Wall clock time and date at job start Tue Mar 31 2020 20:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47322 * 2 1 4 4 C 1.50697 * 109.47161 * 239.99574 * 2 1 3 5 5 H 1.07998 * 120.00515 * 240.00617 * 4 2 1 6 6 C 1.37882 * 119.99783 * 60.00444 * 4 2 1 7 7 N 1.31508 * 119.99970 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99883 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47072 * 90.00139 * 8 6 4 10 10 H 1.48499 * 109.47212 * 210.00142 * 8 6 4 11 11 H 1.48497 * 109.46910 * 330.00035 * 8 6 4 12 12 N 1.46504 * 109.46590 * 119.99986 * 2 1 3 13 13 C 1.46500 * 119.99937 * 60.00060 * 12 2 1 14 14 S 1.65596 * 119.99863 * 239.99667 * 12 2 1 15 15 O 1.42098 * 106.40300 * 156.46298 * 14 12 2 16 16 O 1.42099 * 106.40331 * 23.54242 * 14 12 2 17 17 N 1.65604 * 107.22092 * 270.00168 * 14 12 2 18 18 C 1.46502 * 119.99738 * 64.99731 * 17 14 12 19 19 C 1.53781 * 113.61325 * 145.00370 * 18 17 14 20 20 C 1.53774 * 87.08111 * 89.11658 * 19 18 17 21 21 C 1.50701 * 113.61298 * 139.98317 * 20 19 18 22 22 C 1.38235 * 119.99808 * 119.99933 * 21 20 19 23 23 C 1.38243 * 119.99602 * 179.97438 * 22 21 20 24 24 C 1.38231 * 120.00070 * 0.07188 * 23 22 21 25 25 C 1.38234 * 119.99869 * 359.88510 * 24 23 22 26 26 C 1.38230 * 119.99865 * 299.97679 * 21 20 19 27 27 C 1.53777 * 87.08353 * 25.43241 * 20 19 18 28 28 H 1.08995 * 109.47322 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47256 * 300.00801 * 1 2 3 30 30 H 1.09004 * 109.46444 * 60.00266 * 1 2 3 31 31 H 0.96998 * 120.00036 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47149 * 269.99588 * 13 12 2 33 33 H 1.08995 * 109.47491 * 30.00020 * 13 12 2 34 34 H 1.08999 * 109.46799 * 150.00250 * 13 12 2 35 35 H 0.96991 * 120.00011 * 245.00287 * 17 14 12 36 36 H 1.09002 * 112.85204 * 13.80606 * 18 17 14 37 37 H 1.09005 * 113.61389 * 334.56811 * 19 18 17 38 38 H 1.08999 * 113.61425 * 203.66775 * 19 18 17 39 39 H 1.09002 * 113.61123 * 270.79872 * 20 19 18 40 40 H 1.08000 * 120.00616 * 359.70324 * 22 21 20 41 41 H 1.08001 * 119.99556 * 179.97438 * 23 22 21 42 42 H 1.08005 * 119.99882 * 180.02562 * 24 23 22 43 43 H 1.08007 * 119.99474 * 180.10845 * 25 24 23 44 44 H 1.08001 * 120.00350 * 359.97438 * 26 21 20 45 45 H 1.08997 * 113.61365 * 89.11660 * 27 20 19 46 46 H 1.08997 * 113.61811 * 220.02137 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.3448 -2.1617 -4.4124 10 1 2.4875 -0.1404 -5.1120 11 1 3.6309 -1.7567 -3.7118 12 7 2.0182 -0.6906 1.1962 13 6 1.6642 -2.0932 1.4280 14 16 2.9703 0.1141 2.2863 15 8 2.8226 -0.5646 3.5259 16 8 2.6904 1.4972 2.1193 17 7 4.5437 -0.1044 1.8182 18 6 5.0139 0.4528 0.5474 19 6 6.4711 0.9421 0.5910 20 6 6.8791 -0.4820 0.1787 21 6 8.0044 -0.5215 -0.8228 22 6 9.1870 -1.1648 -0.5087 23 6 10.2190 -1.2015 -1.4277 24 6 10.0691 -0.5936 -2.6601 25 6 8.8862 0.0489 -2.9744 26 6 7.8539 0.0852 -2.0557 27 6 5.4846 -0.6132 -0.4560 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 0.7091 1.1613 -3.4844 32 1 0.7374 -2.1444 1.9993 33 1 1.5294 -2.5969 0.4709 34 1 2.4626 -2.5819 1.9865 35 1 5.1539 -0.6012 2.3852 36 1 4.3218 1.1795 0.1219 37 1 6.8084 1.2212 1.5893 38 1 6.7009 1.6971 -0.1608 39 1 7.0406 -1.1517 1.0235 40 1 9.3062 -1.6350 0.4562 41 1 11.1431 -1.7038 -1.1821 42 1 10.8753 -0.6226 -3.3782 43 1 8.7684 0.5224 -3.9380 44 1 6.9298 0.5871 -2.3014 45 1 5.4447 -0.2835 -1.4942 46 1 5.0253 -1.5898 -0.3030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282969453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:42 Heat of formation + Delta-G solvation = -50.048337 kcal Electronic energy + Delta-G solvation = -28474.104104 eV Core-core repulsion = 24683.202841 eV Total energy + Delta-G solvation = -3790.901262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.06378 -39.03601 -38.28011 -37.82933 -36.88552 -34.44693 -34.12836 -31.77410 -31.22257 -30.87286 -27.25003 -26.96226 -26.49448 -25.89508 -23.47872 -22.59535 -22.40054 -20.66304 -19.97302 -18.81797 -18.35702 -18.25301 -17.75051 -17.21392 -16.57814 -16.27868 -16.04971 -15.77389 -15.21378 -15.12649 -14.78230 -14.75357 -14.37554 -14.27684 -14.02169 -13.69666 -13.53452 -13.39349 -13.33377 -13.16625 -13.15195 -13.11680 -12.97018 -12.71304 -12.62671 -12.42461 -12.19791 -12.09588 -12.05924 -11.85659 -11.68526 -11.57779 -11.13409 -10.97751 -10.44350 -10.33856 -9.75260 -9.62095 -9.47269 -8.03156 -6.15490 -0.27906 0.50585 0.56467 1.45796 1.49986 1.56807 2.02201 2.48719 2.65147 2.90769 3.26407 3.43251 3.64595 3.80730 3.85879 4.03355 4.13571 4.17030 4.21842 4.30035 4.34251 4.41619 4.66889 4.71438 4.74943 4.83339 4.84420 4.90537 5.00634 5.01294 5.07118 5.12902 5.19800 5.21281 5.22503 5.29356 5.30124 5.54759 5.65606 5.66789 5.69004 5.73963 5.85103 5.89260 6.12184 6.19495 6.26928 6.35730 6.93545 7.53357 9.01660 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010160 B = 0.004841 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.108892 B = 5782.659553 C = 7799.470470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.274 3.726 3 H 0.026 0.974 4 C -0.511 4.511 5 H 0.072 0.928 6 C 0.023 3.977 7 N -0.918 5.918 8 Si 0.944 3.056 9 H -0.283 1.283 10 H -0.292 1.292 11 H -0.261 1.261 12 N -0.995 5.995 13 C 0.102 3.898 14 S 2.799 3.201 15 O -1.009 7.009 16 O -1.018 7.018 17 N -1.094 6.094 18 C 0.128 3.872 19 C -0.125 4.125 20 C -0.064 4.064 21 C -0.076 4.076 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.131 4.131 26 C -0.134 4.134 27 C -0.132 4.132 28 H 0.042 0.958 29 H 0.015 0.985 30 H 0.069 0.931 31 H 0.261 0.739 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.423 0.577 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.130 0.870 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.394 -5.269 2.911 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.170 3.830 3 H 0.044 0.956 4 C -0.550 4.550 5 H 0.090 0.910 6 C -0.177 4.177 7 N -0.558 5.558 8 Si 0.770 3.230 9 H -0.209 1.209 10 H -0.219 1.219 11 H -0.185 1.185 12 N -0.837 5.837 13 C -0.044 4.044 14 S 2.808 3.192 15 O -0.993 6.993 16 O -1.001 7.001 17 N -0.854 5.854 18 C 0.020 3.980 19 C -0.164 4.164 20 C -0.082 4.082 21 C -0.076 4.076 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.152 4.152 25 C -0.149 4.149 26 C -0.152 4.152 27 C -0.171 4.171 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.259 0.741 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.155 0.845 41 H 0.160 0.840 42 H 0.157 0.843 43 H 0.148 0.852 44 H 0.134 0.866 45 H 0.100 0.900 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.879 -4.553 3.454 16.876 hybrid contribution 0.014 -0.479 -1.230 1.320 sum 15.893 -5.033 2.224 16.818 Atomic orbital electron populations 1.21964 0.98346 0.99928 0.99795 1.18404 0.91631 0.91454 0.81497 0.95601 1.21518 1.30830 1.12679 0.90000 0.90991 1.25524 0.95360 0.95461 1.01310 1.70007 1.37748 1.24042 1.23986 0.85777 0.79211 0.78212 0.79765 1.20894 1.21871 1.18522 1.57572 1.65093 1.22396 1.38641 1.21350 1.00299 0.80513 1.02191 1.01145 0.73175 0.72738 0.72178 1.93528 1.86454 1.76127 1.43184 1.93540 1.84764 1.34872 1.86941 1.55400 1.29330 1.70194 1.30514 1.21533 0.96984 0.96063 0.83434 1.23362 0.93290 0.96556 1.03167 1.21571 0.91554 0.97894 0.97176 1.19865 0.95381 0.97614 0.94764 1.21319 0.92931 0.99588 1.00488 1.21451 0.99526 0.99505 0.93846 1.21429 0.97877 0.98242 0.97649 1.21385 0.93860 0.99887 0.99779 1.21228 0.99348 1.00413 0.94254 1.23402 0.95048 0.99888 0.98788 0.93883 0.96570 0.91192 0.93001 0.93282 0.90435 0.90726 0.74115 0.90300 0.89372 0.88813 0.86915 0.84499 0.83972 0.84297 0.85224 0.86581 0.89985 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.62 8.97 71.98 0.65 -5.98 16 2 C 0.27 12.87 2.62 44.24 0.12 12.99 16 3 H 0.03 1.40 6.91 -2.39 -0.02 1.38 16 4 C -0.51 -24.30 7.99 25.60 0.20 -24.09 16 5 H 0.07 3.26 7.33 -2.91 -0.02 3.24 16 6 C 0.02 1.15 5.30 84.66 0.45 1.60 16 7 N -0.92 -49.47 11.32 21.45 0.24 -49.22 16 8 Si 0.94 40.10 29.54 68.60 2.03 42.13 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 12 N -1.00 -39.09 3.12 -520.46 -1.62 -40.72 16 13 C 0.10 3.36 9.28 127.77 1.19 4.55 16 14 S 2.80 105.17 6.06 -56.49 -0.34 104.82 16 15 O -1.01 -39.13 17.21 -128.00 -2.20 -41.33 16 16 O -1.02 -46.33 16.22 -128.00 -2.08 -48.41 16 17 N -1.09 -31.78 5.79 -167.19 -0.97 -32.75 16 18 C 0.13 3.87 4.53 45.52 0.21 4.08 16 19 C -0.12 -2.95 7.33 31.12 0.23 -2.72 16 20 C -0.06 -1.42 3.80 -11.02 -0.04 -1.46 16 21 C -0.08 -1.73 5.29 -19.87 -0.11 -1.84 16 22 C -0.13 -2.42 9.71 22.27 0.22 -2.21 16 23 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 24 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 25 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 26 C -0.13 -3.27 8.61 22.27 0.19 -3.08 16 27 C -0.13 -3.77 7.25 31.12 0.23 -3.55 16 28 H 0.04 1.87 7.67 -2.39 -0.02 1.86 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 3.63 6.07 -2.38 -0.01 3.62 16 31 H 0.26 13.57 8.31 -92.71 -0.77 12.79 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 2.59 7.02 -2.39 -0.02 2.57 16 34 H 0.07 2.06 7.79 -2.39 -0.02 2.04 16 35 H 0.42 9.44 8.78 -96.75 -0.85 8.59 16 36 H 0.08 2.93 7.77 -2.39 -0.02 2.91 16 37 H 0.09 1.82 8.14 -2.38 -0.02 1.81 16 38 H 0.09 2.21 7.72 -2.39 -0.02 2.19 16 39 H 0.11 2.08 8.06 -2.39 -0.02 2.06 16 40 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 41 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 44 H 0.12 2.97 6.66 -2.91 -0.02 2.95 16 45 H 0.08 2.56 6.31 -2.39 -0.02 2.55 16 46 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -63.63 382.62 -0.62 -64.25 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.13 Total: 29.72 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 4.19 Total: -28.50 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -2.35 Total: -122.69 kcal Atomic # 8 Polarization: -85.46 SS G_CDS: -4.28 Total: -89.74 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Atomic # 16 Polarization: 105.17 SS G_CDS: -0.34 Total: 104.82 kcal Total: -63.63 -0.62 -64.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282969453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.205 kcal (2) G-P(sol) polarization free energy of solvation -63.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds