Wall clock time and date at job start Tue Mar 31 2020 20:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47197 * 89.99842 * 8 6 4 10 10 H 1.48495 * 109.47693 * 210.00055 * 8 6 4 11 11 H 1.48508 * 109.46868 * 330.00146 * 8 6 4 12 12 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 13 13 C 1.46497 * 119.99968 * 59.99779 * 12 2 1 14 14 S 1.65601 * 119.99824 * 239.99540 * 12 2 1 15 15 O 1.42102 * 106.40028 * 203.53935 * 14 12 2 16 16 O 1.42093 * 106.40468 * 336.46210 * 14 12 2 17 17 N 1.65603 * 107.21673 * 90.00348 * 14 12 2 18 18 C 1.47426 * 125.64646 * 269.69149 * 17 14 12 19 19 C 1.55127 * 104.72459 * 155.81763 * 18 17 14 20 20 C 1.55158 * 101.48589 * 37.29516 * 19 18 17 21 21 H 1.08993 * 110.87374 * 82.76612 * 20 19 18 22 22 C 1.50696 * 110.72152 * 205.97388 * 20 19 18 23 23 C 1.38239 * 120.00184 * 53.24075 * 22 20 19 24 24 C 1.38232 * 120.00092 * 179.81220 * 23 22 20 25 25 C 1.38241 * 119.99906 * 0.39930 * 24 23 22 26 26 C 1.38229 * 119.99884 * 359.86096 * 25 24 23 27 27 C 1.38233 * 120.00280 * 359.94789 * 26 25 24 28 28 C 1.47022 * 125.64979 * 89.99641 * 17 14 12 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47466 * 90.00240 * 13 12 2 34 34 H 1.09002 * 109.47260 * 210.00281 * 13 12 2 35 35 H 1.09000 * 109.47562 * 329.99730 * 13 12 2 36 36 H 1.08998 * 110.36635 * 274.74960 * 18 17 14 37 37 H 1.09005 * 110.36531 * 37.06680 * 18 17 14 38 38 H 1.09000 * 111.18864 * 279.18918 * 19 18 17 39 39 H 1.08993 * 110.90736 * 155.27642 * 19 18 17 40 40 H 1.08001 * 120.00025 * 0.02562 * 23 22 20 41 41 H 1.08001 * 120.00325 * 180.24066 * 24 23 22 42 42 H 1.08006 * 119.99747 * 179.83108 * 25 24 23 43 43 H 1.08008 * 120.00052 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.00528 * 179.97438 * 27 26 25 45 45 H 1.08992 * 109.88269 * 300.44048 * 28 17 14 46 46 H 1.08996 * 109.88068 * 61.60755 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4872 -0.1404 -5.1121 11 1 3.6308 -1.7567 -3.7119 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 16 2.9705 0.1142 2.2862 15 8 3.7118 -0.8790 2.9814 16 8 3.5795 1.1829 1.5748 17 7 1.9608 0.8090 3.3998 18 6 1.3786 2.1602 3.3065 19 6 0.0974 2.0986 4.1789 20 6 0.5622 1.1889 5.3467 21 1 1.1037 1.7656 6.0965 22 6 -0.6119 0.4782 5.9689 23 6 -1.4755 -0.2547 5.1763 24 6 -2.5503 -0.9097 5.7476 25 6 -2.7664 -0.8252 7.1104 26 6 -1.9060 -0.0880 7.9022 27 6 -0.8289 0.5639 7.3314 28 6 1.5016 0.1830 4.6483 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.7087 1.1612 -3.4844 33 1 2.4156 -2.7377 0.9717 34 1 1.6237 -2.2852 2.5002 35 1 0.6903 -2.3002 0.9847 36 1 2.0739 2.9010 3.7012 37 1 1.1223 2.3923 2.2727 38 1 -0.7291 1.6429 3.6336 39 1 -0.1749 3.0901 4.5406 40 1 -1.3084 -0.3182 4.1112 41 1 -3.2228 -1.4855 5.1289 42 1 -3.6078 -1.3348 7.5563 43 1 -2.0750 -0.0216 8.9669 44 1 -0.1568 1.1402 7.9499 45 1 0.9603 -0.7362 4.4248 46 1 2.3555 -0.0338 5.2901 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282988288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:21 Heat of formation + Delta-G solvation = -65.859482 kcal Electronic energy + Delta-G solvation = -28444.356828 eV Core-core repulsion = 24652.769943 eV Total energy + Delta-G solvation = -3791.586885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.70620 -38.73561 -38.39775 -37.91351 -36.94078 -34.54816 -33.56722 -31.71617 -30.96041 -30.68240 -29.07995 -27.31210 -27.02822 -24.20136 -23.60740 -22.98409 -22.42588 -21.00225 -19.95810 -18.93270 -18.69713 -18.20085 -17.73623 -17.24615 -16.71767 -16.39327 -15.83510 -15.59090 -15.39050 -14.97230 -14.79083 -14.56033 -14.51017 -14.26164 -14.02000 -13.88257 -13.74886 -13.60604 -13.41974 -13.27878 -13.19084 -13.03100 -12.81027 -12.80627 -12.62314 -12.50276 -12.26750 -12.25577 -12.17822 -12.03539 -11.92530 -11.67515 -11.48331 -11.17141 -10.52293 -10.08193 -9.73163 -9.68304 -9.50571 -8.13159 -6.26745 -0.44298 0.49811 0.58385 1.40705 1.42907 1.52393 1.99576 2.41380 2.55065 2.89358 3.14858 3.22375 3.56455 3.73306 3.88516 4.03699 4.12090 4.22823 4.32189 4.34433 4.40287 4.46555 4.56160 4.63341 4.69865 4.75612 4.78949 4.87328 4.93100 4.95862 4.97731 5.01011 5.08459 5.13238 5.15443 5.18742 5.24858 5.31367 5.39744 5.59988 5.66229 5.71451 5.75668 5.80921 5.85947 6.12277 6.19722 6.28797 6.80208 7.42155 8.90886 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.003496 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.314240 B = 8007.392088 C = 8637.697832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.274 3.726 3 H 0.024 0.976 4 C -0.541 4.541 5 H 0.054 0.946 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.276 1.276 12 N -0.997 5.997 13 C 0.106 3.894 14 S 2.804 3.196 15 O -1.006 7.006 16 O -1.011 7.011 17 N -1.018 6.018 18 C 0.112 3.888 19 C -0.111 4.111 20 C -0.047 4.047 21 H 0.113 0.887 22 C -0.080 4.080 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.130 4.130 26 C -0.125 4.125 27 C -0.119 4.119 28 C 0.123 3.877 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.265 0.735 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.065 0.935 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.836 -0.012 21.032 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.170 3.830 3 H 0.042 0.958 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.780 3.220 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.201 1.201 12 N -0.839 5.839 13 C -0.040 4.040 14 S 2.815 3.185 15 O -0.991 6.991 16 O -0.995 6.995 17 N -0.860 5.860 18 C -0.013 4.013 19 C -0.150 4.150 20 C -0.067 4.067 21 H 0.132 0.868 22 C -0.081 4.081 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.148 4.148 26 C -0.143 4.143 27 C -0.137 4.137 28 C -0.002 4.002 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.147 0.853 42 H 0.156 0.844 43 H 0.160 0.840 44 H 0.158 0.842 45 H 0.084 0.916 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.875 0.101 20.816 22.256 hybrid contribution 0.129 -0.467 -1.428 1.508 sum -7.745 -0.366 19.388 20.881 Atomic orbital electron populations 1.21881 0.96669 1.00125 1.00446 1.18401 0.92339 0.91200 0.81033 0.95832 1.21645 1.31796 1.13048 0.91580 0.92796 1.25612 0.95192 0.95698 1.01555 1.69961 1.37169 1.23537 1.24384 0.85614 0.78753 0.78493 0.79112 1.19396 1.20779 1.20139 1.57694 1.70056 1.20950 1.35156 1.21302 1.01726 0.80447 1.00494 1.00955 0.73485 0.72162 0.71879 1.93499 1.69859 1.60840 1.74860 1.93536 1.75195 1.57401 1.73359 1.58992 1.66898 1.25973 1.34131 1.22234 0.95583 0.82516 1.00937 1.22934 0.95825 1.01450 0.94750 1.21193 0.93126 0.95127 0.97249 0.86848 1.19704 0.95991 0.98286 0.94108 1.21176 0.95467 0.97880 1.00012 1.21372 0.97841 0.99655 0.95908 1.21454 1.00187 0.99401 0.93768 1.21447 0.94795 0.97144 1.00922 1.21322 0.98453 0.99975 0.93919 1.21973 0.97983 0.96300 0.83934 0.93983 0.94636 0.91422 0.92571 0.94029 0.90739 0.90250 0.90093 0.92072 0.90655 0.87384 0.86630 0.85253 0.84434 0.83995 0.84157 0.91625 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.95 71.98 0.64 -5.24 16 2 C 0.27 13.65 2.62 44.25 0.12 13.77 16 3 H 0.02 1.34 6.91 -2.39 -0.02 1.32 16 4 C -0.54 -29.77 8.37 25.60 0.21 -29.56 16 5 H 0.05 2.97 7.65 -2.91 -0.02 2.95 16 6 C 0.02 1.07 5.30 84.65 0.45 1.52 16 7 N -0.91 -51.17 11.32 21.44 0.24 -50.93 16 8 Si 0.95 43.66 29.54 68.60 2.03 45.68 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 N -1.00 -42.32 3.12 -520.44 -1.62 -43.94 16 13 C 0.11 3.79 9.53 127.77 1.22 5.01 16 14 S 2.80 115.02 6.30 -56.49 -0.36 114.66 16 15 O -1.01 -43.06 16.79 -128.00 -2.15 -45.21 16 16 O -1.01 -49.65 16.28 -128.00 -2.08 -51.73 16 17 N -1.02 -31.28 3.75 -506.01 -1.90 -33.18 16 18 C 0.11 2.96 6.99 86.93 0.61 3.57 16 19 C -0.11 -2.13 6.47 32.06 0.21 -1.92 16 20 C -0.05 -0.85 3.17 -10.35 -0.03 -0.88 16 21 H 0.11 1.58 7.95 -2.39 -0.02 1.56 16 22 C -0.08 -1.44 4.92 -19.87 -0.10 -1.54 16 23 C -0.13 -2.50 8.16 22.27 0.18 -2.32 16 24 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 25 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 26 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 27 C -0.12 -1.77 9.68 22.27 0.22 -1.56 16 28 C 0.12 2.97 6.50 86.73 0.56 3.54 16 29 H 0.04 1.76 6.66 -2.39 -0.02 1.74 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 3.39 6.07 -2.39 -0.01 3.38 16 32 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 2.22 7.79 -2.39 -0.02 2.20 16 35 H 0.08 2.69 6.43 -2.39 -0.02 2.68 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.07 1.57 6.74 -2.39 -0.02 1.55 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.12 2.44 7.27 -2.91 -0.02 2.42 16 41 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 44 H 0.14 1.48 7.98 -2.91 -0.02 1.46 16 45 H 0.07 1.58 7.13 -2.39 -0.02 1.56 16 46 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -70.01 379.14 0.08 -69.93 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.96 Total: 15.60 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 4.96 Total: -20.89 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -3.28 Total: -128.04 kcal Atomic # 8 Polarization: -92.71 SS G_CDS: -4.23 Total: -96.94 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 115.02 SS G_CDS: -0.36 Total: 114.66 kcal Total: -70.01 0.08 -69.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282988288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.070 kcal (2) G-P(sol) polarization free energy of solvation -70.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds