Wall clock time and date at job start Tue Mar 31 2020 20:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00190 * 2 1 4 4 H 1.09000 * 109.46940 * 30.00003 * 3 2 1 5 5 C 1.52999 * 109.47230 * 269.99928 * 3 2 1 6 6 C 1.52996 * 109.47202 * 149.99478 * 3 2 1 7 7 N 1.46897 * 109.47490 * 300.00372 * 6 3 2 8 8 C 1.46893 * 111.00171 * 293.95317 * 7 6 3 9 9 C 1.46898 * 111.00238 * 169.99571 * 7 6 3 10 10 C 1.50700 * 109.47297 * 189.99854 * 9 7 6 11 11 O 1.21291 * 119.99922 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00078 * 180.02562 * 10 9 7 13 13 C 1.39938 * 120.00194 * 185.74301 * 12 10 9 14 14 C 1.38684 * 120.11224 * 24.75523 * 13 12 10 15 15 C 1.38220 * 120.01894 * 180.02562 * 14 13 12 16 16 C 1.38390 * 120.24981 * 359.95655 * 15 14 13 17 17 C 1.38085 * 120.23045 * 0.02562 * 16 15 14 18 18 C 1.38994 * 119.97692 * 0.02643 * 17 16 15 19 19 S 1.76195 * 120.12502 * 179.97438 * 18 17 16 20 20 C 1.76203 * 100.00020 * 5.61963 * 19 18 17 21 21 H 1.07993 * 119.99677 * 354.96047 * 20 19 18 22 22 C 1.38687 * 119.99706 * 174.96929 * 20 19 18 23 23 N 1.31646 * 120.00649 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99638 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46985 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47108 * 119.99641 * 24 22 20 27 27 H 1.48500 * 109.46885 * 239.99664 * 24 22 20 28 28 H 1.09000 * 109.47620 * 299.99966 * 1 2 3 29 29 H 1.09002 * 109.46734 * 60.00141 * 1 2 3 30 30 H 1.09002 * 109.47468 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46775 * 179.97438 * 5 3 2 32 32 H 1.09000 * 109.47221 * 299.99903 * 5 3 2 33 33 H 1.08996 * 109.46983 * 60.00193 * 5 3 2 34 34 H 1.09001 * 109.47385 * 180.02562 * 6 3 2 35 35 H 1.09000 * 109.46744 * 60.00406 * 6 3 2 36 36 H 1.09007 * 109.47111 * 296.04758 * 8 7 6 37 37 H 1.08999 * 109.47382 * 56.04163 * 8 7 6 38 38 H 1.08997 * 109.47542 * 176.04381 * 8 7 6 39 39 H 1.08998 * 109.47032 * 70.00128 * 9 7 6 40 40 H 1.08997 * 109.47446 * 310.00225 * 9 7 6 41 41 H 0.97001 * 119.99879 * 5.73832 * 12 10 9 42 42 H 1.07998 * 119.98998 * 0.02562 * 14 13 12 43 43 H 1.08000 * 119.87651 * 179.97438 * 15 14 13 44 44 H 1.08008 * 119.88836 * 179.74074 * 16 15 14 45 45 H 1.08001 * 120.01104 * 179.97438 * 17 16 15 46 46 H 0.96997 * 120.00445 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3588 1.2632 0.7213 7 7 3.1596 0.8158 2.1063 8 6 2.3848 1.8015 2.8716 9 6 4.4454 0.5353 2.7590 10 6 4.1999 -0.1485 4.0793 11 8 3.0654 -0.3797 4.4408 12 7 5.2409 -0.5029 4.8585 13 6 5.0213 -1.2435 6.0254 14 6 3.8919 -2.0400 6.1417 15 6 3.6767 -2.7703 7.2953 16 6 4.5852 -2.7114 8.3375 17 6 5.7133 -1.9220 8.2325 18 6 5.9387 -1.1828 7.0772 19 16 7.3765 -0.1738 6.9394 20 6 8.2055 -0.6172 8.4296 21 1 7.7261 -1.2756 9.1388 22 6 9.4736 -0.1206 8.6918 23 7 10.0582 0.6817 7.8272 24 14 10.3522 -0.5901 10.2721 25 1 9.4867 -1.4961 11.0692 26 1 11.6246 -1.2820 9.9442 27 1 10.6434 0.6349 11.0593 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.6607 2.7673 -1.4424 32 1 2.8830 1.0774 -1.9563 33 1 1.2569 1.8014 -1.9563 34 1 3.8020 2.2590 0.7218 35 1 4.0241 0.5693 0.2075 36 1 2.9499 2.7308 2.9443 37 1 1.4377 1.9909 2.3663 38 1 2.1917 1.4145 3.8721 39 1 4.9788 1.4707 2.9280 40 1 5.0436 -0.1137 2.1195 41 1 6.1424 -0.2448 4.6104 42 1 3.1805 -2.0897 5.3307 43 1 2.7962 -3.3895 7.3836 44 1 4.4091 -3.2812 9.2380 45 1 6.4199 -1.8783 9.0482 46 1 10.9452 1.0288 8.0104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285772702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:05 Heat of formation + Delta-G solvation = -39.623435 kcal Electronic energy + Delta-G solvation = -26584.734238 eV Core-core repulsion = 22794.285033 eV Total energy + Delta-G solvation = -3790.449205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.21784 -38.87802 -37.81916 -36.33801 -34.30288 -32.76235 -32.21347 -30.30160 -29.70521 -27.69794 -27.39678 -26.52588 -25.88774 -23.58876 -22.35611 -21.71934 -20.91029 -19.86526 -18.36348 -17.07828 -17.00622 -16.74655 -16.11064 -15.84896 -15.47786 -15.39187 -15.10858 -14.80558 -14.41987 -14.30546 -14.00238 -13.62244 -13.33975 -13.08143 -12.91175 -12.84577 -12.74949 -12.56678 -12.21116 -12.16872 -11.86829 -11.67656 -11.61616 -11.52887 -11.28162 -11.24588 -11.04625 -10.73373 -10.37609 -10.07396 -9.81840 -9.73302 -9.58089 -9.25107 -8.76613 -8.65748 -8.37893 -7.61186 -6.53988 -6.51442 -4.24436 1.89152 2.11766 2.94463 3.00974 3.08423 3.15843 3.19168 3.36858 3.60265 3.91697 3.97799 4.49089 4.58166 4.75949 4.84235 4.89633 4.90779 5.08304 5.11759 5.14127 5.16558 5.25587 5.26102 5.31080 5.37006 5.50894 5.53070 5.57296 5.66814 5.67996 5.70569 5.84072 5.92374 6.06117 6.23375 6.26120 6.60517 6.74681 6.88240 6.91035 6.95207 7.12516 7.15584 7.25084 7.45610 7.72069 7.83573 8.13293 8.46281 8.95208 10.53590 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.002472 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.328951 B =11325.278059 C =12599.888443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.089 3.911 4 H 0.060 0.940 5 C -0.175 4.175 6 C 0.056 3.944 7 N -0.514 5.514 8 C 0.015 3.985 9 C 0.037 3.963 10 C 0.512 3.488 11 O -0.509 6.509 12 N -0.659 5.659 13 C 0.129 3.871 14 C -0.112 4.112 15 C -0.145 4.145 16 C -0.120 4.120 17 C -0.128 4.128 18 C -0.108 4.108 19 S 0.027 5.973 20 C -0.543 4.543 21 H 0.096 0.904 22 C 0.077 3.923 23 N -0.866 5.866 24 Si 0.925 3.075 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.277 1.277 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.021 0.979 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.411 0.589 42 H 0.138 0.862 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.138 0.862 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.026 1.881 -14.354 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.284 6.284 3 C 0.031 3.969 4 H 0.078 0.922 5 C -0.233 4.233 6 C -0.072 4.072 7 N -0.237 5.237 8 C -0.133 4.133 9 C -0.095 4.095 10 C 0.299 3.701 11 O -0.384 6.384 12 N -0.304 5.304 13 C 0.027 3.973 14 C -0.134 4.134 15 C -0.169 4.169 16 C -0.140 4.140 17 C -0.154 4.154 18 C -0.225 4.225 19 S 0.281 5.719 20 C -0.690 4.690 21 H 0.113 0.887 22 C -0.133 4.133 23 N -0.500 5.500 24 Si 0.750 3.250 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.203 1.203 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.039 0.961 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.248 0.752 42 H 0.155 0.845 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.155 0.845 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.240 2.184 -15.074 20.182 hybrid contribution 0.982 0.040 1.799 2.050 sum -12.258 2.224 -13.275 18.205 Atomic orbital electron populations 1.22725 0.81666 1.02597 0.99297 1.88004 1.18966 1.26616 1.94840 1.22112 0.94590 0.85558 0.94657 0.92170 1.22274 1.02512 1.01635 0.96871 1.22295 0.96540 0.99478 0.88866 1.61543 1.16122 1.44971 1.01113 1.22636 0.97382 0.92478 1.00774 1.21975 0.92472 1.00819 0.94187 1.20476 0.84870 0.79181 0.85572 1.90612 1.22045 1.53151 1.72605 1.43436 1.10731 1.53487 1.22702 1.17193 0.97233 0.96703 0.86136 1.21106 0.97230 0.95867 0.99171 1.20767 0.99844 1.01843 0.94402 1.20960 0.94872 0.99740 0.98460 1.21280 0.98353 0.97990 0.97765 1.22436 1.01991 1.02996 0.95067 1.83047 1.10937 1.47062 1.30886 1.23304 1.04172 1.35865 1.05655 0.88690 1.25088 0.96089 0.94046 0.98105 1.69999 1.15306 1.29772 1.34936 0.85999 0.79228 0.78666 0.81090 1.19136 1.20259 1.20301 0.94136 0.94800 0.89818 0.91656 0.91539 0.92303 0.93358 0.89704 0.96072 0.91810 0.88999 0.91562 0.87475 0.75237 0.84459 0.87030 0.87162 0.84457 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.39 16 2 O -0.37 -4.17 10.21 -35.23 -0.36 -4.53 16 3 C 0.09 0.81 2.60 -26.73 -0.07 0.74 16 4 H 0.06 0.52 6.12 -51.93 -0.32 0.20 16 5 C -0.17 -1.22 9.53 37.16 0.35 -0.86 16 6 C 0.06 0.53 4.65 -3.83 -0.02 0.51 16 7 N -0.51 -6.23 4.37 -244.38 -1.07 -7.30 16 8 C 0.02 0.18 9.01 60.06 0.54 0.72 16 9 C 0.04 0.44 5.45 -4.98 -0.03 0.41 16 10 C 0.51 8.13 7.36 -10.99 -0.08 8.05 16 11 O -0.51 -9.41 11.48 5.55 0.06 -9.34 16 12 N -0.66 -11.27 5.17 -9.70 -0.05 -11.32 16 13 C 0.13 2.58 6.44 -83.44 -0.54 2.05 16 14 C -0.11 -2.14 8.71 -39.42 -0.34 -2.48 16 15 C -0.15 -2.57 10.04 -39.53 -0.40 -2.97 16 16 C -0.12 -2.19 10.03 -39.58 -0.40 -2.58 16 17 C -0.13 -2.71 9.26 -39.36 -0.36 -3.07 16 18 C -0.11 -2.37 6.12 -38.75 -0.24 -2.61 16 19 S 0.03 0.66 20.37 -107.50 -2.19 -1.53 16 20 C -0.54 -14.33 9.08 30.90 0.28 -14.05 16 21 H 0.10 2.42 4.81 -52.49 -0.25 2.17 16 22 C 0.08 2.01 5.49 -17.47 -0.10 1.92 16 23 N -0.87 -23.72 13.22 55.48 0.73 -22.99 16 24 Si 0.92 20.17 29.55 -169.99 -5.02 15.14 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 27 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 28 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.03 0.24 7.87 -51.93 -0.41 -0.17 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 34 H 0.05 0.39 8.12 -51.93 -0.42 -0.04 16 35 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 36 H 0.02 0.22 8.14 -51.92 -0.42 -0.20 16 37 H 0.06 0.67 6.30 -51.93 -0.33 0.34 16 38 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 39 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 40 H 0.11 1.09 7.93 -51.93 -0.41 0.67 16 41 H 0.41 6.55 7.65 -40.82 -0.31 6.24 16 42 H 0.14 2.61 5.79 -52.49 -0.30 2.31 16 43 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 45 H 0.14 3.00 4.93 -52.49 -0.26 2.74 16 46 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -31.07 384.69 -9.05 -40.12 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.65 Total: 8.77 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -0.30 Total: -12.83 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -0.38 Total: -41.61 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.30 Total: -13.87 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.19 Total: -1.53 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.07 -9.05 -40.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285772702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.499 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds