Wall clock time and date at job start Tue Mar 31 2020 20:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47107 * 2 1 4 4 C 1.50695 * 109.47062 * 239.99847 * 2 1 3 5 5 H 1.07998 * 120.00711 * 245.57449 * 4 2 1 6 6 C 1.37885 * 119.99983 * 65.56861 * 4 2 1 7 7 N 1.31510 * 120.00278 * 197.48972 * 6 4 2 8 8 Si 1.86801 * 119.99497 * 17.77196 * 6 4 2 9 9 H 1.48507 * 109.46895 * 179.72314 * 8 6 4 10 10 H 1.48498 * 109.47104 * 299.71868 * 8 6 4 11 11 H 1.48494 * 109.47500 * 59.72167 * 8 6 4 12 12 N 1.46497 * 109.47029 * 120.00000 * 2 1 3 13 13 C 1.46504 * 120.00059 * 59.99856 * 12 2 1 14 14 S 1.65603 * 120.00183 * 239.99873 * 12 2 1 15 15 O 1.42092 * 106.40419 * 203.54300 * 14 12 2 16 16 O 1.42104 * 106.39974 * 336.46300 * 14 12 2 17 17 N 1.65599 * 107.21859 * 89.99997 * 14 12 2 18 18 C 1.46500 * 119.99902 * 64.30230 * 17 14 12 19 19 H 1.08992 * 109.47236 * 3.48823 * 18 17 14 20 20 C 1.50698 * 109.47064 * 243.48541 * 18 17 14 21 21 C 1.38237 * 120.00351 * 319.72881 * 20 18 17 22 22 C 1.38235 * 119.99828 * 179.76468 * 21 20 18 23 23 C 1.38236 * 120.00304 * 0.48808 * 22 21 20 24 24 C 1.38234 * 119.99611 * 359.78805 * 23 22 21 25 25 C 1.38233 * 120.00226 * 359.95721 * 24 23 22 26 26 C 1.53001 * 109.46743 * 123.48873 * 18 17 14 27 27 C 1.52995 * 117.50123 * 3.21014 * 26 18 17 28 28 C 1.52998 * 117.49920 * 294.58485 * 26 18 17 29 29 H 1.08997 * 109.46891 * 174.73567 * 1 2 3 30 30 H 1.09005 * 109.46673 * 294.73484 * 1 2 3 31 31 H 1.08999 * 109.47177 * 54.73524 * 1 2 3 32 32 H 0.97004 * 119.99688 * 355.22410 * 7 6 4 33 33 H 1.09000 * 109.46980 * 89.99863 * 13 12 2 34 34 H 1.08999 * 109.47427 * 209.99681 * 13 12 2 35 35 H 1.09001 * 109.46955 * 330.00334 * 13 12 2 36 36 H 0.96998 * 120.00061 * 244.30449 * 17 14 12 37 37 H 1.07992 * 119.99618 * 359.97438 * 21 20 18 38 38 H 1.07995 * 119.99983 * 180.24975 * 22 21 20 39 39 H 1.07998 * 120.00080 * 179.76818 * 23 22 21 40 40 H 1.08009 * 119.99947 * 179.97438 * 24 23 22 41 41 H 1.08009 * 120.00075 * 180.02562 * 25 24 23 42 42 H 1.09005 * 115.54786 * 148.91574 * 26 18 17 43 43 H 1.08998 * 117.49747 * 359.97438 * 27 26 18 44 44 H 1.09001 * 117.50417 * 145.02350 * 27 26 18 45 45 H 1.09001 * 117.50175 * 214.98334 * 28 26 18 46 46 H 1.08997 * 117.49764 * 0.02562 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5770 -1.6380 -1.1340 6 6 1.7965 -0.1762 -2.4795 7 7 1.9156 -0.9302 -3.5504 8 14 1.3155 1.6206 -2.6511 9 1 1.1262 1.9474 -4.0874 10 1 0.0486 1.8663 -1.9165 11 1 2.3893 2.4767 -2.0861 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 16 2.9705 0.1141 2.2863 15 8 3.7119 -0.8789 2.9814 16 8 3.5795 1.1830 1.5748 17 7 1.9608 0.8090 3.3998 18 6 1.1396 -0.0351 4.2712 19 1 1.3721 -1.0836 4.0855 20 6 -0.3184 0.2147 3.9837 21 6 -0.7659 1.5012 3.7477 22 6 -2.1026 1.7296 3.4792 23 6 -2.9935 0.6729 3.4566 24 6 -2.5470 -0.6128 3.6982 25 6 -1.2095 -0.8419 3.9615 26 6 1.4360 0.3018 5.7340 27 6 2.4162 1.4432 6.0115 28 6 2.8395 -0.0060 6.2594 29 1 -0.3633 -1.0233 -0.0943 30 1 -0.3633 0.4300 0.9335 31 1 -0.3633 0.5933 -0.8391 32 1 2.2360 -1.8421 -3.4682 33 1 2.4157 -2.7377 0.9717 34 1 1.6238 -2.2853 2.5002 35 1 0.6904 -2.3002 0.9846 36 1 1.9131 1.7749 3.4751 37 1 -0.0707 2.3273 3.7699 38 1 -2.4515 2.7342 3.2909 39 1 -4.0384 0.8519 3.2504 40 1 -3.2431 -1.4384 3.6809 41 1 -0.8605 -1.8466 4.1499 42 1 0.6014 0.1756 6.4238 43 1 2.8502 1.9540 5.1520 44 1 2.2267 2.0685 6.8841 45 1 2.9286 -0.3342 7.2950 46 1 3.5519 -0.4480 5.5629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283077066.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:51 Heat of formation + Delta-G solvation = -39.357255 kcal Electronic energy + Delta-G solvation = -29308.522846 eV Core-core repulsion = 25518.085184 eV Total energy + Delta-G solvation = -3790.437662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.64318 -38.70275 -38.31830 -38.05071 -36.97504 -35.01215 -34.60729 -32.02235 -31.60560 -31.53903 -27.40910 -27.27126 -26.59557 -23.62789 -23.10777 -22.70010 -22.46605 -21.27675 -20.29709 -19.60004 -18.91847 -18.47949 -18.07912 -17.11079 -16.84242 -16.48494 -15.89732 -15.82782 -15.46762 -15.41193 -15.05710 -14.71512 -14.53724 -14.21737 -14.05740 -13.95643 -13.69947 -13.55385 -13.47327 -13.39429 -13.31294 -13.21655 -12.94112 -12.54046 -12.47770 -12.35866 -12.25845 -12.11895 -11.81748 -11.80375 -11.57174 -11.30378 -11.13535 -11.04216 -10.59938 -10.43236 -9.87082 -9.69841 -9.54380 -8.70542 -6.35236 -0.45163 0.51800 0.62201 1.41724 1.54675 1.68974 1.91992 2.45995 2.53163 2.86426 2.98720 3.07493 3.32799 3.59992 3.80208 3.92942 3.95663 4.15895 4.19543 4.22320 4.28180 4.38675 4.46912 4.48836 4.58645 4.63222 4.73760 4.75527 4.82019 4.84257 4.89049 4.97929 5.04924 5.06480 5.17472 5.25862 5.28461 5.31156 5.32235 5.58161 5.66942 5.72765 5.74129 5.78365 5.99125 6.04338 6.07677 6.20907 6.61973 7.41061 8.64878 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011477 B = 0.005508 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.035588 B = 5082.299347 C = 6340.876472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.250 3.750 3 H 0.038 0.962 4 C -0.605 4.605 5 H 0.027 0.973 6 C -0.014 4.014 7 N -0.934 5.934 8 Si 1.062 2.938 9 H -0.285 1.285 10 H -0.226 1.226 11 H -0.275 1.275 12 N -0.989 5.989 13 C 0.108 3.892 14 S 2.791 3.209 15 O -1.002 7.002 16 O -1.015 7.015 17 N -1.106 6.106 18 C 0.224 3.776 19 H 0.095 0.905 20 C -0.096 4.096 21 C -0.111 4.111 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.151 4.151 27 C -0.172 4.172 28 C -0.187 4.187 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.253 0.747 33 H 0.029 0.971 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.423 0.577 37 H 0.125 0.875 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.504 4.416 22.284 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.145 3.855 3 H 0.056 0.944 4 C -0.644 4.644 5 H 0.045 0.955 6 C -0.213 4.213 7 N -0.570 5.570 8 Si 0.883 3.117 9 H -0.211 1.211 10 H -0.150 1.150 11 H -0.200 1.200 12 N -0.830 5.830 13 C -0.037 4.037 14 S 2.800 3.200 15 O -0.985 6.985 16 O -0.999 6.999 17 N -0.869 5.869 18 C 0.118 3.882 19 H 0.112 0.888 20 C -0.098 4.098 21 C -0.129 4.129 22 C -0.146 4.146 23 C -0.144 4.144 24 C -0.142 4.142 25 C -0.137 4.137 26 C -0.171 4.171 27 C -0.209 4.209 28 C -0.224 4.224 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.260 0.740 37 H 0.143 0.857 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.107 0.893 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.949 5.386 21.166 24.000 hybrid contribution 0.702 -1.357 0.397 1.578 sum -9.248 4.030 21.563 23.806 Atomic orbital electron populations 1.22320 0.95988 1.01550 1.00821 1.18728 0.92563 0.91959 0.82294 0.94430 1.22396 1.39631 1.09333 0.93036 0.95477 1.26958 0.94511 1.07994 0.91858 1.70984 1.44169 1.09379 1.32460 0.83924 0.79409 0.71370 0.76960 1.21050 1.14973 1.20023 1.57359 1.69965 1.20831 1.34850 1.21298 1.01339 0.80417 1.00668 1.01413 0.73646 0.72533 0.72409 1.93535 1.69511 1.61116 1.74376 1.93553 1.75757 1.57297 1.73265 1.55997 1.60982 1.18195 1.51730 1.19210 0.86603 0.93805 0.88620 0.88758 1.19989 0.94361 0.94348 1.01119 1.21040 0.96123 0.96492 0.99252 1.21372 0.93345 1.00057 0.99840 1.21434 1.00542 0.92938 0.99492 1.21355 0.95767 0.97657 0.99403 1.21205 0.93632 0.98905 0.99948 1.22578 0.94364 1.05204 0.94945 1.23039 1.02736 0.91493 1.03651 1.23082 0.97302 0.99360 1.02687 0.93169 0.92182 0.92634 0.93818 0.95213 0.89922 0.90375 0.73951 0.85712 0.84784 0.84629 0.84494 0.84907 0.85221 0.89322 0.86838 0.86966 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.77 8.73 71.98 0.63 -5.14 16 2 C 0.25 11.44 2.21 44.25 0.10 11.53 16 3 H 0.04 1.80 5.56 -2.39 -0.01 1.79 16 4 C -0.60 -33.99 8.67 25.60 0.22 -33.77 16 5 H 0.03 1.68 7.75 -2.91 -0.02 1.65 16 6 C -0.01 -0.80 5.34 84.66 0.45 -0.35 16 7 N -0.93 -58.22 13.70 21.45 0.29 -57.92 16 8 Si 1.06 49.60 26.44 68.60 1.81 51.41 16 9 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.23 -8.88 5.49 99.48 0.55 -8.33 16 11 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 12 N -0.99 -39.05 3.12 -520.44 -1.62 -40.67 16 13 C 0.11 3.74 9.48 127.77 1.21 4.95 16 14 S 2.79 102.91 5.97 -56.49 -0.34 102.57 16 15 O -1.00 -39.22 16.36 -128.00 -2.09 -41.31 16 16 O -1.01 -45.57 16.70 -128.00 -2.14 -47.70 16 17 N -1.11 -28.20 3.99 -172.53 -0.69 -28.89 16 18 C 0.22 4.77 2.87 44.24 0.13 4.90 16 19 H 0.09 2.09 6.01 -2.39 -0.01 2.08 16 20 C -0.10 -1.94 4.91 -19.87 -0.10 -2.04 16 21 C -0.11 -2.17 9.32 22.27 0.21 -1.96 16 22 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 23 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 24 C -0.12 -2.16 10.05 22.27 0.22 -1.93 16 25 C -0.12 -2.22 9.67 22.27 0.22 -2.00 16 26 C -0.15 -2.64 5.72 -10.80 -0.06 -2.70 16 27 C -0.17 -2.94 9.76 30.59 0.30 -2.64 16 28 C -0.19 -3.61 10.23 30.59 0.31 -3.30 16 29 H 0.05 1.95 6.89 -2.39 -0.02 1.94 16 30 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.05 2.22 4.80 -2.39 -0.01 2.21 16 32 H 0.25 15.99 8.73 -92.71 -0.81 15.18 16 33 H 0.03 1.12 8.09 -2.39 -0.02 1.10 16 34 H 0.08 2.23 6.30 -2.39 -0.02 2.22 16 35 H 0.08 2.59 6.54 -2.39 -0.02 2.57 16 36 H 0.42 9.13 6.74 -96.75 -0.65 8.48 16 37 H 0.12 2.18 7.04 -2.91 -0.02 2.16 16 38 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.13 2.08 8.04 -2.91 -0.02 2.06 16 42 H 0.13 1.87 8.07 -2.38 -0.02 1.85 16 43 H 0.09 1.66 6.34 -2.39 -0.02 1.64 16 44 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.08 2.00 7.73 -2.39 -0.02 1.98 16 Total: -1.00 -74.06 376.22 -0.34 -74.41 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.15 Total: 26.61 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 4.28 Total: -38.50 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -2.02 Total: -127.48 kcal Atomic # 8 Polarization: -84.79 SS G_CDS: -4.23 Total: -89.02 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.81 Total: 51.41 kcal Atomic # 16 Polarization: 102.91 SS G_CDS: -0.34 Total: 102.57 kcal Total: -74.06 -0.34 -74.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283077066.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.049 kcal (2) G-P(sol) polarization free energy of solvation -74.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds