Wall clock time and date at job start Tue Mar 31 2020 20:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47107 * 2 1 4 4 C 1.50695 * 109.47062 * 239.99847 * 2 1 3 5 5 H 1.07998 * 120.00711 * 245.57449 * 4 2 1 6 6 C 1.37885 * 119.99983 * 65.56861 * 4 2 1 7 7 N 1.31510 * 120.00278 * 197.48972 * 6 4 2 8 8 Si 1.86801 * 119.99497 * 17.77196 * 6 4 2 9 9 H 1.48507 * 109.46895 * 179.72314 * 8 6 4 10 10 H 1.48498 * 109.47104 * 299.71868 * 8 6 4 11 11 H 1.48494 * 109.47500 * 59.72167 * 8 6 4 12 12 N 1.46497 * 109.47029 * 120.00000 * 2 1 3 13 13 C 1.46504 * 120.00059 * 59.99856 * 12 2 1 14 14 S 1.65603 * 120.00183 * 239.99873 * 12 2 1 15 15 O 1.42092 * 106.40419 * 203.54300 * 14 12 2 16 16 O 1.42104 * 106.39974 * 336.46300 * 14 12 2 17 17 N 1.65599 * 107.21859 * 89.99997 * 14 12 2 18 18 C 1.46500 * 119.99902 * 64.30230 * 17 14 12 19 19 H 1.08992 * 109.47236 * 3.48823 * 18 17 14 20 20 C 1.50698 * 109.47064 * 243.48541 * 18 17 14 21 21 C 1.38237 * 120.00351 * 319.72881 * 20 18 17 22 22 C 1.38235 * 119.99828 * 179.76468 * 21 20 18 23 23 C 1.38236 * 120.00304 * 0.48808 * 22 21 20 24 24 C 1.38234 * 119.99611 * 359.78805 * 23 22 21 25 25 C 1.38233 * 120.00226 * 359.95721 * 24 23 22 26 26 C 1.53001 * 109.46743 * 123.48873 * 18 17 14 27 27 C 1.52995 * 117.50123 * 3.21014 * 26 18 17 28 28 C 1.52998 * 117.49920 * 294.58485 * 26 18 17 29 29 H 1.08997 * 109.46891 * 174.73567 * 1 2 3 30 30 H 1.09005 * 109.46673 * 294.73484 * 1 2 3 31 31 H 1.08999 * 109.47177 * 54.73524 * 1 2 3 32 32 H 0.97004 * 119.99688 * 355.22410 * 7 6 4 33 33 H 1.09000 * 109.46980 * 89.99863 * 13 12 2 34 34 H 1.08999 * 109.47427 * 209.99681 * 13 12 2 35 35 H 1.09001 * 109.46955 * 330.00334 * 13 12 2 36 36 H 0.96998 * 120.00061 * 244.30449 * 17 14 12 37 37 H 1.07992 * 119.99618 * 359.97438 * 21 20 18 38 38 H 1.07995 * 119.99983 * 180.24975 * 22 21 20 39 39 H 1.07998 * 120.00080 * 179.76818 * 23 22 21 40 40 H 1.08009 * 119.99947 * 179.97438 * 24 23 22 41 41 H 1.08009 * 120.00075 * 180.02562 * 25 24 23 42 42 H 1.09005 * 115.54786 * 148.91574 * 26 18 17 43 43 H 1.08998 * 117.49747 * 359.97438 * 27 26 18 44 44 H 1.09001 * 117.50417 * 145.02350 * 27 26 18 45 45 H 1.09001 * 117.50175 * 214.98334 * 28 26 18 46 46 H 1.08997 * 117.49764 * 0.02562 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5770 -1.6380 -1.1340 6 6 1.7965 -0.1762 -2.4795 7 7 1.9156 -0.9302 -3.5504 8 14 1.3155 1.6206 -2.6511 9 1 1.1262 1.9474 -4.0874 10 1 0.0486 1.8663 -1.9165 11 1 2.3893 2.4767 -2.0861 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 16 2.9705 0.1141 2.2863 15 8 3.7119 -0.8789 2.9814 16 8 3.5795 1.1830 1.5748 17 7 1.9608 0.8090 3.3998 18 6 1.1396 -0.0351 4.2712 19 1 1.3721 -1.0836 4.0855 20 6 -0.3184 0.2147 3.9837 21 6 -0.7659 1.5012 3.7477 22 6 -2.1026 1.7296 3.4792 23 6 -2.9935 0.6729 3.4566 24 6 -2.5470 -0.6128 3.6982 25 6 -1.2095 -0.8419 3.9615 26 6 1.4360 0.3018 5.7340 27 6 2.4162 1.4432 6.0115 28 6 2.8395 -0.0060 6.2594 29 1 -0.3633 -1.0233 -0.0943 30 1 -0.3633 0.4300 0.9335 31 1 -0.3633 0.5933 -0.8391 32 1 2.2360 -1.8421 -3.4682 33 1 2.4157 -2.7377 0.9717 34 1 1.6238 -2.2853 2.5002 35 1 0.6904 -2.3002 0.9846 36 1 1.9131 1.7749 3.4751 37 1 -0.0707 2.3273 3.7699 38 1 -2.4515 2.7342 3.2909 39 1 -4.0384 0.8519 3.2504 40 1 -3.2431 -1.4384 3.6809 41 1 -0.8605 -1.8466 4.1499 42 1 0.6014 0.1756 6.4238 43 1 2.8502 1.9540 5.1520 44 1 2.2267 2.0685 6.8841 45 1 2.9286 -0.3342 7.2950 46 1 3.5519 -0.4480 5.5629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283077066.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:52 Heat of formation + Delta-G solvation = -17.143655 kcal Electronic energy + Delta-G solvation = -29307.559593 eV Core-core repulsion = 25518.085184 eV Total energy + Delta-G solvation = -3789.474408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.80658 -37.81517 -36.76185 -36.34656 -35.36009 -34.02927 -32.54584 -31.15879 -30.73129 -29.81759 -26.46436 -25.76362 -24.59514 -22.81689 -22.33766 -21.91685 -20.68192 -20.35581 -18.86223 -17.58283 -17.53038 -17.13128 -16.90338 -15.95470 -15.85345 -15.17439 -15.01655 -14.68207 -14.13514 -13.85233 -13.50557 -13.43822 -13.27381 -13.17184 -12.98520 -12.72958 -12.18589 -12.11435 -12.08095 -11.76557 -11.66637 -11.57576 -11.54136 -11.50764 -11.31032 -11.23499 -11.07836 -10.83096 -10.51395 -10.42575 -10.17913 -9.93364 -9.75502 -9.52870 -9.12954 -8.92565 -8.76020 -8.38315 -8.05161 -6.46786 -4.09412 1.03178 1.32433 1.39481 3.28626 3.34652 3.47819 3.59977 3.66801 3.78653 3.99907 4.44145 4.46607 4.70027 4.75597 4.79518 4.91502 4.96833 5.02266 5.09609 5.11736 5.22818 5.31732 5.43979 5.47213 5.53634 5.59166 5.74511 5.83212 5.94053 5.99505 6.02899 6.06063 6.16313 6.22244 6.38147 6.42741 6.45312 6.49020 6.55264 6.59374 6.62488 6.93855 6.96418 7.05047 7.34922 7.50680 7.99145 8.37219 8.89894 9.58618 10.91700 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011477 B = 0.005508 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.035588 B = 5082.299347 C = 6340.876472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.248 3.752 3 H 0.045 0.955 4 C -0.604 4.604 5 H 0.064 0.936 6 C 0.036 3.964 7 N -0.902 5.902 8 Si 1.033 2.967 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.276 1.276 12 N -0.980 5.980 13 C 0.112 3.888 14 S 2.774 3.226 15 O -0.989 6.989 16 O -0.974 6.974 17 N -1.125 6.125 18 C 0.228 3.772 19 H 0.099 0.901 20 C -0.087 4.087 21 C -0.098 4.098 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.109 4.109 26 C -0.159 4.159 27 C -0.174 4.174 28 C -0.177 4.177 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.268 0.732 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.412 0.588 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.199 3.036 19.857 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.144 3.856 3 H 0.063 0.937 4 C -0.643 4.643 5 H 0.082 0.918 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.861 3.139 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.202 1.202 12 N -0.822 5.822 13 C -0.034 4.034 14 S 2.783 3.217 15 O -0.972 6.972 16 O -0.958 6.958 17 N -0.883 5.883 18 C 0.120 3.880 19 H 0.117 0.883 20 C -0.089 4.089 21 C -0.116 4.116 22 C -0.137 4.137 23 C -0.138 4.138 24 C -0.135 4.135 25 C -0.127 4.127 26 C -0.179 4.179 27 C -0.212 4.212 28 C -0.214 4.214 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.246 0.754 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.130 0.870 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.638 4.028 18.715 20.611 hybrid contribution -0.062 -0.839 1.035 1.334 sum -7.700 3.189 19.749 21.436 Atomic orbital electron populations 1.22521 0.98531 1.01379 0.99526 1.18948 0.90857 0.92860 0.82950 0.93721 1.22164 1.40793 1.10602 0.90761 0.91833 1.25655 0.94611 1.04846 0.91953 1.70861 1.41587 1.09778 1.31356 0.84252 0.77423 0.75849 0.76404 1.20866 1.19807 1.20215 1.57424 1.69915 1.19781 1.35094 1.21165 1.01855 0.81903 0.98483 1.02132 0.73726 0.73330 0.72474 1.93551 1.68813 1.60527 1.74348 1.93614 1.74319 1.56058 1.71847 1.56499 1.61338 1.17432 1.53011 1.19034 0.86450 0.94442 0.88048 0.88314 1.20036 0.94894 0.93871 1.00090 1.20861 0.95497 0.96351 0.98904 1.21114 0.93482 0.99064 1.00053 1.21127 0.99559 0.93005 1.00130 1.21076 0.95624 0.96924 0.99904 1.20982 0.93310 0.98438 1.00003 1.22603 0.94117 1.05201 0.95977 1.22945 1.03432 0.91675 1.03135 1.23085 0.97497 0.98601 1.02229 0.93047 0.95204 0.92084 0.92178 0.93137 0.93425 0.90927 0.75366 0.86350 0.86251 0.86379 0.86182 0.86048 0.87002 0.88514 0.88925 0.88809 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 8.73 37.16 0.32 -3.00 16 2 C 0.25 5.77 2.21 -69.08 -0.15 5.62 16 3 H 0.05 1.10 5.56 -51.93 -0.29 0.81 16 4 C -0.60 -16.65 8.67 -34.44 -0.30 -16.95 16 5 H 0.06 1.88 7.75 -52.49 -0.41 1.48 16 6 C 0.04 1.01 5.34 -17.82 -0.10 0.92 16 7 N -0.90 -27.31 13.70 55.43 0.76 -26.55 16 8 Si 1.03 25.03 26.44 -169.99 -4.49 20.54 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.27 -5.91 5.49 56.52 0.31 -5.59 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.98 -19.63 3.12 -115.85 -0.36 -19.99 16 13 C 0.11 1.97 9.48 59.85 0.57 2.53 16 14 S 2.77 51.94 5.97 -107.50 -0.64 51.30 16 15 O -0.99 -19.48 16.36 -57.17 -0.94 -20.41 16 16 O -0.97 -21.89 16.70 -57.17 -0.95 -22.85 16 17 N -1.13 -15.32 3.99 -5.88 -0.02 -15.35 16 18 C 0.23 2.69 2.87 -69.08 -0.20 2.49 16 19 H 0.10 1.20 6.01 -51.93 -0.31 0.89 16 20 C -0.09 -1.00 4.91 -104.62 -0.51 -1.52 16 21 C -0.10 -1.11 9.32 -39.58 -0.37 -1.48 16 22 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 23 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 25 C -0.11 -1.18 9.67 -39.58 -0.38 -1.57 16 26 C -0.16 -1.61 5.72 -90.62 -0.52 -2.12 16 27 C -0.17 -1.71 9.76 -26.73 -0.26 -1.97 16 28 C -0.18 -1.88 10.23 -26.73 -0.27 -2.15 16 29 H 0.05 1.05 6.89 -51.93 -0.36 0.70 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.32 4.80 -51.93 -0.25 1.07 16 32 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 33 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 34 H 0.05 0.68 6.30 -51.93 -0.33 0.35 16 35 H 0.07 1.24 6.54 -51.93 -0.34 0.90 16 36 H 0.41 4.85 6.74 -34.47 -0.23 4.62 16 37 H 0.12 1.21 7.04 -52.49 -0.37 0.84 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 41 H 0.12 1.13 8.04 -52.48 -0.42 0.71 16 42 H 0.11 1.01 8.07 -51.93 -0.42 0.59 16 43 H 0.10 1.00 6.34 -51.93 -0.33 0.67 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.11 1.37 7.73 -51.93 -0.40 0.97 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -33.55 376.22 -11.00 -44.55 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.65 Total: 7.20 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -3.36 Total: -24.11 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.37 Total: -61.89 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -1.89 Total: -43.26 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -4.49 Total: 20.54 kcal Atomic # 16 Polarization: 51.94 SS G_CDS: -0.64 Total: 51.30 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.55 -11.00 -44.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283077066.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.405 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds