Wall clock time and date at job start Tue Mar 31 2020 20:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47547 * 2 1 4 4 C 1.50700 * 109.47144 * 240.00186 * 2 1 3 5 5 H 1.08006 * 120.00155 * 245.61263 * 4 2 1 6 6 C 1.37875 * 120.00121 * 65.60773 * 4 2 1 7 7 N 1.31514 * 120.00467 * 194.31962 * 6 4 2 8 8 Si 1.86806 * 120.00070 * 14.32571 * 6 4 2 9 9 H 1.48491 * 109.47205 * 95.04781 * 8 6 4 10 10 H 1.48501 * 109.47021 * 215.05255 * 8 6 4 11 11 H 1.48504 * 109.46552 * 335.04733 * 8 6 4 12 12 N 1.46495 * 109.47461 * 120.00150 * 2 1 3 13 13 C 1.46501 * 119.99845 * 55.77295 * 12 2 1 14 14 S 1.65601 * 120.00336 * 235.77418 * 12 2 1 15 15 O 1.42100 * 106.40131 * 342.72960 * 14 12 2 16 16 O 1.42100 * 106.40306 * 209.80554 * 14 12 2 17 17 N 1.65609 * 107.21555 * 96.26774 * 14 12 2 18 18 C 1.46498 * 119.99900 * 294.04050 * 17 14 12 19 19 H 1.08994 * 109.47360 * 358.49670 * 18 17 14 20 20 C 1.50704 * 109.46969 * 118.49604 * 18 17 14 21 21 C 1.38221 * 120.00192 * 219.99957 * 20 18 17 22 22 C 1.38240 * 120.00428 * 180.02562 * 21 20 18 23 23 C 1.38238 * 119.99406 * 359.94851 * 22 21 20 24 24 C 1.38223 * 120.00124 * 0.28431 * 23 22 21 25 25 C 1.38233 * 120.00319 * 359.50696 * 24 23 22 26 26 C 1.52999 * 109.46998 * 238.49516 * 18 17 14 27 27 C 1.52992 * 117.50070 * 127.88854 * 26 18 17 28 28 C 1.52992 * 117.49989 * 59.26301 * 26 18 17 29 29 H 1.08999 * 109.46675 * 304.15767 * 1 2 3 30 30 H 1.09001 * 109.47036 * 64.15665 * 1 2 3 31 31 H 1.08993 * 109.47373 * 184.15451 * 1 2 3 32 32 H 0.96997 * 120.00184 * 180.02562 * 7 6 4 33 33 H 1.09008 * 109.47087 * 274.08468 * 13 12 2 34 34 H 1.09005 * 109.47482 * 34.08142 * 13 12 2 35 35 H 1.09003 * 109.47510 * 154.08648 * 13 12 2 36 36 H 0.97001 * 119.99415 * 114.04145 * 17 14 12 37 37 H 1.08004 * 119.99939 * 359.97305 * 21 20 18 38 38 H 1.08004 * 120.00016 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.99373 * 180.02562 * 23 22 21 40 40 H 1.08003 * 120.00306 * 179.72477 * 24 23 22 41 41 H 1.07999 * 120.00353 * 180.25697 * 25 24 23 42 42 H 1.08999 * 115.55071 * 273.59685 * 26 18 17 43 43 H 1.09008 * 117.49644 * 359.97438 * 27 26 18 44 44 H 1.08999 * 117.50204 * 145.01560 * 27 26 18 45 45 H 1.08997 * 117.50403 * 214.97810 * 28 26 18 46 46 H 1.09005 * 117.50074 * 359.97438 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5764 -1.6383 -1.1340 6 6 1.7972 -0.1757 -2.4794 7 7 1.9766 -0.9119 -3.5543 8 14 1.2240 1.5945 -2.6449 9 1 2.3967 2.4746 -2.8799 10 1 0.2843 1.7056 -3.7894 11 1 0.5351 2.0103 -1.3967 12 7 2.0184 -0.6906 1.1961 13 6 1.5898 -2.0633 1.4756 14 16 3.0549 0.0804 2.2322 15 8 3.5909 1.1844 1.5158 16 8 3.8621 -0.9313 2.8188 17 7 2.1400 0.7173 3.4569 18 6 1.1825 1.7895 3.1745 19 1 1.2318 2.0516 2.1177 20 6 -0.2097 1.3212 3.5115 21 6 -1.2691 1.6543 2.6885 22 6 -2.5463 1.2253 2.9978 23 6 -2.7638 0.4621 4.1298 24 6 -1.7051 0.1330 4.9553 25 6 -0.4273 0.5584 4.6437 26 6 1.5267 3.0166 4.0209 27 6 1.6771 4.3554 3.2958 28 6 2.9138 3.6352 3.8370 29 1 -0.3632 0.5770 0.8504 30 1 -0.3633 0.4480 -0.9249 31 1 -0.3634 -1.0249 0.0744 32 1 1.8115 -0.5357 -4.4330 33 1 0.6438 -2.0455 2.0170 34 1 1.4609 -2.6021 0.5368 35 1 2.3455 -2.5638 2.0811 36 1 2.2383 0.3804 4.3612 37 1 -1.0992 2.2506 1.8042 38 1 -3.3741 1.4860 2.3550 39 1 -3.7615 0.1265 4.3712 40 1 -1.8756 -0.4596 5.8420 41 1 0.4005 0.2977 5.2865 42 1 1.0977 3.0320 5.0228 43 1 1.5313 4.3618 2.2155 44 1 1.3469 5.2519 3.8205 45 1 3.3972 4.0580 4.7176 46 1 3.5815 3.1677 3.1132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283077064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:49 Heat of formation + Delta-G solvation = -18.034139 kcal Electronic energy + Delta-G solvation = -29406.901743 eV Core-core repulsion = 25617.388721 eV Total energy + Delta-G solvation = -3789.513023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.73998 -37.63737 -36.74008 -36.33486 -35.31903 -34.29152 -32.48643 -31.14164 -30.71526 -29.89503 -26.24064 -25.72285 -25.02147 -22.76286 -22.29082 -21.88815 -20.78244 -20.46004 -18.91960 -17.52758 -17.26699 -16.97565 -16.42755 -16.17533 -15.74627 -15.09758 -14.90594 -14.61309 -14.46859 -13.89964 -13.64450 -13.47251 -13.19324 -12.93784 -12.86284 -12.63036 -12.36330 -12.16189 -12.02001 -11.89105 -11.65993 -11.50560 -11.44603 -11.37923 -11.31283 -11.06949 -11.03375 -10.89117 -10.54843 -10.42128 -10.25477 -10.20731 -9.70071 -9.50506 -9.45993 -8.89628 -8.74350 -8.51834 -8.05949 -6.15252 -4.11150 1.05432 1.33190 1.38967 3.24017 3.30527 3.34111 3.38063 3.74934 3.80494 4.08450 4.36812 4.45765 4.75492 4.84324 4.85864 4.97379 4.98004 5.05762 5.10672 5.15109 5.18697 5.38531 5.47479 5.49429 5.62521 5.66776 5.83322 5.89488 5.94843 6.03429 6.08946 6.11651 6.18757 6.25151 6.37355 6.41372 6.43589 6.48905 6.59030 6.62039 6.66333 6.91664 6.96638 7.10332 7.31457 7.44223 7.68223 8.46364 8.92234 9.48201 10.97630 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010285 B = 0.005645 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.847100 B = 4958.862193 C = 5476.502133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.244 3.756 3 H 0.050 0.950 4 C -0.528 4.528 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.888 5.888 8 Si 0.860 3.140 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.254 1.254 12 N -0.981 5.981 13 C 0.097 3.903 14 S 2.777 3.223 15 O -0.973 6.973 16 O -0.991 6.991 17 N -1.123 6.123 18 C 0.226 3.774 19 H 0.099 0.901 20 C -0.084 4.084 21 C -0.101 4.101 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.104 4.104 26 C -0.161 4.161 27 C -0.172 4.172 28 C -0.175 4.175 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.265 0.735 33 H 0.040 0.960 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.410 0.590 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 6.337 17.833 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.139 3.861 3 H 0.068 0.932 4 C -0.567 4.567 5 H 0.098 0.902 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.687 3.313 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.179 1.179 12 N -0.823 5.823 13 C -0.049 4.049 14 S 2.786 3.214 15 O -0.956 6.956 16 O -0.975 6.975 17 N -0.879 5.879 18 C 0.119 3.881 19 H 0.117 0.883 20 C -0.086 4.086 21 C -0.120 4.120 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.122 4.122 26 C -0.181 4.181 27 C -0.210 4.210 28 C -0.212 4.212 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.243 0.757 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.126 0.874 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.250 6.446 17.341 19.871 hybrid contribution -0.762 0.623 0.102 0.989 sum -8.012 7.069 17.443 20.455 Atomic orbital electron populations 1.22554 0.98390 1.01073 0.99673 1.18989 0.91034 0.92981 0.83104 0.93219 1.21134 1.37027 1.10013 0.88483 0.90180 1.24850 0.94637 0.97303 0.95637 1.69947 1.48716 1.35650 0.98216 0.87242 0.79165 0.86587 0.78352 1.20218 1.21149 1.17858 1.57358 1.66256 1.22740 1.35935 1.21327 0.98341 0.82719 1.02533 1.02024 0.73569 0.73272 0.72513 1.93588 1.76427 1.53630 1.71975 1.93555 1.66431 1.59042 1.78453 1.56335 1.57184 1.49473 1.24877 1.19084 0.84611 0.85062 0.99367 0.88317 1.20033 0.94772 0.98292 0.95486 1.21040 0.92407 0.99671 0.98886 1.21108 0.96871 0.98293 0.97220 1.21113 0.98862 0.98749 0.95230 1.21075 0.92852 1.00395 0.99737 1.20853 0.96805 0.97892 0.96697 1.22543 1.01680 0.93286 1.00567 1.23002 1.02512 0.94685 1.00777 1.23047 0.91012 1.03525 1.03620 0.94808 0.92718 0.92851 0.92536 0.94165 0.89696 0.91761 0.75739 0.85782 0.86090 0.86407 0.86340 0.86362 0.87432 0.88345 0.88711 0.88850 0.87432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 8.49 37.16 0.32 -2.83 16 2 C 0.24 5.50 2.16 -69.09 -0.15 5.35 16 3 H 0.05 1.18 5.40 -51.93 -0.28 0.90 16 4 C -0.53 -14.37 8.59 -34.44 -0.30 -14.66 16 5 H 0.08 2.38 7.61 -52.48 -0.40 1.98 16 6 C 0.08 2.22 5.35 -17.82 -0.10 2.12 16 7 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 8 Si 0.86 20.70 25.78 -169.99 -4.38 16.31 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.25 -5.53 5.47 56.52 0.31 -5.22 16 12 N -0.98 -19.43 3.12 -115.85 -0.36 -19.80 16 13 C 0.10 1.70 9.49 59.85 0.57 2.27 16 14 S 2.78 51.86 6.03 -107.50 -0.65 51.21 16 15 O -0.97 -21.04 15.36 -57.17 -0.88 -21.91 16 16 O -0.99 -20.21 16.84 -57.17 -0.96 -21.17 16 17 N -1.12 -15.32 4.97 -5.88 -0.03 -15.35 16 18 C 0.23 2.97 2.72 -69.08 -0.19 2.78 16 19 H 0.10 1.49 7.23 -51.93 -0.38 1.12 16 20 C -0.08 -1.02 4.86 -104.62 -0.51 -1.53 16 21 C -0.10 -1.24 7.54 -39.59 -0.30 -1.54 16 22 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 23 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 24 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 25 C -0.10 -1.12 9.32 -39.58 -0.37 -1.49 16 26 C -0.16 -1.81 5.35 -90.63 -0.48 -2.30 16 27 C -0.17 -1.90 10.18 -26.74 -0.27 -2.17 16 28 C -0.17 -2.08 10.11 -26.74 -0.27 -2.35 16 29 H 0.03 0.57 5.14 -51.93 -0.27 0.30 16 30 H 0.05 1.14 5.02 -51.93 -0.26 0.88 16 31 H 0.05 1.04 7.43 -51.93 -0.39 0.66 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.08 1.61 7.19 -51.93 -0.37 1.24 16 35 H 0.06 1.06 7.02 -51.93 -0.36 0.70 16 36 H 0.41 4.51 7.84 -34.47 -0.27 4.24 16 37 H 0.12 1.51 7.59 -52.48 -0.40 1.11 16 38 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.12 1.09 6.98 -52.49 -0.37 0.72 16 42 H 0.11 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.10 1.17 8.05 -51.92 -0.42 0.75 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.11 1.55 7.41 -51.93 -0.38 1.17 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -32.89 374.95 -10.81 -43.70 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.73 Total: 8.30 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -3.24 Total: -21.27 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.38 Total: -60.82 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -1.84 Total: -43.09 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.38 Total: 16.31 kcal Atomic # 16 Polarization: 51.86 SS G_CDS: -0.65 Total: 51.21 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.89 -10.81 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283077064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.667 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds