18932 1.21002 1.18294 1.57733 1.64758 1.22111 1.37977 1.21569 0.99869 0.80832 1.01800 1.01200 0.72424 0.72451 0.73170 1.93506 1.84593 1.34383 1.87452 1.93510 1.86181 1.76102 1.42334 1.59005 1.28346 1.36801 1.60760 1.22190 0.93615 0.93464 0.92809 1.22771 0.92959 0.96389 1.03338 1.22678 0.94288 0.96219 1.01460 1.20451 0.90313 0.81924 0.99151 0.88760 1.20374 1.01628 0.96341 0.95123 1.21159 0.96162 0.97978 0.95750 1.21162 1.00044 0.93465 0.99914 1.21388 0.99152 0.98634 0.94355 1.21362 0.98473 0.98028 0.96463 1.21226 0.99519 0.92350 0.99491 0.94094 0.93080 0.92012 0.92560 0.93496 0.91164 0.90773 0.92922 0.91323 0.88343 0.88944 0.91018 0.87027 0.87113 0.87659 0.84438 0.83379 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.89 9.10 71.98 0.65 -5.23 16 2 C 0.23 10.64 2.29 44.24 0.10 10.74 16 3 H 0.04 1.90 4.06 -2.39 -0.01 1.89 16 4 C -0.50 -24.72 7.80 25.60 0.20 -24.52 16 5 H 0.07 3.70 6.77 -2.91 -0.02 3.68 16 6 C 0.04 2.28 5.47 84.66 0.46 2.74 16 7 N -0.92 -52.02 13.96 21.45 0.30 -51.72 16 8 Si 0.89 41.87 26.99 68.60 1.85 43.72 16 9 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 11 H -0.26 -12.03 6.82 99.48 0.68 -11.36 16 12 N -0.98 -40.25 2.64 -520.44 -1.37 -41.62 16 13 C 0.10 3.81 7.07 127.77 0.90 4.71 16 14 S 2.80 113.30 6.00 -56.49 -0.34 112.96 16 15 O -1.01 -46.77 16.02 -128.00 -2.05 -48.82 16 16 O -1.00 -41.20 16.79 -128.00 -2.15 -43.35 16 17 N -1.01 -34.27 2.72 -488.12 -1.33 -35.60 16 18 C 0.10 3.33 7.11 86.86 0.62 3.95 16 19 C -0.12 -2.50 7.08 31.99 0.23 -2.27 16 20 C -0.11 -2.27 6.45 31.78 0.20 -2.07 16 21 C 0.19 5.11 3.03 44.59 0.14 5.25 16 22 H 0.09 2.33 8.02 -2.39 -0.02 2.31 16 23 C -0.13 -3.85 3.42 -19.87 -0.07 -3.91 16 24 C -0.09 -3.10 6.04 22.27 0.13 -2.97 16 25 C -0.13 -4.05 8.05 22.27 0.18 -3.87 16 26 C -0.12 -2.93 10.04 22.27 0.22 -2.71 16 27 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 28 C -0.11 -2.60 9.45 22.27 0.21 -2.39 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 2.40 7.84 -2.39 -0.02 2.38 16 32 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 2.43 4.67 -2.39 -0.01 2.42 16 35 H 0.07 2.79 5.59 -2.38 -0.01 2.77 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 2.26 7.78 -2.38 -0.02 2.24 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.67 7.78 -2.39 -0.02 1.65 16 41 H 0.11 1.63 8.14 -2.39 -0.02 1.62 16 42 H 0.11 4.52 6.73 -2.91 -0.02 4.50 16 43 H 0.11 3.68 8.06 -2.91 -0.02 3.66 16 44 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 45 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 46 H 0.14 2.69 8.04 -2.91 -0.02 2.67 16 Total: -1.00 -64.21 365.33 0.27 -63.95 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.94 Total: 25.58 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 4.41 Total: -25.10 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -2.40 Total: -128.94 kcal Atomic # 8 Polarization: -87.97 SS G_CDS: -4.20 Total: -92.17 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.85 Total: 43.72 kcal Atomic # 16 Polarization: 113.30 SS G_CDS: -0.34 Total: 112.96 kcal Total: -64.21 0.27 -63.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282956640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.733 kcal (2) G-P(sol) polarization free energy of solvation -64.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds